bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-18_CDS_annotation_glimmer3.pl_2_1
Length=131
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094432|emb|CDL65805.1| unnamed protein product 53.9 1e-06
gi|575094414|emb|CDL65789.1| unnamed protein product 44.7 0.002
gi|575094497|emb|CDL65863.1| unnamed protein product 43.9 0.004
gi|528223861|gb|EPY23515.1| hypothetical protein AGDE_12781 36.6 2.5
>gi|575094432|emb|CDL65805.1| unnamed protein product [uncultured bacterium]
Length=158
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/110 (34%), Positives = 58/110 (53%), Gaps = 2/110 (2%)
Query 2 NKRYEEGRKPFFSNPGEKMRKQYVWSKD-EKGNKKLIETEPIDIQAEIESYADECDIKNI 60
N+ E RK S G+ Y + + + G K+L + +++ +E I+NI
Sbjct 5 NRANERERKRIKSATGDGTEPVYEYEVNKDTGRKELRLVGRESVYDKVQESLEETKIQNI 64
Query 61 VRKASFDPEFAKSLVDSAKTDEILDITEWPTDIHEYHAMIATAQANAMKL 110
VR+A+FDPE S + + ++DIT PT+IHEYH + TAQ + KL
Sbjct 65 VRRATFDPEILGS-TEWMEKQGMVDITGLPTNIHEYHDFMLTAQKDFDKL 113
>gi|575094414|emb|CDL65789.1| unnamed protein product [uncultured bacterium]
Length=167
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (49%), Gaps = 5/86 (6%)
Query 16 PGEKMRKQYVWSKDEKGNKKLIETEPIDIQAEIESYADECDIKNIVRKASFDPEFAKSLV 75
PG ++ Y+ E G L + + AEI+SY DECD+ +I+ + FA
Sbjct 20 PGNELEPHYIEKIGENGRTYLEKDGETNTYAEIQSYKDECDVHSILCRY-----FAGDTS 74
Query 76 DSAKTDEILDITEWPTDIHEYHAMIA 101
++ +D T+ PT HE + ++A
Sbjct 75 VLSRQGVYIDATQLPTTYHEMYNLMA 100
>gi|575094497|emb|CDL65863.1| unnamed protein product [uncultured bacterium]
Length=170
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (4%)
Query 4 RYEEGRKPFFSNPGEKMRKQYVWSKDEKGNKKLIETEPIDIQAEIESYADECDIKNIVRK 63
+Y ++ F S G+ + Y E G ++L + ID+ A+I+SY D CDI I+ +
Sbjct 6 KYNRNKEVFKSTSGDGYQPTYKMRVHEDGKRELEKVGRIDLYAQIQSYKDSCDINYILER 65
Query 64 ASFDPEFAKSLVDSAKTDEILDITEWPTDIHEYHAMIATAQA 105
+ E A S + D T PT++ E + A+A
Sbjct 66 FARGDESALSKIQGVYG----DFTAMPTNLAELQQRVVDAEA 103
>gi|528223861|gb|EPY23515.1| hypothetical protein AGDE_12781 [Angomonas deanei]
Length=214
Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/88 (33%), Positives = 46/88 (52%), Gaps = 16/88 (18%)
Query 38 ETEPIDIQAEIESYADECDIKNIVRKASFDPEFAKSLVDSAKTDEILDITEWPTDIHEYH 97
E +P+D+ A + ++ D ++ D FA +LVDS +TDE+L+ +Y
Sbjct 126 EPQPLDVTA---AKNEQLDSATEASQSLLDSNFA-ALVDSGETDEVLE---------QYK 172
Query 98 AMIATAQANAMKLQQMQ---EDIANKPK 122
A++A A+A LQQ E+ ANK K
Sbjct 173 AIVAEAEAKIRALQQTNTGDEETANKAK 200
Lambda K H a alpha
0.309 0.126 0.353 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 435513260292