bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters



Query= Contig-41_CDS_annotation_glimmer3.pl_2_1

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_gut_30_017_Microviridae_AG0205_putative.VP1       29.6    0.017
  Alpavirinae_Human_gut_32_012_Microviridae_AG0209_hypothetical.p...  23.5    1.3  
  Alpavirinae_Human_gut_31_126_Microviridae_AG0304_hypothetical.p...  23.5    1.3  
  Gokush_gi|393707870|ref|YP_004732992.1|_non-structural_protein_...  20.0    9.1


> Alpavirinae_Human_gut_30_017_Microviridae_AG0205_putative.VP1
Length=647

 Score = 29.6 bits (65),  Expect = 0.017, Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (47%), Gaps = 8/64 (13%)

Query  76   EICRNTFLSILHNILISLECLTSFHKGVFTQSYWVQRANQRLKNFLPLETSKHLQQI---  132
            E C N F S    +L SL+   +    V  QSYWVQ+     ++F  +  S  L +I   
Sbjct  547  EPCYNEFRSSYDEVLGSLQSTLTPKASVPLQSYWVQQ-----RDFYLIGLSSDLNEISPS  601

Query  133  MLLT  136
            ML T
Sbjct  602  MLFT  605


> Alpavirinae_Human_gut_32_012_Microviridae_AG0209_hypothetical.protein
Length=190

 Score = 23.5 bits (49),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 9/17 (53%), Positives = 13/17 (76%), Gaps = 0/17 (0%)

Query  4   KYATTLFASTVHNHSVR  20
           +Y+ TLF + VHN +VR
Sbjct  33  QYSGTLFRTGVHNDTVR  49


> Alpavirinae_Human_gut_31_126_Microviridae_AG0304_hypothetical.protein
Length=190

 Score = 23.5 bits (49),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 9/17 (53%), Positives = 13/17 (76%), Gaps = 0/17 (0%)

Query  4   KYATTLFASTVHNHSVR  20
           +Y+ TLF + VHN +VR
Sbjct  33  QYSGTLFRTGVHNDTVR  49


> Gokush_gi|393707870|ref|YP_004732992.1|_non-structural_protein_[Microviridae_phi-CA82]
Length=80

 Score = 20.0 bits (40),  Expect = 9.1, Method: Compositional matrix adjust.
 Identities = 6/13 (46%), Positives = 9/13 (69%), Gaps = 0/13 (0%)

Query  136  TKKVSDALFPCQM  148
            T  ++DA+F C M
Sbjct  19   TYDIADAMFECGM  31



Lambda      K        H        a         alpha
   0.328    0.136    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 14493971