bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-18_CDS_annotation_glimmer3.pl_2_4
Length=63
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Human_feces_E_007_Microviridae_AG0415_hypothetical.protein 70.5 3e-19
Alpavirinae_CF7ML_001_Microviridae_AG0309_putative.VP1 21.2 1.1
Gokush_Human_feces_A_013_Microviridae_AG011_putative.VP4 19.6 3.3
Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initia... 19.6 3.8
Alpavirinae_Human_gut_32_012_Microviridae_AG0206_putative.VP4 19.2 4.6
Alpavirinae_Human_gut_31_126_Microviridae_AG0305_putative.VP4 19.2 4.6
Gokush_Human_feces_E_009_Microviridae_AG0282_putative.VP4 19.2 4.7
Gokush_gi|77020118|ref|YP_338242.1|_putative_capsid_protein_[Ch... 18.9 6.3
Gokush_gi|17402853|ref|NP_510875.1|_capsid_protein_VP3_[Guinea_... 18.9 6.7
Gokush_gi|47566145|ref|YP_022483.1|_structural_protein_[Chlamyd... 18.5 8.3
> Gokush_Human_feces_E_007_Microviridae_AG0415_hypothetical.protein
Length=60
Score = 70.5 bits (171), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 33/58 (57%), Positives = 43/58 (74%), Gaps = 0/58 (0%)
Query 4 MKHTYELRKLENDDSVTTVLVLNEEPKDAKRKAADYANQHPGLYSLRKVEIVETYFTE 61
M HTYELRK + D S+TTVL L EPK AK++A +YA ++P LYSL K+E V+ + TE
Sbjct 1 MTHTYELRKFKGDGSMTTVLKLVAEPKQAKQRAEEYAKKNPALYSLEKIETVKIFCTE 58
> Alpavirinae_CF7ML_001_Microviridae_AG0309_putative.VP1
Length=692
Score = 21.2 bits (43), Expect = 1.1, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 0/33 (0%)
Query 26 NEEPKDAKRKAADYANQHPGLYSLRKVEIVETY 58
N EP D K+ + PGL + I+ +Y
Sbjct 183 NFEPTDLKKPFGEILATSPGLTDIFGYNILNSY 215
> Gokush_Human_feces_A_013_Microviridae_AG011_putative.VP4
Length=330
Score = 19.6 bits (39), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 7/19 (37%), Positives = 10/19 (53%), Gaps = 0/19 (0%)
Query 36 AADYANQHPGLYSLRKVEI 54
A DY HPG++ + I
Sbjct 236 ARDYYESHPGVFDSDYINI 254
> Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initiation_protein_[Bdellovibrio_phage_phiMH2K]
Length=315
Score = 19.6 bits (39), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 7/13 (54%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 22 VLVLNEEPKDAKR 34
VL+ N P DAK+
Sbjct 127 VLIFNFRPDDAKK 139
> Alpavirinae_Human_gut_32_012_Microviridae_AG0206_putative.VP4
Length=306
Score = 19.2 bits (38), Expect = 4.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 8/43 (19%)
Query 27 EEPKDAKRKAADYANQHP--------GLYSLRKVEIVETYFTE 61
E P A R+ D +HP G Y RKV + E
Sbjct 88 ERPYLAIRRFMDRLRKHPRFREKGASGRYRYRKVRFPYIFVVE 130
> Alpavirinae_Human_gut_31_126_Microviridae_AG0305_putative.VP4
Length=306
Score = 19.2 bits (38), Expect = 4.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 8/43 (19%)
Query 27 EEPKDAKRKAADYANQHP--------GLYSLRKVEIVETYFTE 61
E P A R+ D +HP G Y RKV + E
Sbjct 88 ERPYLAIRRFMDRLRKHPRFREKGASGRYRYRKVRFPYIFVVE 130
> Gokush_Human_feces_E_009_Microviridae_AG0282_putative.VP4
Length=340
Score = 19.2 bits (38), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 6/16 (38%), Positives = 11/16 (69%), Gaps = 0/16 (0%)
Query 39 YANQHPGLYSLRKVEI 54
Y ++HP LY +K+ +
Sbjct 250 YLDKHPDLYQYQKIFV 265
> Gokush_gi|77020118|ref|YP_338242.1|_putative_capsid_protein_[Chlamydia_phage_4]
Length=148
Score = 18.9 bits (37), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
Query 28 EPKDAKRKAADYANQHPGL 46
+PKD + + ANQ PGL
Sbjct 131 DPKDDQ----NVANQEPGL 145
> Gokush_gi|17402853|ref|NP_510875.1|_capsid_protein_VP3_[Guinea_pig_Chlamydia_phage]
Length=148
Score = 18.9 bits (37), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
Query 28 EPKDAKRKAADYANQHPGL 46
+PKD + + ANQ PGL
Sbjct 131 DPKDDQ----NVANQEPGL 145
> Gokush_gi|47566145|ref|YP_022483.1|_structural_protein_[Chlamydia_phage_3]
Length=148
Score = 18.5 bits (36), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 4/18 (22%)
Query 29 PKDAKRKAADYANQHPGL 46
PKD + + ANQ PGL
Sbjct 132 PKDDQ----NVANQEPGL 145
Lambda K H a alpha
0.310 0.128 0.351 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3708839