bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-33_CDS_annotation_glimmer3.pl_2_2
Length=149
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_B_021_Microviridae_AG0368_putative.VP1 23.9 0.80
Alpavirinae_Human_feces_A_032_Microviridae_AG0219_putative.VP2 22.7 1.8
Pichovirinae_Bourget_523_Microviridae_AG0333_putative.VP1 21.2 5.3
Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4 21.2 6.2
Gokush_Bourget_052_Microviridae_AG0192_putative.DNA.binding.pro... 19.6 9.1
> Alpavirinae_Human_feces_B_021_Microviridae_AG0368_putative.VP1
Length=649
Score = 23.9 bits (50), Expect = 0.80, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (73%), Gaps = 1/22 (5%)
Query 75 NLSDI-FPAGRISIDYSPDLPT 95
N+SDI P ++SI+ + DLPT
Sbjct 108 NMSDIKLPQIKVSINKTIDLPT 129
> Alpavirinae_Human_feces_A_032_Microviridae_AG0219_putative.VP2
Length=355
Score = 22.7 bits (47), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 6/57 (11%)
Query 67 ECLIFRIKNLSDIFPAGRISID------YSPDLPTMMVLFYDGLNKYIQSCSRYYDS 117
E + +I+NL A SI + ++ T + F D +N I+S Y D
Sbjct 188 EEVEQKIENLKKTAQATEESIKLIQANVANKEVQTRIAQFQDDMNNIIKSSVWYEDG 244
> Pichovirinae_Bourget_523_Microviridae_AG0333_putative.VP1
Length=518
Score = 21.2 bits (43), Expect = 5.3, Method: Composition-based stats.
Identities = 22/93 (24%), Positives = 37/93 (40%), Gaps = 3/93 (3%)
Query 28 FIKPKNRFARALDSLISLD---MRRLEKESKKLRTKGLLYLMECLIFRIKNLSDIFPAGR 84
+ + +N + LDSL + R L K R Y CL + K + P G
Sbjct 159 YYRDQNLQSPVLDSLTDGENDPFRNLAAGPVKKRAWQHDYFTSCLPWAQKGDAVTIPIGD 218
Query 85 ISIDYSPDLPTMMVLFYDGLNKYIQSCSRYYDS 117
++I+Y+ ++ DG Q+ Y D+
Sbjct 219 VTINYNAAAGGTVMRQVDGTPYINQTDLNYSDA 251
> Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4
Length=539
Score = 21.2 bits (43), Expect = 6.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 10/46 (22%)
Query 68 CLIFRIKNLSDIFPAGRISIDYSPDL----------PTMMVLFYDG 103
CL KN I P GR S++++ + LFYDG
Sbjct 249 CLPDFFKNSRHIKPFGRFSVNFAESAFNEVFKPEENEEIFSLFYDG 294
> Gokush_Bourget_052_Microviridae_AG0192_putative.DNA.binding.protein
Length=71
Score = 19.6 bits (39), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 8/23 (35%), Positives = 12/23 (52%), Gaps = 0/23 (0%)
Query 9 TTLIAMLRTISIVLYLFPLFIKP 31
T LI + L+L +F+KP
Sbjct 11 TVLIDTFSCFHVSLFLLEIFMKP 33
Lambda K H a alpha
0.325 0.141 0.405 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 9888208