bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-13_CDS_annotation_glimmer3.pl_2_3

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_E_011_Microviridae_AG0387_hypothetical....  21.2    5.7  
  Gokush_Human_feces_C_014_Microviridae_AG0148_putative.VP1           21.2    6.5
  Gokush_Human_gut_33_023_Microviridae_AG0365_putative.VP3            20.4    8.9


> Alpavirinae_Human_feces_E_011_Microviridae_AG0387_hypothetical.protein.BACEGG.02723
Length=410

 Score = 21.2 bits (43),  Expect = 5.7, Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 25/63 (40%), Gaps = 6/63 (10%)

Query  57   FRHVLSVICQSHKITILMIIFYKVTLLCGSVSFF-YQTIGALSTVDLYKFSCIFILNHSW  115
            F++ LS   Q    T   +   +   L G       Q    LS +D YKF+  +    +W
Sbjct  162  FQNALSTAIQMSNST--KVSNAEANNLQGQKGLADAQAAATLSGIDWYKFTPEY---RAW  216

Query  116  MLT  118
            + T
Sbjct  217  LQT  219


> Gokush_Human_feces_C_014_Microviridae_AG0148_putative.VP1
Length=566

 Score = 21.2 bits (43),  Expect = 6.5, Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (53%), Gaps = 4/36 (11%)

Query  92   QTIGALSTVDLYKFSCIFILNHSWMLTFVKILKYSI  127
            +TI   S V  ++F C F  N +W   F ++  YSI
Sbjct  529  RTIAVTSAVS-HQFLCDFWFNETW---FREMPIYSI  560


> Gokush_Human_gut_33_023_Microviridae_AG0365_putative.VP3
Length=153

 Score = 20.4 bits (41),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query  125  YSIIHKIFYLG-VTATRSGFPAYTVRSPIPN  154
            Y+I+++    G VT   SG P Y+  S +P+
Sbjct  36   YNILNQFNTTGIVTHVASGTPQYSDVSEVPD  66



Lambda      K        H        a         alpha
   0.337    0.146    0.461    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 12344976