bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-17_CDS_annotation_glimmer3.pl_2_4
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
gi|547312922|ref|WP_022044634.1| putative replication initiation... 124 2e-29
gi|609718275|emb|CDN73649.1| conserved hypothetical protein 95.1 2e-19
gi|649555288|gb|KDS61825.1| hypothetical protein M095_3808 80.9 2e-14
gi|547920048|ref|WP_022322419.1| putative replication protein 80.9 2e-14
gi|492501778|ref|WP_005867316.1| hypothetical protein 79.7 5e-14
gi|568293148|gb|ETN80369.1| hypothetical protein NECAME_18023 73.9 1e-11
gi|575094374|emb|CDL65755.1| unnamed protein product 72.4 5e-11
gi|313766930|gb|ADR80656.1| putative replication initiation protein 60.5 5e-07
gi|649562725|gb|KDS68909.1| hypothetical protein M096_3339 58.5 1e-06
gi|547839287|ref|WP_022246929.1| putative replication initiation... 55.8 1e-05
>gi|547312922|ref|WP_022044634.1| putative replication initiation protein [Alistipes finegoldii
CAG:68]
gi|524208442|emb|CCZ76638.1| putative replication initiation protein [Alistipes finegoldii
CAG:68]
Length=320
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 28/227 (12%)
Query 6 AACGDCYECRKQKQRQWMVRMSEENRQTP--NAYFLTLTIDDKSYKQIKQKYNLKDNNDI 63
CG C+ C+K Q+ +R+ E R+ P F+TLT +D S ++ KD N
Sbjct 42 VPCGYCHSCQKSYNNQYRIRLLYELRKYPPGTCLFVTLTFNDDSLEKFS-----KDTN-- 94
Query 64 ATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGL-------------GN 110
KA+RL L+R RK+ GK ++HWF+ E G R H HGI++ + G+
Sbjct 95 --KAVRLFLDRFRKVYGKQIRHWFVCEFG-TLHGRPHYHGILFNVPQALIDGYDSDMPGH 151
Query 111 GEKVTNNWKYGITFTGYFVNEKTIKYITKYMLKVDEKHPKFRGKVLCSAGIGAGYLKRED 170
+ + WKYG F GY V+++T YITKY+ K K R +V+ S GIG+ YL E+
Sbjct 152 HPLLASCWKYGFVFVGY-VSDETCSYITKYVTKSINGD-KVRPRVISSFGIGSNYLNTEE 209
Query 171 AKRHVYIPGKTNESYRMRNGEKLNLPIYYRNKIFTEEEREKLFLDKI 217
+ H + + + + + NG + +P YY NKIF++ +++ + +D++
Sbjct 210 SSLHK-LGNQRYQPFMVLNGFQQAMPRYYYNKIFSDVDKQNMVVDRL 255
>gi|609718275|emb|CDN73649.1| conserved hypothetical protein [Elizabethkingia anophelis]
Length=265
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 103/212 (49%), Gaps = 21/212 (10%)
Query 7 ACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNNDIAT- 65
CG C ECRK + W R++EE + + +A+F+TLT Y + Y+ DN I+
Sbjct 24 PCGKCLECRKARTNSWFARLTEELKVSKSAHFVTLT-----YSDVYLPYS--DNGLISLD 76
Query 66 -KAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLGNGEKVTNNWKYGITF 124
+ +L ++R RKL +K++ + E G +T R H H IV+G+ N + W+ G
Sbjct 77 YRDFQLFMKRARKLQKSKIKYFLVGEYG-AQTYRPHYHAIVFGVENIDAFLGEWRMGNVH 135
Query 125 TGYFVNEKTIKYITKYMLK-------VDEKHPKFRGKVLCSAGIGAGYLKREDAKRHVYI 177
G V K+I Y KY K D + K L S G+G +L K Y
Sbjct 136 AGT-VTAKSIYYTLKYCTKSITEGPDKDPDDDRKPEKALMSKGLGLSHLTESMIK---YY 191
Query 178 PGKTNESYRMRNGEKLNLPIYYRNKIFTEEER 209
+ S+ + G + LP YYR+K+F++ E+
Sbjct 192 KDDVSRSFSLLGGTTIALPRYYRDKVFSDIEK 223
>gi|649555288|gb|KDS61825.1| hypothetical protein M095_3808 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649560564|gb|KDS66872.1| hypothetical protein M095_2449 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649561011|gb|KDS67298.1| hypothetical protein M095_2409 [Parabacteroides distasonis str.
