bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-6_CDS_annotation_glimmer3.pl_2_6

Length=59
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_A_033_Microviridae_AG0381_putative.VP4      22.3    0.29
  Gokush_Bourget_309_Microviridae_AG0288_putative.VP1                 19.2    4.1
  Alpavirinae_Human_gut_24_085_Microviridae_AG0231_hypothetical.p...  18.9    4.8  
  Gokush_Human_feces_E_007_Microviridae_AG0415_hypothetical.protein   18.9    5.0
  Alpavirinae_Human_feces_D_022_Microviridae_AG0389_putative.VP4      18.5    8.8
  Alpavirinae_Human_feces_B_021_Microviridae_AG0368_putative.VP1      18.5    8.9


> Alpavirinae_Human_feces_A_033_Microviridae_AG0381_putative.VP4
Length=307

 Score = 22.3 bits (46),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 13/47 (28%), Positives = 26/47 (55%), Gaps = 8/47 (17%)

Query  12   WRDPKTGQFKTSEYRKKN-----QMSIVDARSYARRLVNIQNVLSVR  53
            +RDP TG+F+   YRK +      + + D +  A+R ++ ++ L + 
Sbjct  109  YRDPDTGRFR---YRKLSFPYLFVLEVADGKRAAQRKLSSEHRLHIH  152


> Gokush_Bourget_309_Microviridae_AG0288_putative.VP1
Length=536

 Score = 19.2 bits (38),  Expect = 4.1, Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 0/21 (0%)

Query  3    KYTFIFEIIWRDPKTGQFKTS  23
            KY   F+  WR+  TG  + S
Sbjct  223  KYDTGFDGKWRNTSTGALQPS  243


> Alpavirinae_Human_gut_24_085_Microviridae_AG0231_hypothetical.protein
Length=109

 Score = 18.9 bits (37),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 14/30 (47%), Gaps = 0/30 (0%)

Query  16   KTGQFKTSEYRKKNQMSIVDARSYARRLVN  45
            K   +KTSEY +   + + D  S  +   N
Sbjct  72   KISNYKTSEYLRSGNVEVEDKNSGKQEEAN  101


> Gokush_Human_feces_E_007_Microviridae_AG0415_hypothetical.protein
Length=60

 Score = 18.9 bits (37),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 7/16 (44%), Positives = 10/16 (63%), Gaps = 0/16 (0%)

Query  14  DPKTGQFKTSEYRKKN  29
           +PK  + +  EY KKN
Sbjct  25  EPKQAKQRAEEYAKKN  40


> Alpavirinae_Human_feces_D_022_Microviridae_AG0389_putative.VP4
Length=307

 Score = 18.5 bits (36),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 12/47 (26%), Positives = 25/47 (53%), Gaps = 8/47 (17%)

Query  12   WRDPKTGQFKTSEYRKKN-----QMSIVDARSYARRLVNIQNVLSVR  53
            +R+P TG+F    YRK +      + + D +  A+R ++ ++ L + 
Sbjct  109  YRNPDTGRFC---YRKISFPYFFVLEVADGKRAAQRRLHSEHRLHLH  152


> Alpavirinae_Human_feces_B_021_Microviridae_AG0368_putative.VP1
Length=649

 Score = 18.5 bits (36),  Expect = 8.9, Method: Composition-based stats.
 Identities = 11/41 (27%), Positives = 21/41 (51%), Gaps = 0/41 (0%)

Query  12   WRDPKTGQFKTSEYRKKNQMSIVDARSYARRLVNIQNVLSV  52
            W D  TG  + S     +    +DA + A+++ N+ N ++V
Sbjct  370  WIDGVTGINEISAVDVTDGKLTMDALNLAQKVYNMLNRIAV  410



Lambda      K        H        a         alpha
   0.326    0.136    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3629248