bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-36_CDS_annotation_glimmer3.pl_2_1
Length=422
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_C_010_Microviridae_AG0198_putative.VP4 792 0.0
Alpavirinae_Human_gut_21_005_Microviridae_AG013_putative.VP4 788 0.0
Alpavirinae_Human_feces_B_007_Microviridae_AG067_putative.VP4 146 1e-40
Gokush_Human_feces_A_029_Microviridae_AG0222_putative.VP4 93.2 7e-23
Pichovirinae_59_Coral_002_Microviridae_AG0338_putative.VP4 91.7 8e-23
Gokush_Human_feces_B_068_Microviridae_AG0328_putative.VP4 91.3 4e-22
Gokush_gi|77020121|ref|YP_338244.1|_putative_replication_protei... 88.2 2e-21
Gokush_gi|17402855|ref|NP_510879.1|_hypothetical_protein_PhiCPG... 87.0 4e-21
Gokush_gi|47566147|ref|YP_022485.1|_nonstructural_protein_[Chla... 87.0 6e-21
Gokush_gi|9634955|ref|NP_054653.1|_nonstructural_protein_[Chlam... 87.0 7e-21
> Alpavirinae_Human_feces_C_010_Microviridae_AG0198_putative.VP4
Length=451
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/415 (93%), Positives = 402/415 (97%), Gaps = 0/415 (0%)
Query 1 MNNIYCENPKVIWHPHASKLVQKYRTFTMPSGTYHGSVLhvnknhvnknnIDKYTIVNPV 60
MNNIYCE+PKVIWHPHASKL+QKYRTFTMPSG Y+GSVLHVNKNHVNKNNIDKYT+VNP
Sbjct 1 MNNIYCEDPKVIWHPHASKLIQKYRTFTMPSGVYYGSVLHVNKNHVNKNNIDKYTVVNPA 60
Query 61 TGETFPMFLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVF 120
TGETFPMFLIVPC+KC LCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVF
Sbjct 61 TGETFPMFLIVPCNKCALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVF 120
Query 121 PEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFDSAYARLT 180
PEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNF+SAY+RLT
Sbjct 121 PEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFESAYSRLT 180
Query 181 LIESCWCRPTGEYNSDGSPVTRSIGFAYCLPVIDGGINYVMKYMGKREKSPEGMNPTFML 240
LIESCW RPTGEYN DGSPVTRSIGFAYC+PVI+GGINYVMKY+GKRE +PEGMN TFML
Sbjct 181 LIESCWRRPTGEYNPDGSPVTRSIGFAYCVPVINGGINYVMKYLGKRECAPEGMNHTFML 240
Query 241 ASRKNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYYRMKYMPSTSMCY 300
ASRKNGGIGSAYAEQLR FYEQQPDTCDMSVINIYTGQSLTTMLPRYYRMK+MPSTSMCY
Sbjct 241 ASRKNGGIGSAYAEQLRAFYEQQPDTCDMSVINIYTGQSLTTMLPRYYRMKFMPSTSMCY 300
Query 301 DPNFIKYFKDTVRWFEVARYLHRQYKLPFKFTYPEEYLRLVRMTGKTPYYNPYKTIVNDT 360
DPNFIKYFKDTVRWFE+ARYLH+QYKLPFKFTYPEEYLRLVRMTGKTPYYNPYKT++NDT
Sbjct 301 DPNFIKYFKDTVRWFEIARYLHKQYKLPFKFTYPEEYLRLVRMTGKTPYYNPYKTVMNDT 360
Query 361 FIRSYLPQFTSQTVYEDLYYKSFSYALDCLATALVFFDSSQVLKHEKSLQMNVLQ 415
FI+ YLPQF SQ VYEDLY KSFSYALDCL+TALVFFDSSQVLKHEKSLQMN LQ
Sbjct 361 FIKYYLPQFLSQAVYEDLYCKSFSYALDCLSTALVFFDSSQVLKHEKSLQMNSLQ 415