3999B T(B) 4]
Length=284
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 126/275 (46%), Gaps = 34/275 (12%)
Query 5 TAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDK--SYKQIKQKYNLKDNND 62
CG C CRK K++ W+ R+ E + P + F+TLT DD+ I +
Sbjct 14 AVPCGRCVNCRKNKRQSWVYRLQAEADEYPFSLFVTLTYDDEHIPTAMIGEDLFKTTVGV 73
Query 63 IATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLG-----NGEKVTNN 117
++ + I+L ++R+RK + +F+T + R H H I++G G+ +
Sbjct 74 VSKRDIQLFMKRLRKKYAQYRLRYFLTSEYGSQGGRPHYHMILFGFPFTGKHGGDLLAEC 133
Query 118 WKYGITFTGYFVNEKTIKYITKYM---------LKVDEKHPKFRGKVLCS--AGIGAGYL 166
WK G + + K I Y+TKYM LK +++ F +LCS GIG +L
Sbjct 134 WKNGFV-QAHPLTTKEISYVTKYMYEKSMIPDILKGVKEYQPF---MLCSKMPGIGYHFL 189
Query 167 KREDAKRHVYIPGKTNESYRMRNGEKLNLPIYYRNKIFTE-------EEREKLFLDKIEK 219
+ + + P + R NG ++ +P YY +K++ + E RE F++++++
Sbjct 190 REQILDFYRLHP---RDYVRAFNGMRMAMPRYYADKLYDDDMKEYLKELREAFFINQMQQ 246
Query 220 GIIYILGIKIDLK--TEELRYNGVLASERERCERL 252
+ + L+ ++L LA ER ++L
Sbjct 247 EWYHYINTSPRLRYIADQLETESKLAYERRAEDKL 281
>gi|547920048|ref|WP_022322419.1| putative replication protein [Parabacteroides merdae CAG:48]
gi|524592960|emb|CDD13572.1| putative replication protein [Parabacteroides merdae CAG:48]
Length=278
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 112/239 (47%), Gaps = 36/239 (15%)
Query 6 AACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNN--DI 63
CG C CR+ K++ W+ R+ E ++ P + F+TLT DD+ + +L N +
Sbjct 10 VPCGWCVNCRQNKRQSWVYRLQAEAKEYPLSLFVTLTYDDEHLPIERIGSDLFQTNVAVV 69
Query 64 ATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLG-----NGEKVTNNW 118
+ + ++L ++R+RK +F+T K R H H I++G G+ + W
Sbjct 70 SKRDVQLFMKRLRKKYEDYKMRYFVTSEYGAKNGRPHYHMILFGFPFTGKMAGDLLAECW 129
Query 119 KYGITFTGYFVNEKTIKYITKYM--------LKVDEKHPKFRGKVLCS--AGIGAGYLKR 168
+ G + + K I Y+ KYM + DEK K++ +LCS GIG G++K
Sbjct 130 QNGFV-QAHPLTIKEIAYVCKYMYEKSMCPEILRDEK--KYKPFMLCSRNPGIGFGFMKA 186
Query 169 ---EDAKRHVYIPGKTNESYRMRNGEKLNLPIYYRNKI-------FTEEEREKLFLDKI 217
E +RH + R G K+ +P YY +K+ F +E RE+ F K+
Sbjct 187 DIIEFYRRH------PRDYVRAWAGHKMAMPRYYADKLYDDDMKAFLKEMREEFFRHKM 239
>gi|492501778|ref|WP_005867316.1| hypothetical protein [Parabacteroides distasonis]
gi|409230407|gb|EKN23271.1| hypothetical protein HMPREF1059_03256 [Parabacteroides distasonis
CL09T03C24]
Length=284
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 26/237 (11%)
Query 5 TAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYK--QIKQKYNLKDNND 62
CG C CRK K++ W+ R+ E + P + F+TLT DD+ I +
Sbjct 14 AVPCGRCVNCRKNKRQSWVYRLQAEADEYPFSLFVTLTYDDEHMPTAMIGEDLFKSTVGV 73
Query 63 IATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLG-----NGEKVTNN 117
++ + I+L ++R+RK + +F+T + R H H I++G G+ +
Sbjct 74 VSKRDIQLFMKRLRKKYDQYRLRYFLTSEYGSQGGRPHYHMILFGFPFTGKHGGDLLAEC 133
