bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-1_CDS_annotation_glimmer3.pl_2_7
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094430|emb|CDL65810.1| unnamed protein product 108 6e-24
gi|575096057|emb|CDL66940.1| unnamed protein product 63.9 2e-08
gi|575094545|emb|CDL65905.1| unnamed protein product 62.0 8e-08
gi|575094568|emb|CDL65929.1| unnamed protein product 60.1 3e-07
gi|393707865|ref|YP_004732987.1| structural protein VP2 58.2 1e-06
gi|575094416|emb|CDL65791.1| unnamed protein product 56.6 6e-06
gi|9791177|ref|NP_063896.1| capsid protein VP2-related protein 54.7 7e-06
gi|17402852|ref|NP_510874.1| capsid protein VP2-related protein 54.7 7e-06
gi|77020116|ref|YP_338241.1| putative minor spike 54.7 8e-06
gi|47566144|ref|YP_022482.1| structural protein 54.7 8e-06
>gi|575094430|emb|CDL65810.1| unnamed protein product [uncultured bacterium]
Length=274
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 60/75 (80%), Gaps = 0/75 (0%)
Query 89 QGKYNSQSMLKQMGYNTLQAIMQGVYNHIENSVAMNYNSAEALANREWQEHMSSTAYQRA 148
QG YN +SML MGYNTL AI QG+YN I AM YNSA+A+ +W+EHMS+T+YQRA
Sbjct 87 QGNYNFKSMLTSMGYNTLGAITQGIYNSISQGAAMQYNSAQAMRQMKWEEHMSNTSYQRA 146
Query 149 VEDMKKAGLNPILAF 163
+EDM+KAGLNPILA+
Sbjct 147 MEDMRKAGLNPILAY 161
>gi|575096057|emb|CDL66940.1| unnamed protein product [uncultured bacterium]
Length=275
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 43/60 (72%), Gaps = 0/60 (0%)
Query 103 YNTLQAIMQGVYNHIENSVAMNYNSAEALANREWQEHMSSTAYQRAVEDMKKAGLNPILA 162
+N QA +Q + +N+ AM +NS EA NR+WQE MS+TA+QR V+D+ AGLNP+L+
Sbjct 38 WNAEQAEIQRDWQEAQNAKAMQFNSMEAAKNRKWQEMMSNTAHQREVKDLMAAGLNPVLS 97
>gi|575094545|emb|CDL65905.1| unnamed protein product [uncultured bacterium]
Length=325
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (72%), Gaps = 0/60 (0%)
Query 103 YNTLQAIMQGVYNHIENSVAMNYNSAEALANREWQEHMSSTAYQRAVEDMKKAGLNPILA 162
+N QA + +N++AM ++SAEA NR+WQ +MS+TA+QR V D+K AGLNP+L+
Sbjct 37 FNASQAAANRNWQQQQNNIAMQFSSAEAAKNRDWQSYMSNTAHQREVADLKAAGLNPVLS 96
>gi|575094568|emb|CDL65929.1| unnamed protein product [uncultured bacterium]
Length=310
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/45 (58%), Positives = 35/45 (78%), Gaps = 0/45 (0%)
Query 118 ENSVAMNYNSAEALANREWQEHMSSTAYQRAVEDMKKAGLNPILA 162
+N +AM +N+AEA NR WQE MS+TA+QR V D+ AGLNP+L+
Sbjct 71 QNRIAMQFNAAEAEKNRNWQEIMSNTAHQREVNDLMAAGLNPVLS 115
>gi|393707865|ref|YP_004732987.1| structural protein VP2 [Microviridae phi-CA82]
gi|311336637|gb|ADP89808.1| structural protein VP2 [Microviridae phi-CA82]
Length=234
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 0/59 (0%)
Query 105 TLQAIMQGVYNHIENSVAMNYNSAEALANREWQEHMSSTAYQRAVEDMKKAGLNPILAF 163
T QA Q +N + + +N+ EA NR+WQE MS+TA QR ++D +KAGLNPI A
Sbjct 9 TAQADKQNKWNAEQTEKSNQFNAQEAQKNRDWQEQMSNTALQRKMQDAEKAGLNPIFAL 67
>gi|575094416|emb|CDL65791.1| unnamed protein product [uncultured bacterium]
Length=311
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/59 (46%), Positives = 35/59 (59%), Gaps = 0/59 (0%)
Query 104 NTLQAIMQGVYNHIENSVAMNYNSAEALANREWQEHMSSTAYQRAVEDMKKAGLNPILA 162
NT+ ++ + N + A YN EA A R W + M TAYQ V+D+K AGLNPILA
Sbjct 126 NTISNVVSNLSNAASQTSAQRYNREEAQAERSWAQSMRQTAYQDTVKDLKAAGLNPILA 184
>gi|9791177|ref|NP_063896.1| capsid protein VP2-related protein [Chlamydia pneumoniae phage
CPAR39]
gi|7190962|gb|AAF39722.1| capsid protein VP2-related protein [Chlamydia pneumoniae phage
CPAR39]
Length=186
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (62%), Gaps = 6/65 (9%)
Query 102 GYNTLQAIMQGVYNHIENSVAMNYNSAEALANRE---WQEHMSSTAYQRAVEDMKKAGLN 158
G + L I GV ++ A N+ RE +QE MS+TAYQRA+EDMKKAGLN
Sbjct 20 GLSFLPGIASGVLGYLG---AQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 159 PILAF 163
P+LAF
Sbjct 77 PMLAF 81
>gi|17402852|ref|NP_510874.1| capsid protein VP2-related protein [Guinea pig Chlamydia phage]
Length=186
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (62%), Gaps = 6/65 (9%)
Query 102 GYNTLQAIMQGVYNHIENSVAMNYNSAEALANRE---WQEHMSSTAYQRAVEDMKKAGLN 158
G + L I GV ++ A N+ RE +QE MS+TAYQRA+EDMKKAGLN
Sbjct 20 GLSFLPGIASGVLGYLG---AQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 159 PILAF 163
P+LAF
Sbjct 77 PMLAF 81
>gi|77020116|ref|YP_338241.1| putative minor spike [Chlamydia phage 4]
gi|59940015|gb|AAX12544.1| putative minor spike [Chlamydia phage 4]
Length=186
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (62%), Gaps = 6/65 (9%)
Query 102 GYNTLQAIMQGVYNHIENSVAMNYNSAEALANRE---WQEHMSSTAYQRAVEDMKKAGLN 158
G + L I GV ++ A N+ RE +QE MS+TAYQRA+EDMKKAGLN
Sbjct 20 GLSFLPGIASGVLGYLG---AQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 159 PILAF 163
P+LAF
Sbjct 77 PMLAF 81
>gi|47566144|ref|YP_022482.1| structural protein [Chlamydia phage 3]
gi|47522479|emb|CAD79480.1| structural protein [Chlamydia phage 3]
Length=186
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (62%), Gaps = 6/65 (9%)
Query 102 GYNTLQAIMQGVYNHIENSVAMNYNSAEALANRE---WQEHMSSTAYQRAVEDMKKAGLN 158
G + L I GV ++ A N+ RE +QE MS+TAYQRA+EDMKKAGLN
Sbjct 20 GLSFLPGIASGVLGYLG---AQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLN 76
Query 159 PILAF 163
P+LAF
Sbjct 77 PMLAF 81
Lambda K H a alpha
0.311 0.124 0.362 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1498703630544