bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-40_CDS_annotation_glimmer3.pl_2_1
Length=58
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_gut_30_040_Microviridae_AG0135_hypothetical.p... 57.0 6e-13
Microvirus_gi|9625360|ref|NP_039594.1|_capsid_morphogenesis_pro... 19.6 2.6
Microvirus_gi|242346747|ref|YP_002985209.1|_gpD_[Enterobacteria... 19.6 2.6
Gokush_Human_gut_31_054_Microviridae_AG0234_putative.VP2 19.2 4.5
Gokush_Human_gut_21_019_Microviridae_AG0377_putative.VP2 18.9 5.9
Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initia... 18.9 6.5
Alpavirinae_Human_feces_C_029_Microviridae_AG0109_putative.VP1 18.5 7.8
Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1 18.5 8.3
> Alpavirinae_Human_gut_30_040_Microviridae_AG0135_hypothetical.protein
Length=377
Score = 57.0 bits (136), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/29 (90%), Positives = 29/29 (100%), Gaps = 0/29 (0%)
Query 1 MIERWEEQTFNERIGLGLEFGENIVNLLY 29
MIERWEEQTFNERIGLGLEFG+NIV++LY
Sbjct 320 MIERWEEQTFNERIGLGLEFGDNIVDMLY 348
> Microvirus_gi|9625360|ref|NP_039594.1|_capsid_morphogenesis_protein_[Enterobacteria_phage_alpha3]
Length=150
Score = 19.6 bits (39), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 7/10 (70%), Positives = 8/10 (80%), Gaps = 0/10 (0%)
Query 17 GLEFGENIVN 26
G EF ENI+N
Sbjct 98 GAEFSENIIN 107
> Microvirus_gi|242346747|ref|YP_002985209.1|_gpD_[Enterobacteria_phage_St-1]
Length=150
Score = 19.6 bits (39), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 7/10 (70%), Positives = 8/10 (80%), Gaps = 0/10 (0%)
Query 17 GLEFGENIVN 26
G EF ENI+N
Sbjct 98 GAEFSENIIN 107
> Gokush_Human_gut_31_054_Microviridae_AG0234_putative.VP2
Length=242
Score = 19.2 bits (38), Expect = 4.5, Method: Composition-based stats.
Identities = 7/15 (47%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 5 WEEQTFNERIGLGLE 19
+ EQT+ +R+G LE
Sbjct 141 FREQTYEKRLGYELE 155
> Gokush_Human_gut_21_019_Microviridae_AG0377_putative.VP2
Length=242
Score = 18.9 bits (37), Expect = 5.9, Method: Composition-based stats.
Identities = 7/13 (54%), Positives = 10/13 (77%), Gaps = 0/13 (0%)
Query 7 EQTFNERIGLGLE 19
EQT+ +R+G LE
Sbjct 143 EQTYEKRLGYELE 155
> Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initiation_protein_[Bdellovibrio_phage_phiMH2K]
Length=315
Score = 18.9 bits (37), Expect = 6.5, Method: Composition-based stats.
Identities = 6/10 (60%), Positives = 9/10 (90%), Gaps = 0/10 (0%)
Query 2 IERWEEQTFN 11
IE++ EQTF+
Sbjct 212 IEKYHEQTFS 221
> Alpavirinae_Human_feces_C_029_Microviridae_AG0109_putative.VP1
Length=640
Score = 18.5 bits (36), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/22 (41%), Positives = 12/22 (55%), Gaps = 8/22 (36%)
Query 8 QTFNERIG--------LGLEFG 21
Q FNER+G +G +FG
Sbjct 319 QQFNERLGANSEHLKTIGPQFG 340
> Alpavirinae_Human_feces_B_020_Microviridae_AG0351_putative.VP1
Length=651
Score = 18.5 bits (36), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 5/12 (42%), Positives = 9/12 (75%), Gaps = 0/12 (0%)
Query 11 NERIGLGLEFGE 22
N R+G+GL+ +
Sbjct 100 NNRLGIGLDMSQ 111
Lambda K H a alpha
0.315 0.136 0.393 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3645348