bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-19_CDS_annotation_glimmer3.pl_2_3

Length=83
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15294108|gb|AAK95231.1|  envelope glycoprotein                     35.8    1.5
gi|410180686|gb|AFV64156.1|  envelope glycoprotein                    32.3    7.9


>gi|15294108|gb|AAK95231.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length=203

 Score = 35.8 bits (81),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 0/51 (0%)

Query  4   EFKDMKECFQIRPTDESGEKWMITIGNHLATEEVFKSRKAAEMKINKTDWN  54
           + KD    + +RP + +     I  G    T E+  + + A  K+NKTDWN
Sbjct  18  QLKDPVPIYCVRPNNNTRRSITIGPGRAFYTGEIIGNIRKAYCKLNKTDWN  68


>gi|410180686|gb|AFV64156.1| envelope glycoprotein, partial [Human immunodeficiency virus 
1]
Length=79

 Score = 32.3 bits (72),  Expect = 7.9, Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (7%)

Query  14  IRPTDESGEKWMITIGN-HLATEEVFKSRKAAEMKINKTDW-NLVSAFFFAIKEAVEFEN  71
           IRP + + +   I  G   LATEE+    + A   IN+T+W N +S     ++E  +FEN
Sbjct  10  IRPNNNTRKGIHIGPGRVFLATEEIIGDIRKAHCNINRTEWNNTLSKIVGELRE--QFEN  67

Query  72  K  72
           K
Sbjct  68  K  68



Lambda      K        H        a         alpha
   0.315    0.129    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 432584175213