bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-12_CDS_annotation_glimmer3.pl_2_2
Length=136
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_gut_33_005_Microviridae_AG0181_hypothetical.p... 251 5e-87
Alpavirinae_Human_feces_A_034_Microviridae_AG0103_hypothetical.... 62.4 2e-15
Alpavirinae_Human_feces_D_031_Microviridae_AG0422_hypothetical.... 53.9 6e-12
Alpavirinae_Human_gut_33_017_Microviridae_AG0155_hypothetical.p... 31.2 0.001
Alpavirinae_Human_feces_A_021_Microviridae_AG078_hypothetical.p... 29.3 0.003
Alpavirinae_Human_gut_22_017_Microviridae_AG0398_hypothetical.p... 27.7 0.008
Alpavirinae_Human_feces_C_043_Microviridae_AG0323_hypothetical.... 26.2 0.029
Alpavirinae_Human_feces_D_022_Microviridae_AG0389_putative.VP4 22.3 1.6
Gokush_gi|19424731|ref|NP_598335.1|_hypothetical_protein_Sp-4p1... 22.3 2.1
Alpavirinae_Human_gut_32_012_Microviridae_AG0208_putative.VP1 21.6 3.5
> Alpavirinae_Human_gut_33_005_Microviridae_AG0181_hypothetical.protein
Length=205
Score = 251 bits (640), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 118/123 (96%), Positives = 120/123 (98%), Gaps = 0/123 (0%)
Query 1 VTSEMLAQGVLPEPNPVGDFLFDHNADGSVTFCSDYGILFGQKAIDNMNQTQLRRYMNSL 60
+TSEMLAQG+LPEPNPVGDFLFDHNADGSVTFCSDYGILFGQKAIDNMNQ QLRRYMNSL
Sbjct 70 MTSEMLAQGILPEPNPVGDFLFDHNADGSVTFCSDYGILFGQKAIDNMNQVQLRRYMNSL 129
Query 61 VPRSSNYTRNYNDDFLLDYCKDRNIQSATEMASWLDHLLSEGQSLESDLQAYAASLSASV 120
VPRSSNYTRNYNDDFLLDYCKDRNIQSATEMASWLDHLLSEGQSLESDLQAYA SLSASV
Sbjct 130 VPRSSNYTRNYNDDFLLDYCKDRNIQSATEMASWLDHLLSEGQSLESDLQAYADSLSASV 189
Query 121 VNP 123
V P
Sbjct 190 VEP 192
> Alpavirinae_Human_feces_A_034_Microviridae_AG0103_hypothetical.protein
Length=62
Score = 62.4 bits (150), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 32/36 (89%), Gaps = 0/36 (0%)
Query 77 LDYCKDRNIQSATEMASWLDHLLSEGQSLESDLQAY 112
++YCKDRNIQS TEM +WL+HL+SEGQSLE D+ AY
Sbjct 1 MEYCKDRNIQSYTEMQAWLEHLISEGQSLEGDVAAY 36
> Alpavirinae_Human_feces_D_031_Microviridae_AG0422_hypothetical.protein
Length=150
Score = 53.9 bits (128), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/118 (28%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query 2 TSEMLAQGVLPEPNPVGDFLFDHNADGSVTFCSDYGILFGQKAIDNMNQTQLRRYMN--- 58
T+ +L + + PV + + DG + + SD +L + + NQ Y+N
Sbjct 18 TARVLKSAIYCQVGPVEMLRYVKDDDGVIRYVSDVNLLMNAERL--RNQIGEESYLNLIR 75
Query 59 SLVPRSSNYTRNYNDDFLLDYCKDRNIQSATEMASWLDHLLSEGQSLESDLQAYAASL 116
+ P+ S Y Y D+ L K R IQ+ +E+ +W++ L S G S+ S+L A S+
Sbjct 76 GIQPKKSPYDNKYTDEQLFTAIKSRFIQTPSEVLAWIESLGSAGDSIRSELDALTESV 133
> Alpavirinae_Human_gut_33_017_Microviridae_AG0155_hypothetical.protein
Length=171
Score = 31.2 bits (69), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/90 (27%), Positives = 42/90 (47%), Gaps = 14/90 (16%)
Query 21 LFDHNADGSVTFCSDYGILFGQKAIDNMNQTQLRRYMNSLVPRSSNYTRNYNDDFLLDYC 80
L HN D + D FGQ + +Q+++ M+++ +D+ LL
Sbjct 70 LILHNKDLASRAGVDVASKFGQS---KQSPSQIQQIMDTM-----------SDEDLLATV 115
Query 81 KDRNIQSATEMASWLDHLLSEGQSLESDLQ 110
+ R IQS +E+ +W L + ++LES Q
Sbjct 116 RSRYIQSPSEILAWSKELSAYAENLESQAQ 145
> Alpavirinae_Human_feces_A_021_Microviridae_AG078_hypothetical.protein
Length=63
Score = 29.3 bits (64), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 25/45 (56%), Gaps = 0/45 (0%)
Query 77 LDYCKDRNIQSATEMASWLDHLLSEGQSLESDLQAYAASLSASVV 121
+ K RN+QS E+ +W + L + + ++++ + Y ++ A +
Sbjct 1 MSLIKPRNVQSHAELKAWSEFLTDKAKEIQTEYETYIENIRAEEI 45
> Alpavirinae_Human_gut_22_017_Microviridae_AG0398_hypothetical.protein
Length=69
Score = 27.7 bits (60), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/39 (36%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 72 NDDFLLDYCKDRNIQSATEMASWLDHLLSEGQSLESDLQ 110
+DD LL + R+IQ+ +E+ +W L + + LES Q
Sbjct 5 SDDDLLATVRSRHIQAPSEIIAWSKELSAYAEHLESQAQ 43
> Alpavirinae_Human_feces_C_043_Microviridae_AG0323_hypothetical.protein
Length=59
Score = 26.2 bits (56), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (62%), Gaps = 0/34 (0%)
Query 77 LDYCKDRNIQSATEMASWLDHLLSEGQSLESDLQ 110
++ K R +QS +E+ +WL+ L+ + + SD +
Sbjct 1 METIKSRYLQSPSEVRAWLETLVDKADVVRSDYE 34
> Alpavirinae_Human_feces_D_022_Microviridae_AG0389_putative.VP4
Length=307
Score = 22.3 bits (46), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (54%), Gaps = 1/28 (4%)
Query 31 TFCSDYGILFGQKAIDNMNQTQLRRYMN 58
FC + F ++ ID M + QL RY N
Sbjct 85 AFCKE-PYAFIRRFIDRMRKDQLLRYRN 111
> Gokush_gi|19424731|ref|NP_598335.1|_hypothetical_protein_Sp-4p1_[Spiroplasma_phage_4]
Length=320
Score = 22.3 bits (46), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 0/20 (0%)
Query 69 RNYNDDFLLDYCKDRNIQSA 88
R + D+F LDY K++ + A
Sbjct 259 REWQDEFYLDYIKEKREKVA 278
> Alpavirinae_Human_gut_32_012_Microviridae_AG0208_putative.VP1
Length=604
Score = 21.6 bits (44), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 0/20 (0%)
Query 83 RNIQSATEMASWLDHLLSEG 102
RNI + + + WLD L+ G
Sbjct 298 RNIAAQSHIQRWLDLALAGG 317
Lambda K H a alpha
0.315 0.130 0.379 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 8583516