bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-22_CDS_annotation_glimmer3.pl_2_2

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|547227295|ref|WP_021964313.1|  putative uncharacterized protein    35.0    3.6
gi|505924261|ref|WP_015718361.1|  16S rRNA methyltransferase          34.3    6.4
gi|568398149|gb|ETN87716.1|  16S rRNA methyltransferase               33.9    6.8
gi|655045021|ref|WP_028493654.1|  16S rRNA methyltransferase          33.9    7.0
gi|648637244|ref|WP_026328995.1|  16S rRNA methyltransferase          33.9    7.0
gi|676387841|ref|XP_009037199.1|  hypothetical protein AURANDRAFT...  33.9    8.1


>gi|547227295|ref|WP_021964313.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
 gi|524105244|emb|CCY80613.1| putative uncharacterized protein [Prevotella sp. CAG:1185]
Length=748

 Score = 35.0 bits (79),  Expect = 3.6, Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 37/65 (57%), Gaps = 8/65 (12%)

Query  10   DVFKVLPTTQEEKEYMIVIGKHLATTEKFPTREAAEEENQLCRLESN--------CGNDL  61
            DVF+++  T++++    ++ KH+A T+ F TR A E+ N++    SN        CGN L
Sbjct  522  DVFQLMMRTKDKEIVWDLLSKHVARTQSFVTRFALEQYNRIVEGISNESLRELRHCGNAL  581

Query  62   CLQRS  66
              ++S
Sbjct  582  KEEQS  586


>gi|505924261|ref|WP_015718361.1| 16S rRNA methyltransferase [Thermus scotoductus]
 gi|320451554|ref|YP_004203650.1| 16S rRNA methyltransferase GidB [Thermus scotoductus SA-01]
 gi|320151723|gb|ADW23101.1| 16S rRNA methyltransferase GidB [Thermus scotoductus SA-01]
Length=246

 Score = 34.3 bits (77),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (58%), Gaps = 1/38 (3%)

Query  14   VLPTTQEEKEYMIVIGKHLATTEKFPTREAAEEENQLC  51
            VLP  QEE+  ++V+ K  +T  ++P R    E N LC
Sbjct  210  VLPVAQEERN-LVVVPKEASTPARYPRRPGVPERNPLC  246


>gi|568398149|gb|ETN87716.1| 16S rRNA methyltransferase [Thermus sp. NMX2.A1]
Length=242

 Score = 33.9 bits (76),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (58%), Gaps = 1/38 (3%)

Query  14   VLPTTQEEKEYMIVIGKHLATTEKFPTREAAEEENQLC  51
            VLP  QEE+  ++V+ K  +T  ++P R    E N LC
Sbjct  206  VLPVAQEERN-LVVVPKEASTPARYPRRPGVPERNPLC  242


>gi|655045021|ref|WP_028493654.1| 16S rRNA methyltransferase [Thermus antranikianii]
Length=242

 Score = 33.9 bits (76),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (58%), Gaps = 1/38 (3%)

Query  14   VLPTTQEEKEYMIVIGKHLATTEKFPTREAAEEENQLC  51
            VLP  QEE+  ++V+ K  +T  K+P R     +N LC
Sbjct  206  VLPVVQEERN-LVVVAKEASTPAKYPRRPGVPGKNPLC  242


>gi|648637244|ref|WP_026328995.1| 16S rRNA methyltransferase [Thermus scotoductus]
Length=242

 Score = 33.9 bits (76),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (58%), Gaps = 1/38 (3%)

Query  14   VLPTTQEEKEYMIVIGKHLATTEKFPTREAAEEENQLC  51
            VLP  QEE+  ++V+ K  +T  ++P R    E N LC
Sbjct  206  VLPVAQEERN-LVVVPKEASTPARYPRRPGVPERNPLC  242


>gi|676387841|ref|XP_009037199.1| hypothetical protein AURANDRAFT_64331 [Aureococcus anophagefferens]
 gi|323451941|gb|EGB07816.1| hypothetical protein AURANDRAFT_64331 [Aureococcus anophagefferens]
Length=392

 Score = 33.9 bits (76),  Expect = 8.1, Method: Composition-based stats.
 Identities = 23/63 (37%), Positives = 34/63 (54%), Gaps = 9/63 (14%)

Query  4    EFNDMKDVF---KVLPTTQEEKEYMIVIGKHLATTEKFPTREAAEEENQLCRLESNCG-N  59
            E ND+  VF   +V  T  E+  Y  V GKHL T   FP ++  +++N L  ++ NC  N
Sbjct  52   ELNDL--VFGGLQVGYTPNEKTTYESVCGKHLYT---FPNQDYYDDKNNLVMMKPNCSMN  106

Query  60   DLC  62
            + C
Sbjct  107  EFC  109



Lambda      K        H        a         alpha
   0.316    0.132    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 429741524859