bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-3_CDS_annotation_glimmer3.pl_2_5

Length=67
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  cel:CELE_K10H10.9  K10H10.9; Protein K10H10.9                       34.3    1.0
  ote:Oter_1874  permease                                             33.5    2.8


> cel:CELE_K10H10.9  K10H10.9; Protein K10H10.9
Length=257

 Score = 34.3 bits (77),  Expect = 1.0, Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query  23   VSLALDYRVGCTLFHAVEYVSKHPLVKPCLNKYVIASLSFQYSEL  67
            VSLAL+Y   C   H  E + + P +K C N+      SFQY EL
Sbjct  65   VSLALNYSANCGNAHKKEMIFRTPPIKNCANQ------SFQYDEL  103


> ote:Oter_1874  permease
Length=800

 Score = 33.5 bits (75),  Expect = 2.8, Method: Composition-based stats.
 Identities = 18/44 (41%), Positives = 25/44 (57%), Gaps = 0/44 (0%)

Query  13  KSPGLEHLSAVSLALDYRVGCTLFHAVEYVSKHPLVKPCLNKYV  56
           KSPG   +S V LAL   +  TLF  V++V   PL+ P  ++ V
Sbjct  14  KSPGYTAVSLVILALGIGINTTLFSVVDHVLLQPLIFPKADRLV  57



Lambda      K        H        a         alpha
   0.324    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127864635584