> Alpavirinae_Human_gut_21_005_Microviridae_AG013_putative.VP4
Length=451
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/415 (92%), Positives = 399/415 (96%), Gaps = 0/415 (0%)
Query 1 MNNIYCENPKVIWHPHASKLVQKYRTFTMPSGTYHGSVLhvnknhvnknnIDKYTIVNPV 60
MNNIYCE+PKVIWHPHASKL+QKYRTFTMPSG YHGSVLHVNKNHVNKNNIDKYTIVNP
Sbjct 1 MNNIYCEDPKVIWHPHASKLIQKYRTFTMPSGVYHGSVLHVNKNHVNKNNIDKYTIVNPA 60
Query 61 TGETFPMFLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVF 120
TGETFPMFLIVPC+KC LCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVF
Sbjct 61 TGETFPMFLIVPCNKCVLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVF 120
Query 121 PEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFDSAYARLT 180
PEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNF+SAY+RLT
Sbjct 121 PEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFESAYSRLT 180
Query 181 LIESCWCRPTGEYNSDGSPVTRSIGFAYCLPVIDGGINYVMKYMGKREKSPEGMNPTFML 240
LIESCW RPTG+YN DGSPVTRSIGFAYC+PVI+GGINYVMKYMGKREKSPEGMNPTFML
Sbjct 181 LIESCWRRPTGKYNPDGSPVTRSIGFAYCVPVINGGINYVMKYMGKREKSPEGMNPTFML 240
Query 241 ASRKNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYYRMKYMPSTSMCY 300
ASRKNGGIGSAYAEQLR FYEQQPDTCDMSVINIYTGQ+LTTMLPRYYRMK+MPS SMCY
Sbjct 241 ASRKNGGIGSAYAEQLRAFYEQQPDTCDMSVINIYTGQTLTTMLPRYYRMKFMPSPSMCY 300
Query 301 DPNFIKYFKDTVRWFEVARYLHRQYKLPFKFTYPEEYLRLVRMTGKTPYYNPYKTIVNDT 360
DPNFIK+FKDTVRWFE ARYLH+QYKLPFKFTYPEEYLRL+RMT KTPYYNP + IVNDT
Sbjct 301 DPNFIKHFKDTVRWFETARYLHKQYKLPFKFTYPEEYLRLIRMTNKTPYYNPSRNIVNDT 360
Query 361 FIRSYLPQFTSQTVYEDLYYKSFSYALDCLATALVFFDSSQVLKHEKSLQMNVLQ 415
FI+ YLPQF SQTVYEDLYYK+FSY LDCLAT+LVFFDSSQVLKHEKSL MN LQ
Sbjct 361 FIKYYLPQFCSQTVYEDLYYKAFSYGLDCLATSLVFFDSSQVLKHEKSLHMNSLQ 415
> Alpavirinae_Human_feces_B_007_Microviridae_AG067_putative.VP4
Length=515
Score = 146 bits (369), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/298 (33%), Positives = 139/298 (47%), Gaps = 49/298 (16%)
Query 51 IDKYTIVNPVTGETFPMFLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYN 110
I+ ++N TG+ P++++VPC C +C ++KA + RA+ E+ T+ FITLTYN
Sbjct 59 IEHCYLLNSETGDMIPLYIVVPCGSCVICRKRKANALATRAIMETETTGSAPLFITLTYN 118
Query 111 NEHLPKN-----GVFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL 165
EHLPKN + ++QLFFKRLR+ LD + ISH+LRY+A EYG +KRPHYH++L
Sbjct 119 PEHLPKNEYGYETLRKSDLQLFFKRLRSLLDNQSISHSLRYLACGEYGTNTKRPHYHLLL 178
Query 166 WNFP-DNFDSAYARLTLIESCW-----------------CR--PTGEYNS---------- 195
W FP +F I+ W CR P +Y
Sbjct 179 WGFPATHFKDILKVQAFIQKAWSYFQSDENGKRIPYYSKCRSCPLNQYKDRNSCSAVAHL 238
