bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-7_CDS_annotation_glimmer3.pl_2_7
Length=91
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_E_011_Microviridae_AG0385_putative.VP4 37.4 7e-06
Alpavirinae_Human_gut_22_017_Microviridae_AG0393_putative.VP4 28.9 0.004
Gokush_Human_gut_33_023_Microviridae_AG0363_putative.VP2 21.6 1.8
Alpavirinae_Human_feces_A_021_Microviridae_AG075_putative.VP4 21.2 2.1
Alpavirinae_Human_feces_D_031_Microviridae_AG0423_putative.VP4 21.2 2.3
Alpavirinae_Human_gut_33_017_Microviridae_AG0152_putative.VP4 21.2 2.5
Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4 20.8 3.6
Gokush_Human_gut_32_030_Microviridae_AG0187_putative.VP3 20.4 3.7
Gokush_Human_gut_31_045_Microviridae_AG0116_putative.VP3 20.4 3.7
Gokush_Human_gut_27_035_Microviridae_AG0165_putative.VP3 20.4 3.7
> Alpavirinae_Human_feces_E_011_Microviridae_AG0385_putative.VP4
Length=611
Score = 37.4 bits (85), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (28%), Positives = 44/97 (45%), Gaps = 17/97 (18%)
Query 7 DYWSKKELKFINDFYDYLSAHPESDS-FLKSRTVG----------FVCPPKENI------ 49
+YW KKE +F+ +++YL + + FL RT G + +E+
Sbjct 511 EYWKKKEYRFLTTYFEYLEGCNDDERLFLLVRTSGSGLATDSPHSWTYTQREDYVNCLSD 570
Query 50 SFWNDLNTTLSSLKNSVTQRIFQKVKHKNYNDISGLL 86
F+ TL L + + KVKHK +ND+ G+L
Sbjct 571 DFYKRYMNTLKWLTARTEKVLKDKVKHKEFNDMQGVL 607
> Alpavirinae_Human_gut_22_017_Microviridae_AG0393_putative.VP4
Length=562
Score = 28.9 bits (63), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 16/91 (18%)
Query 6 VDYWSKKELKFINDFYDYLSAHPESD---------SFLKSRTVGFVCPPKENISFWNDLN 56
V++W++ E + DFY L + + SF +R+V ++N +N+L
Sbjct 479 VNFWNRYEYNRLVDFYQTLEDSNDKELVDFELRNYSFRYNRSV------RDNERPYNEL- 531
Query 57 TTLSSLKNSVTQRIFQKVKHKNYNDISGLLF 87
+ L + + KVKHK ND+SG+
Sbjct 532 PLVRRLAAASLMKCRDKVKHKKVNDLSGIFL 562
> Gokush_Human_gut_33_023_Microviridae_AG0363_putative.VP2
Length=249
Score = 21.6 bits (44), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 17/38 (45%), Gaps = 0/38 (0%)
Query 10 SKKELKFINDFYDYLSAHPESDSFLKSRTVGFVCPPKE 47
S +K++N YL A E++ + VG+ E
Sbjct 140 SAANVKYLNSQDLYLQAKKENEKLIAGAQVGYYGALGE 177
> Alpavirinae_Human_feces_A_021_Microviridae_AG075_putative.VP4
Length=547
Score = 21.2 bits (43), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 0/34 (0%)
Query 56 NTTLSSLKNSVTQRIFQKVKHKNYNDISGLLFNL 89
N + ++ RI +KHK ND++ N+
Sbjct 514 NRLVQAVDEECHCRIQNSIKHKELNDLNYCFLNI 547
> Alpavirinae_Human_feces_D_031_Microviridae_AG0423_putative.VP4
Length=532
Score = 21.2 bits (43), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/81 (21%), Positives = 41/81 (51%), Gaps = 7/81 (9%)
Query 5 SVDYWSKKELKFINDFYDYLSAHPESDSFLKSRTVGFVCPPKENISFWNDLNTTLSSLKN 64
S+++++++E K + D + +S++F + F +E I + D + S ++
Sbjct 447 SINFYNERERKSLQDLFH------DSEAFESDWSDIFWDRRQEKIKRFVDSDYG-SLCRD 499
Query 65 SVTQRIFQKVKHKNYNDISGL 85
+ I +++KH+ ND G+
Sbjct 500 KLHSEIRKRIKHREINDAVGI 520
> Alpavirinae_Human_gut_33_017_Microviridae_AG0152_putative.VP4
Length=565
Score = 21.2 bits (43), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 8/13 (62%), Positives = 10/13 (77%), Gaps = 0/13 (0%)
Query 73 KVKHKNYNDISGL 85
KVKHK ND+ G+
Sbjct 548 KVKHKKINDMFGI 560
> Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4
Length=539
Score = 20.8 bits (42), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 12 KELKFINDFYDYLSAHPESDSFLK 35
+ ++ I+ FYDY S D +K
Sbjct 438 RAVRAIHSFYDYCSRRSLHDQLVK 461
> Gokush_Human_gut_32_030_Microviridae_AG0187_putative.VP3
Length=157
Score = 20.4 bits (41), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (48%), Gaps = 7/42 (17%)
Query 15 KFINDFYDYLSAHPESDSFLK-------SRTVGFVCPPKENI 49
KF N F ++L+A E+D F K + V P KE +
Sbjct 114 KFGNSFTEFLAASGEADFFDKLGIKAEEPKEVTPAIPVKEEV 155
> Gokush_Human_gut_31_045_Microviridae_AG0116_putative.VP3
Length=157
Score = 20.4 bits (41), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (48%), Gaps = 7/42 (17%)
Query 15 KFINDFYDYLSAHPESDSFLK-------SRTVGFVCPPKENI 49
KF N F ++L+A E+D F K + V P KE +
Sbjct 114 KFGNSFTEFLAASGEADFFDKLGIKAEEPKEVTPAIPVKEEV 155
> Gokush_Human_gut_27_035_Microviridae_AG0165_putative.VP3
Length=157
Score = 20.4 bits (41), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (48%), Gaps = 7/42 (17%)
Query 15 KFINDFYDYLSAHPESDSFLK-------SRTVGFVCPPKENI 49
KF N F ++L+A E+D F K + V P KE +
Sbjct 114 KFGNSFTEFLAASGEADFFDKLGIKAEEPKEVTPAIPVKEEV 155
Lambda K H a alpha
0.320 0.135 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4169376