bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-22_CDS_annotation_glimmer3.pl_2_4
Length=58
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_C_029_Microviridae_AG0110_hypothetical.... 50.8 5e-12
Alpavirinae_Human_feces_A_048_Microviridae_AG088_hypothetical.p... 40.8 2e-08
Alpavirinae_Human_feces_B_020_Microviridae_AG0354_hypothetical.... 31.2 9e-05
Alpavirinae_Human_feces_C_010_Microviridae_AG0197_hypothetical.... 24.3 0.065
Microvirus_gi|89888097|ref|YP_512790.1|_gpB_[Enterobacteria_pha... 20.0 2.3
Gokush_gi|9634955|ref|NP_054653.1|_nonstructural_protein_[Chlam... 19.2 4.0
Microvirus_gi|89888610|ref|YP_512370.1|_gpB_[Enterobacteria_pha... 19.2 4.3
Gokush_gi|17402855|ref|NP_510879.1|_hypothetical_protein_PhiCPG... 19.2 4.3
Gokush_gi|47566147|ref|YP_022485.1|_nonstructural_protein_[Chla... 19.2 4.5
Gokush_gi|77020121|ref|YP_338244.1|_putative_replication_protei... 19.2 4.9
> Alpavirinae_Human_feces_C_029_Microviridae_AG0110_hypothetical.protein
Length=54
Score = 50.8 bits (120), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 22/45 (49%), Positives = 35/45 (78%), Gaps = 0/45 (0%)
Query 14 YELDEDVITKKYSFTKQERRLICEKTFDKDEQNAKIWKQRQLKLW 58
+E+ ED + K+Y+ ++ER+LICEKT+DKD ++ K W +QLKL+
Sbjct 10 FEIFEDTVIKEYNLNRKERKLICEKTYDKDLEDLKKWNHKQLKLF 54
> Alpavirinae_Human_feces_A_048_Microviridae_AG088_hypothetical.protein
Length=54
Score = 40.8 bits (94), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (69%), Gaps = 0/45 (0%)
Query 14 YELDEDVITKKYSFTKQERRLICEKTFDKDEQNAKIWKQRQLKLW 58
+E+ ED I K+Y+ ++ERRLI EKT+D+ + + +QLKLW
Sbjct 10 FEIFEDTIIKEYNLNRKERRLIIEKTYDEQKDLLRHVLNQQLKLW 54
> Alpavirinae_Human_feces_B_020_Microviridae_AG0354_hypothetical.protein
Length=80
Score = 31.2 bits (69), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/45 (36%), Positives = 27/45 (60%), Gaps = 0/45 (0%)
Query 13 CYELDEDVITKKYSFTKQERRLICEKTFDKDEQNAKIWKQRQLKL 57
+++ ED I K Y+ K ERRL+ E T+D ++ + ++ QL L
Sbjct 29 GFQIWEDTIFKSYNIKKTERRLLVEITYDLEKSQKEYFENLQLNL 73
> Alpavirinae_Human_feces_C_010_Microviridae_AG0197_hypothetical.protein.BACPLE
Length=382
Score = 24.3 bits (51), Expect = 0.065, Method: Composition-based stats.
Identities = 14/44 (32%), Positives = 25/44 (57%), Gaps = 3/44 (7%)
Query 9 MKKICYELDEDVITKKYS--FTKQERRLICEKTF-DKDEQNAKI 49
MK ++DE+++ K+ E L+C+KT+ D E N++I
Sbjct 226 MKAQQSQIDENIVQLKFDRYLRSNEFELLCKKTYQDMKESNSRI 269
> Microvirus_gi|89888097|ref|YP_512790.1|_gpB_[Enterobacteria_phage_ID18_sensu_lato]
Length=120
Score = 20.0 bits (40), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (46%), Gaps = 9/46 (20%)
Query 16 LDEDVITKKYSFTKQER------RLICEKTFDK---DEQNAKIWKQ 52
L D + + +QER + IC + F D+Q+AKI Q
Sbjct 48 LRRDPVQQHLEAERQERATIEAGKAICSRRFGGATCDDQSAKIHAQ 93
> Gokush_gi|9634955|ref|NP_054653.1|_nonstructural_protein_[Chlamydia_phage_2]
Length=336
Score = 19.2 bits (38), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 7/9 (78%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 45 QNAKIWKQR 53
QNAKIW R
Sbjct 85 QNAKIWSYR 93
> Microvirus_gi|89888610|ref|YP_512370.1|_gpB_[Enterobacteria_phage_ID2_Moscow/ID/2001]
Length=120
Score = 19.2 bits (38), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (46%), Gaps = 9/46 (20%)
Query 16 LDEDVITKKYSFTKQER------RLICEKTFDK---DEQNAKIWKQ 52
L D + + +QER + IC + F D+Q+AKI Q
Sbjct 48 LRRDPVQQHLEAERQERATIEAGKEICRRRFGGATCDDQSAKIHAQ 93
> Gokush_gi|17402855|ref|NP_510879.1|_hypothetical_protein_PhiCPG1p9_[Guinea_pig_Chlamydia_phage]
Length=263
Score = 19.2 bits (38), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 7/9 (78%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 45 QNAKIWKQR 53
QNAKIW R
Sbjct 12 QNAKIWSYR 20
> Gokush_gi|47566147|ref|YP_022485.1|_nonstructural_protein_[Chlamydia_phage_3]
Length=315
Score = 19.2 bits (38), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 7/9 (78%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 45 QNAKIWKQR 53
QNAKIW R
Sbjct 64 QNAKIWSYR 72
> Gokush_gi|77020121|ref|YP_338244.1|_putative_replication_protein_[Chlamydia_phage_4]
Length=315
Score = 19.2 bits (38), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 7/9 (78%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 45 QNAKIWKQR 53
QNAKIW R
Sbjct 64 QNAKIWSYR 72
Lambda K H a alpha
0.321 0.135 0.420 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3645348