Query 196 ---------DGSPVTRS--IGFAYCLPVIDGGINYVMKYMGKREKSPEGMNPT-FMLASR 243
G+ + R IG LP G Y+ KYM K +P F +AS
Sbjct 239 CAGARLRYPSGAFIYRRYPIGSIKVLPANSGAPAYITKYMVKGSNAPHSTCELPFRVASN 298
Query 244 KNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLP--RYYRMKYMPSTSMC 299
+ GGIGSAY + + V++ TG +P + + +PS S C
Sbjct 299 RGGGIGSAYIRARKDEILSNSSLEALPVVDRVTGSGKIFYMPIDSWVKSTLIPSPSSC 356
> Gokush_Human_feces_A_029_Microviridae_AG0222_putative.VP4
Length=343
Score = 93.2 bits (230), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 117/276 (42%), Gaps = 59/276 (21%)
Query 52 DKYTIVNPVTGETFPMFLIV--PCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTY 109
D IV P + IV PC +C C + ++QW+ R + E + AYF+T+TY
Sbjct 36 DAIKIVGAFKPVGVPDWKIVQIPCGRCIGCRLEYSRQWANRCMLE-LQYHDSAYFVTVTY 94
Query 110 NNEHLPK---------NGVFP------EEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGH 154
++EH+P+ + P ++QLF KR+R +R +RY EYG
Sbjct 95 DDEHVPQTYSSDSETGEALLPLMTLSKRDMQLFMKRVR----KRFCDDRIRYFLAGEYGS 150
Query 155 WSKRPHYHIILWN--------FPDNF--DSAYARLTLIESCWCRPTGEYNSDGSPVTRSI 204
+ RPHYH IL+ + NF D Y +L +CWC + R +
Sbjct 151 TTFRPHYHCILFGLHLYDLVPYAKNFRGDVLYNSQSL-SACWCDKS----------ARPM 199
Query 205 GFAYCLPVIDGGINYVMKYMGKREKSPE-------GMNPTFMLASRKNGGIGSAYAEQLR 257
G+ PV YV +Y K+ + G+ F L SRK GIG R
Sbjct 200 GYVVVAPVTYETCAYVARYTSKKSGVNDLEAYDLLGLARPFTLMSRKP-GIG-------R 251
Query 258 PFYEQQPDTCDMSVINIYTGQSLTTML-PRYYRMKY 292
+++ PD D IN+ TG PRYY Y
Sbjct 252 QYFDDHPDCMDYDFINVSTGDGGKKFHPPRYYEKLY 287
> Pichovirinae_59_Coral_002_Microviridae_AG0338_putative.VP4
Length=274
Score = 91.7 bits (226), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 107/233 (46%), Gaps = 41/233 (18%)
Query 67 MFLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG---VFPEE 123
+ + VPC KC C +++A QWSFR E+ TS+ A FITLTY N + +NG + +
Sbjct 21 LMVSVPCGKCLACTKRRASQWSFRLNEEAKTSS-SACFITLTYENAPVSENGFRTLNKRD 79
Query 124 IQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFDSAYARLTLIE 183
QLF KRLR K ++ L+Y A EYG + RPHYH I++N P + ++
Sbjct 80 FQLFLKRLRKKCP----TNKLKYYACGEYGTRTFRPHYHAIIFNLPKSLIQDPQKIV--- 132
Query 184 SCWCRPTGEYNSDGSPVTRSIGFAYCLPVIDGGINYVMKYMGK----REKSPEGMNPTFM 239
W + G + INYV+ YM K R + P F
Sbjct 133 DTW----------------THGHIHLANNNQSTINYVVGYMTKGNFERFNDQDDRMPEFS 176
Query 240 LASRKNGGIGSAY-AEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYYRMK 291
L S+K +G Y Q++ +Y ++ TC + +PRYY+ K
Sbjct 177 LMSKK---MGMGYLTPQMKEYYRKREITC------LVRENGHIISMPRYYKEK 220
> Gokush_Human_feces_B_068_Microviridae_AG0328_putative.VP4
Length=351
