bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_8
Length=65
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_gut_21_005_Microviridae_AG015_hypothetical.pr... 96.3 2e-29
Alpavirinae_Human_gut_31_037_Microviridae_AG0295_hypothetical.p... 65.1 3e-17
Alpavirinae_Human_feces_A_047_Microviridae_AG0316_hypothetical.... 48.9 4e-11
Alpavirinae_Human_feces_B_020_Microviridae_AG0350_hypothetical.... 47.8 1e-10
Alpavirinae_Human_feces_A_048_Microviridae_AG089_hypothetical.p... 47.0 2e-10
Alpavirinae_Human_feces_B_021_Microviridae_AG0371_hypothetical.... 46.2 5e-10
Gokush_Human_feces_A_029_Microviridae_AG0226_putative.VP1 19.6 3.7
Gokush_gi|393707866|ref|YP_004732988.1|_DNA_replication_initiat... 18.9 7.3
Gokush_Human_feces_B_068_Microviridae_AG0331_putative.VP1 18.9 8.7
Gokush_Human_feces_E_007_Microviridae_AG0412_putative.VP1 18.9 9.1
> Alpavirinae_Human_gut_21_005_Microviridae_AG015_hypothetical.protein
Length=52
Score = 96.3 bits (238), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 47/52 (90%), Positives = 50/52 (96%), Gaps = 0/52 (0%)
Query 14 LISTFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQEVDSVTIKPQF 65
+I+TFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQ+VDSVTI P F
Sbjct 1 MIATFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQKVDSVTINPHF 52
> Alpavirinae_Human_gut_31_037_Microviridae_AG0295_hypothetical.protein
Length=64
Score = 65.1 bits (157), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 28/55 (51%), Positives = 43/55 (78%), Gaps = 0/55 (0%)
Query 8 WIELVKLISTFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQEVDSVTIK 62
W E++++I T + ++TAL QSCTA+MSVFWKN NS+Q S+Q+T ++DS+ I+
Sbjct 6 WKEIIRIIVTVLTALLTALGAQSCTATMSVFWKNANSQQKSEQSTTSKIDSIKIE 60
> Alpavirinae_Human_feces_A_047_Microviridae_AG0316_hypothetical.protein
Length=67
Score = 48.9 bits (115), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 2/67 (3%)
Query 1 MKITPNQWIELVKLISTFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQEVDS-- 58
MKIT QW+E+++ IST II +IT L VQSCT S+SV NQNS Q ++QT+ VDS
Sbjct 1 MKITGTQWVEIIRAISTAIIAIITTLCVQSCTMSLSVAKNNQNSTQKTEQTSTSSVDSTK 60
Query 59 VTIKPQF 65
+ I P++
Sbjct 61 ININPKY 67
> Alpavirinae_Human_feces_B_020_Microviridae_AG0350_hypothetical.protein
Length=65
Score = 47.8 bits (112), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/61 (56%), Positives = 43/61 (70%), Gaps = 0/61 (0%)
Query 1 MKITPNQWIELVKLISTFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQEVDSVT 60
MKIT NQW+E+++ IST II +IT L VQSCT S+SV N NS Q ++QT+ VDS
Sbjct 1 MKITSNQWVEIIRAISTAIIAIITTLCVQSCTMSLSVSKNNSNSTQKTEQTSTSSVDSTK 60
Query 61 I 61
I
Sbjct 61 I 61
> Alpavirinae_Human_feces_A_048_Microviridae_AG089_hypothetical.protein
Length=68
Score = 47.0 bits (110), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (70%), Gaps = 2/66 (3%)
Query 1 MKITPNQWIELVKLISTFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQEVDS-- 58
MKIT NQW+E+++ IST II +IT L VQSCT S+SV N N+ Q ++QT+ +DS
Sbjct 1 MKITGNQWVEIIRAISTAIIAIITTLCVQSCTMSLSVAKNNNNASQKTEQTSTSSIDSTK 60
Query 59 VTIKPQ 64
+ I P+
Sbjct 61 ININPK 66
> Alpavirinae_Human_feces_B_021_Microviridae_AG0371_hypothetical.protein.BACEGG.02719
Length=68
Score = 46.2 bits (108), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/66 (52%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query 1 MKITPNQWIELVKLISTFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQEVDS-- 58
MKIT QW+E+++ IST II +IT L VQSCT S+SV N N+ Q ++QTT VDS
Sbjct 1 MKITGTQWVEIIRAISTAIIAIITTLCVQSCTMSLSVAKNNNNASQKTEQTTTSSVDSTH 60
Query 59 VTIKPQ 64
+ I P+
Sbjct 61 ININPK 66
> Gokush_Human_feces_A_029_Microviridae_AG0226_putative.VP1
Length=470
Score = 19.6 bits (39), Expect = 3.7, Method: Composition-based stats.
Identities = 8/26 (31%), Positives = 13/26 (50%), Gaps = 0/26 (0%)
Query 18 FIIGVITALTVQSCTASMSVFWKNQN 43
FIIGV+ A + + FW ++
Sbjct 316 FIIGVMVARYDHTYQQGLERFWSRKD 341
> Gokush_gi|393707866|ref|YP_004732988.1|_DNA_replication_initiation_protein_[Microviridae_phi-CA82]
Length=353
Score = 18.9 bits (37), Expect = 7.3, Method: Composition-based stats.
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 0/28 (0%)
Query 26 LTVQSCTASMSVFWKNQNSKQDSQQTTQ 53
+T+Q C +F + K+D + T+
Sbjct 1 MTIQHCLMPKRIFKIGKMIKKDGSEGTE 28
> Gokush_Human_feces_B_068_Microviridae_AG0331_putative.VP1
Length=547
Score = 18.9 bits (37), Expect = 8.7, Method: Composition-based stats.
Identities = 7/26 (27%), Positives = 13/26 (50%), Gaps = 0/26 (0%)
Query 18 FIIGVITALTVQSCTASMSVFWKNQN 43
F+IGV+ A + + FW ++
Sbjct 393 FLIGVMVARYRHTYQQGLERFWSRKD 418
> Gokush_Human_feces_E_007_Microviridae_AG0412_putative.VP1
Length=573
Score = 18.9 bits (37), Expect = 9.1, Method: Composition-based stats.
Identities = 12/45 (27%), Positives = 17/45 (38%), Gaps = 2/45 (4%)
Query 1 MKITPNQWIELVKLIST--FIIGVITALTVQSCTASMSVFWKNQN 43
M +TP K + FIIGV+ S + FW +
Sbjct 403 MSVTPINESSFTKSLEEHGFIIGVLCVRHDHSYQQGLERFWSRSD 447
Lambda K H a alpha
0.316 0.124 0.355 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3675489