bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-22_CDS_annotation_glimmer3.pl_2_1
Length=77
Score E
Sequences producing significant alignments: (Bits) Value
gi|663709595|ref|WP_030486300.1| secretion system protein 35.8 1.2
gi|663334719|ref|WP_030334213.1| secretion system protein 35.8 1.3
gi|494718791|ref|WP_007454657.1| secretion system protein 35.4 1.7
gi|517063736|ref|WP_018252554.1| secretion system protein 34.7 3.9
gi|556601282|ref|WP_023357603.1| type II secretion system protein 34.3 4.1
gi|653676060|ref|WP_027660609.1| secretion system protein 34.3 5.2
gi|517550543|ref|WP_018720751.1| secretion system protein 33.9 6.4
gi|648633537|ref|WP_026325288.1| secretion system protein 33.9 6.8
gi|648579717|ref|WP_026271468.1| secretion system protein 33.5 7.6
gi|653652262|ref|WP_027654755.1| secretion system protein 33.5 8.0
>gi|663709595|ref|WP_030486300.1| secretion system protein [Micromonospora chokoriensis]
Length=212
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query 4 ATSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV 45
A AS +GV++ VLP CF FIL+ +PV+ + DV
Sbjct 171 AAEASARRAGVLI-VLPLGLCFLPAFILAGLVPVIVAVLGDV 211
>gi|663334719|ref|WP_030334213.1| secretion system protein [Micromonospora parva]
Length=187
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query 4 ATSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV 45
A AS +GV++ VLP CF FIL+ +PV+ + DV
Sbjct 146 AAEASARRAGVLI-VLPLGLCFLPAFILAGLVPVIVAVLGDV 186
>gi|494718791|ref|WP_007454657.1| secretion system protein [Micromonospora lupini]
gi|385888657|emb|CCH15495.1| Putative type II secretion system protein [Micromonospora lupini
str. Lupac 08]
Length=227
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query 4 ATSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV 45
A AS +GV++ VLP CF FIL+ +PV+ + DV
Sbjct 186 AAEASARRAGVLI-VLPLGLCFLPAFILAGLVPVIVAVLGDV 226
>gi|517063736|ref|WP_018252554.1| secretion system protein [Salinispora pacifica]
Length=253
Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query 4 ATSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV 45
A A+ SGV++ VLP CF FIL+ +PV+ + DV
Sbjct 212 AAEATARRSGVLI-VLPLGLCFLPAFILAGLVPVIVAVLGDV 252
>gi|556601282|ref|WP_023357603.1| type II secretion system protein [Actinoplanes friuliensis]
gi|556563288|ref|YP_008731713.1| type II secretion system protein [Actinoplanes friuliensis DSM
7358]
gi|556031413|gb|AGZ38660.1| type II secretion system protein [Actinoplanes friuliensis DSM
7358]
Length=215
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (59%), Gaps = 1/41 (2%)
Query 5 TSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV 45
T A+ +GV++ VLP CF F+L+ +PVV + DV
Sbjct 175 TDAAAQRAGVLI-VLPLGLCFLPAFVLAGLVPVVVAVLGDV 214
>gi|653676060|ref|WP_027660609.1| secretion system protein [Salinispora pacifica]
Length=253
Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 18/43 (42%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query 3 LATSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV 45
+A A+ SGV++ VLP CF FIL+ +PVV + DV
Sbjct 211 MAAEATARRSGVLI-VLPLGLCFLPAFILAGLVPVVVAVLGDV 252
>gi|517550543|ref|WP_018720751.1| secretion system protein [Salinispora pacifica]
Length=253
Score = 33.9 bits (76), Expect = 6.4, Method: Composition-based stats.
Identities = 18/43 (42%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query 3 LATSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV 45
+A A+ SGV++ VLP CF FIL+ +PVV + DV
Sbjct 211 MAAEATARRSGVLI-VLPLGLCFLPAFILAGLVPVVVAVLGDV 252
>gi|648633537|ref|WP_026325288.1| secretion system protein [Salinispora pacifica]
Length=253
Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query 4 ATSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV 45
A A+ SGV++ VLP CF FIL+ +PV+ + DV
Sbjct 212 AAEATARRSGVLI-VLPLGLCFLPAFILAGLVPVIVAVLGDV 252
>gi|648579717|ref|WP_026271468.1| secretion system protein [Salinispora pacifica]
Length=253
Score = 33.5 bits (75), Expect = 7.6, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query 4 ATSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV 45
A A+ SGV++ VLP CF FIL+ +PV+ + DV
Sbjct 212 AAEATARRSGVLI-VLPLGLCFLPAFILAGLVPVIVAVLGDV 252
>gi|653652262|ref|WP_027654755.1| secretion system protein [Salinispora pacifica]
Length=253
Score = 33.5 bits (75), Expect = 8.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query 4 ATSASPSSSGVIVTVLPYWFCFTINFILSSFIPVVTIFMVDV 45
A A+ SGV++ VLP CF FIL+ +PV+ + DV
Sbjct 212 AAEATARRSGVLI-VLPLGLCFLPAFILAGLVPVIVAVLGDV 252
Lambda K H a alpha
0.330 0.141 0.448 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 441112126275