Score = 91.3 bits (225), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/255 (29%), Positives = 111/255 (44%), Gaps = 59/255 (23%)
Query 69 LIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKN----------- 117
+I+PC KC C + ++QW+ R + E + ++F+TLTY++ HLP++
Sbjct 60 VIIPCGKCLGCRLEYSRQWANRCMLE-LGYHVSSWFVTLTYDDAHLPRSFYGNPDTGEAV 118
Query 118 ---GVFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFDS 174
++ + QLF KRLR K +R+ A EYG +KRPHYH I++ +
Sbjct 119 PCATLYKRDFQLFMKRLRYKF-----GDGIRFYAAGEYGDQTKRPHYHAIIYGLELDDLV 173
Query 175 AYARLTL--------------IESCWCRPTGEYNSDGSPVTRSIGFAYCLPVIDGGINYV 220
Y ++ L ++SCW + DG+ IGF V YV
Sbjct 174 FYKKMALESANLYYNYYNSESLQSCW------RDKDGN----DIGFVVVGKVTWETCAYV 223
Query 221 MKYMGKREKSPEG-------MNPTFMLASRKNGGIGSAYAEQLRPFYEQQPDTCDMSVIN 273
+Y+ K++K + P F L SRK G A Q +YE P+ D IN
Sbjct 224 ARYIMKKQKGQGADVYERFNIEPEFCLMSRKPG-----IAHQ---YYEDHPEMWDYDKIN 275
Query 274 IYTGQSLTTMLPRYY 288
I T + P Y
Sbjct 276 ISTPNGGRSFRPPQY 290
> Gokush_gi|77020121|ref|YP_338244.1|_putative_replication_protein_[Chlamydia_phage_4]
Length=315
Score = 88.2 bits (217), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/232 (32%), Positives = 114/232 (49%), Gaps = 34/232 (15%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG-VFPEEIQL 126
++++PC +C C + A+ WS+R + E+ + Q F+TLTY ++HLP+NG + L
Sbjct 50 WILMPCRRCKFCRVQNAKIWSYRCMHEA-SLYSQNCFLTLTYEDQHLPENGSLVRNHPTL 108
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWN--FPDNFDSAYAR---LTL 181
F +RLR + H +RY EYG +RPHYH++++N FPD + R L +
Sbjct 109 FLRRLREHIS----PHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFV 164
Query 182 IE---SCWCRPTGEYNSDGSPVTRSIGFA--YCLPVIDGGINYVMKYMGKREKSPEGMNP 236
E W P G +++ GS +S G+ Y L + I+ + G+R P
Sbjct 165 SEKLMQLW--PYG-FSTVGSVTRQSAGYVARYSLKKVSRDIS--QDHYGQR-------LP 212
Query 237 TFMLASRKNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYY 288
F++ S K G Y + R Y Q D V+ G+S TT PRYY
Sbjct 213 EFLMCSLKPGIGADWYEKYKRDVYPQ-----DYLVVQD-KGKSFTTRPPRYY 258
> Gokush_gi|17402855|ref|NP_510879.1|_hypothetical_protein_PhiCPG1p9_[Guinea_pig_Chlamydia_phage]
Length=263
Score = 87.0 bits (214), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/227 (32%), Positives = 109/227 (48%), Gaps = 30/227 (13%)
Query 71 VPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG-VFPEEIQLFFK 129
+P KC C + A+ WS+R + E+ + Q F+TLTY + HLP+NG + + LF
Sbjct 1 MPWRKCKFCRVQNAKIWSYRCIHEA-SLYSQNCFLTLTYEDRHLPENGSLVRDHPALFLM 59
Query 130 RLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWN--FPDN--FDSAYARLTLIESC 185
RLR ++ H +RY EYG +RPHYH++++N FPD +