Query 118 WKYGITFTGYFVNEKTIKYITKYMLK------VDEKHPKFRGKVLCS--AGIGAGYLKRE 169
WK G + + K I Y+TKYM + + + +++ +LCS GIG +L+ +
Sbjct 134 WKNGFV-QAHPLTTKEIAYVTKYMYEKSMVPDILKDVKEYQPFMLCSRIPGIGYHFLREQ 192
Query 170 DAKRHVYIPGKTNESYRMRNGEKLNLPIYYRNKIFTE-------EEREKLFLDKIEK 219
+ P + R NG ++ +P YY +K++ + E RE F++++++
Sbjct 193 ILDFYRLHP---RDYVRAFNGMRMAMPRYYADKLYDDDMKEYLKELREAFFINQMQQ 246
>gi|568293148|gb|ETN80369.1| hypothetical protein NECAME_18023 [Necator americanus]
Length=345
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 104/232 (45%), Gaps = 40/232 (17%)
Query 1 LRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDN 60
L V CG C C++++ W+ R+ +E Q NA F+TLT D + K + D
Sbjct 15 LEKVPVPCGRCPPCKRRRVDSWVFRLLQEELQHENASFVTLTYDTRFVPISKNGFMTLDR 74
Query 61 NDIATKAIRLCLERVRKLT-GKSVKHWFITELGHEKTERLHLHGIVWGLGNGEKVTNNWK 119
+ ++R+RKL G+ +K++ E G ++ R H H I++G+ + W
Sbjct 75 GEFPR-----YMKRLRKLVPGRKLKYYMCGEYGSQRF-RPHYHAIIFGVPQDSLFADAW- 127
Query 120 YGITFTG--------YFVNEKTIKYITKYMLKV--------DEKHPKFRGKVLCSAGIGA 163
T G V K+I Y KY+ K D++ P+F L S G+G
Sbjct 128 ---TLNGDSLGGVVVGTVTGKSIAYTMKYIDKSTWKQKHGRDDRVPEFS---LMSKGMGV 181
Query 164 GYLKREDAKRHVYIPGKTNESYRM----RNGEKLNLPIYYRNKIFTEEEREK 211
YL + + H + R+ G ++ +P YYR KI+++++ +K
Sbjct 182 SYLTPQMVEYH------KEDISRLFCTREGGSRIAMPRYYRQKIYSDDDLKK 227
>gi|575094374|emb|CDL65755.1| unnamed protein product [uncultured bacterium]
Length=487
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 71/158 (45%), Gaps = 20/158 (13%)
Query 5 TAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNND-- 62
CG CY+C+ K W VR SEE +YF TLT+D + I L D +
Sbjct 25 VVPCGHCYDCKSAKTTDWQVRCSEELNNNSQSYFYTLTLDPRF---IDTYGTLPDGSPRY 81
Query 63 -IATKAIRLCLERVRKLTGK---SVKHWFITELGHEKTERLHLHGIVWGLGNGEK----- 113
+ I+L L+R+RK K S+K+ + ELG E T R H H I + +
Sbjct 82 VFNKRHIQLFLKRLRKALSKYNISLKYVIVGELG-ETTHRPHYHAIFYLSSSVNPFKFRI 140
Query 114 -VTNNWKYGITFT----GYFVNEKTIKYITKYMLKVDE 146
V N+W G + G +N + Y+ KYM K D
Sbjct 141 MVRNSWSLGFIKSGDNNGIILNNDAVSYVIKYMHKTDS 178
>gi|313766930|gb|ADR80656.1| putative replication initiation protein [Uncultured Microviridae]
Length=402
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/153 (27%), Positives = 74/153 (48%), Gaps = 24/153 (16%)
Query 7 ACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNNDIATK 66
CG C+ CR Q R+W +R E + + F+TLTI+ ++ ++ + ++L+ K
Sbjct 129 PCGQCWGCRLQHSREWAIRCMHEAQMHDHNCFITLTINPETLERRPRPWSLE------KK 182
Query 67 AIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWG------------LGN---- 110
+ + R+R+ GK +K++ E G E +R H H I++G LGN
Sbjct 183 EFQEFVHRLRRKIGKKIKYFHCGEYGDE-NKRPHYHAIIFGYDFPDKQLWERKLGNELYI 241
Query 111 GEKVTNNWKYGITFTGYFVNEKTIKYITKYMLK 143
++ N W +G G E + Y+ +Y++K
Sbjct 242 SPELENLWPHGYHRIGACTYE-SAHYVARYVMK 273
>gi|649562725|gb|KDS68909.1| hypothetical protein M096_3339 [Parabacteroides distasonis str.
