bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-6_CDS_annotation_glimmer3.pl_2_9

Length=48
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Microvirus_gi|89888096|ref|YP_512789.1|_gpA*_[Enterobacteria_ph...  20.4    1.2
  Microvirus_gi|89888095|ref|YP_512788.1|_gpA_[Enterobacteria_pha...  20.0    1.6
  Alpavirinae_CF7ML_001_Microviridae_AG0309_putative.VP1              18.5    5.5
  Microvirus_gi|176120946|ref|NP_040671.2|_shut_off_host_DNA_synt...  17.7    9.0


> Microvirus_gi|89888096|ref|YP_512789.1|_gpA*_[Enterobacteria_phage_ID18_sensu_lato]
Length=341

 Score = 20.4 bits (41),  Expect = 1.2, Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 0/29 (0%)

Query  16   IAKLLDNRKTVDSSLEGLTTQPIVLTLPT  44
            +AK ++ +  VD + +GL  Q    TL T
Sbjct  172  VAKYVNKKSDVDIAAKGLGNQKWNATLKT  200


> Microvirus_gi|89888095|ref|YP_512788.1|_gpA_[Enterobacteria_phage_ID18_sensu_lato]
Length=556

 Score = 20.0 bits (40),  Expect = 1.6, Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 0/29 (0%)

Query  16   IAKLLDNRKTVDSSLEGLTTQPIVLTLPT  44
            +AK ++ +  VD + +GL  Q    TL T
Sbjct  387  VAKYVNKKSDVDIAAKGLGNQKWNATLKT  415


> Alpavirinae_CF7ML_001_Microviridae_AG0309_putative.VP1
Length=692

 Score = 18.5 bits (36),  Expect = 5.5, Method: Composition-based stats.
 Identities = 9/21 (43%), Positives = 10/21 (48%), Gaps = 0/21 (0%)

Query  23  RKTVDSSLEGLTTQPIVLTLP  43
           R   D S   L TQP  + LP
Sbjct  16  RNGFDRSETHLYTQPAGMLLP  36


> Microvirus_gi|176120946|ref|NP_040671.2|_shut_off_host_DNA_synthesis_protein_[Enterobacteria_phage_G4_sensu_lato]
Length=341

 Score = 17.7 bits (34),  Expect = 9.0, Method: Composition-based stats.
 Identities = 5/18 (28%), Positives = 13/18 (72%), Gaps = 0/18 (0%)

Query  16   IAKLLDNRKTVDSSLEGL  33
            +AK ++ +  +D +++GL
Sbjct  172  VAKYVNKKSDIDMAVKGL  189



Lambda      K        H        a         alpha
   0.315    0.135    0.370    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3654882