Sbjct 60 RLRKEI----YPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFVSEK 115
Query 186 WCR--PTGEYNSDGSPVTRSIGFA--YCLPVIDGGINYVMKYMGKREKSPEGMNPTFMLA 241
R P G +++ GS + +S G+ Y L ++G I+ + G+R P F++
Sbjct 116 LMRLWPFG-FSTVGSVMRQSAGYVARYSLKKVNGDIS--QDHYGQRL-------PQFLMC 165
Query 242 SRKNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYY 288
S K G Y + R Y Q D V+ G+S TT PRYY
Sbjct 166 SLKPGIGADWYEKYKRDVYPQ-----DYLVVQD-KGKSFTTRPPRYY 206
> Gokush_gi|47566147|ref|YP_022485.1|_nonstructural_protein_[Chlamydia_phage_3]
Length=315
Score = 87.0 bits (214), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/232 (32%), Positives = 114/232 (49%), Gaps = 34/232 (15%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG-VFPEEIQL 126
+++ PC KC C + A+ WS+R + E+ + Q F+TLTY + HLP+NG + + +L
Sbjct 50 WVVKPCLKCRFCRVQNAKIWSYRCMHEA-SLYSQNCFLTLTYEDRHLPENGSLVRDHPRL 108
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWN--FPDNFDSAYAR---LTL 181
F +RLR + H +RY EYG +RPHYH++++N FPD + R L +
Sbjct 109 FLRRLREHI----YPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFV 164
Query 182 IE---SCWCRPTGEYNSDGSPVTRSIGFA--YCLPVIDGGINYVMKYMGKREKSPEGMNP 236
E W P G +++ GS +S G+ Y L ++G + + G+R P
Sbjct 165 SEKLMQLW--PFG-FSTVGSVTRQSAGYVARYSLKKVNGDSS--QDHYGQR-------LP 212
Query 237 TFMLASRKNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYY 288
F++ S K G Y + R Y Q D V+ G+S T PRYY
Sbjct 213 EFLMCSLKPGIGADWYEKYKRDVYPQ-----DYLVVQD-KGKSFKTRPPRYY 258
> Gokush_gi|9634955|ref|NP_054653.1|_nonstructural_protein_[Chlamydia_phage_2]
Length=336
Score = 87.0 bits (214), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/234 (30%), Positives = 115/234 (49%), Gaps = 38/234 (16%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG-VFPEEIQL 126
++++PC +C C + A+ WS+R + E+ + Q F+TLTY + HLP+NG + + +L
Sbjct 71 WVLMPCRRCKFCRVQNAKIWSYRCMHEA-SLYSQNCFLTLTYEDRHLPENGSLVRDHPRL 129
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWN--FPDN--FDSAYARLTLI 182
F RLR + H +RY EYG +RPHYH++++N FPD +
Sbjct 130 FLMRLREHI----YPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFV 185
Query 183 ESCWCR--PTGEYNSDGSPVTRSIGFA--YCLPVIDGGINYVMKYMGKREKSPEGMNPTF 238
R P G +++ GS +S G+ Y L ++G I+ + G+R P F
Sbjct 186 SEKLMRLWPFG-FSTVGSVTRQSAGYVARYSLKKVNGDIS--QDHYGQRL-------PEF 235
Query 239 MLASRKNGGIGSAYAEQLRPFYEQQPDTCDM----SVINIYTGQSLTTMLPRYY 288
++ S K GIG+ + E+ + CD+ ++ G+S T PRYY
Sbjct 236 LMCSLK-PGIGADWYEKYK---------CDVYPQDYLVVQDKGKSFKTRPPRYY 279
Lambda K H a alpha
0.323 0.137 0.438 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 37422216