3999B T(B) 6]
Length=250
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 112/255 (44%), Gaps = 36/255 (14%)
Query 26 MSEENRQTPNAYFLTLTIDDK--SYKQIKQKYNLKDNNDIATKAIRLCLERVRKLTGKSV 83
M E + P + F+TLT DD+ I + ++ + I+L ++R+RK +
Sbjct 1 MQAEADEYPFSLFVTLTYDDEHIPTAMIGEDLFKTTVGVVSKRDIQLFMKRLRKKYAQYR 60
Query 84 KHWFITELGHEKTERLHLHGIVWGLG-----NGEKVTNNWKYGITFTGYFVNEKTIKYIT 138
+F+T + R H H I++G G+ + WK G + + K I Y+T
Sbjct 61 LRYFLTSEYGSQGGRPHYHMILFGFPFTGKHGGDLLAECWKNGFV-QAHPLTTKEISYVT 119
Query 139 KYMLK----------VDEKHPKFRGKVLCS--AGIGAGYLKREDAKRHVYIPGKTNESYR 186
KYM + V E P +LCS GIG +L+ + + P + R
Sbjct 120 KYMYEKSMIPDILKGVKEYQP----FMLCSKMPGIGYHFLREQILDFYRLHP---RDYVR 172
Query 187 MRNGEKLNLPIYYRNKIFTE-------EEREKLFLDKIEKGIIYILGIKIDLK--TEELR 237
NG ++ +P YY +K++ + E RE F++++++ + + L+ ++L
Sbjct 173 AFNGMRMAMPRYYADKLYDDDMKEYLKELREAFFINQMQQEWYHYINTSPRLRYIADQLE 232
Query 238 YNGVLASERERCERL 252
LA ER ++L
Sbjct 233 TESKLAYERRAEDKL 247
>gi|547839287|ref|WP_022246929.1| putative replication initiation protein [Clostridium sp. CAG:306]
gi|524476587|emb|CDC18659.1| putative replication initiation protein [Clostridium sp. CAG:306]
Length=292
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 92/216 (43%), Gaps = 48/216 (22%)
Query 4 VTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTID-----DKSYKQIKQKYNLK 58
V CG C C++QK + W +++ E+ + F+TLT D DK+ K +K KY
Sbjct 15 VIVKCGKCDTCKRQKAQDWAIKLINESLYHKESCFITLTFDNKILLDKNSKAVK-KYGAN 73
Query 59 DN----NDIATKAIRLCLERVR-KLTGKSVKHWFITELGHEKTERLHLHGIVWGLG---- 109
D + K + ++R+R K K + ++ + E G EKT R H H I++G+
Sbjct 74 AGFVFKTDYSMKYFQKFIKRLRKKFPEKRISYFHVAEYG-EKTHRPHHHAILFGINFKED 132
Query 110 --------------NGEKVTNNWKYGITFTGYFVNEKTIKYITKYMLKV---DEKHPKFR 152
E + + W G T T N I YI +Y LK +E + K+
Sbjct 133 RKECQISKSGHPQMYSETLQSLWACGNT-TLQDCNSNNIIYIAQYSLKKFKNNELNKKYD 191
Query 153 GKVLCS--------------AGIGAGYLKREDAKRH 174
K+ S I GYL+ +D KR+
Sbjct 192 TKMTFSNRCKMNVKFIRRHPENIKKGYLQDKDGKRY 227
Lambda K H a alpha
0.319 0.137 0.415 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1719536379408