bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-29_CDS_annotation_glimmer3.pl_2_1
Length=218
Score E
Sequences producing significant alignments: (Bits) Value
gi|575096056|emb|CDL66947.1| unnamed protein product 364 4e-120
gi|575094544|emb|CDL65904.1| unnamed protein product 351 3e-115
gi|575094492|emb|CDL65859.1| unnamed protein product 341 3e-111
gi|575094572|emb|CDL65928.1| unnamed protein product 334 1e-108
gi|575094496|emb|CDL65862.1| unnamed protein product 315 8e-101
gi|575094431|emb|CDL65804.1| unnamed protein product 264 3e-81
gi|575094415|emb|CDL65790.1| unnamed protein product 251 4e-76
gi|444297919|dbj|GAC77754.1| major capsid protein 234 6e-73
gi|530695385|gb|AGT39938.1| major capsid protein 238 6e-72
gi|530695351|gb|AGT39907.1| major capsid protein 234 5e-70
>gi|575096056|emb|CDL66947.1| unnamed protein product [uncultured bacterium]
Length=570
Score = 364 bits (935), Expect = 4e-120, Method: Compositional matrix adjust.
Identities = 168/219 (77%), Positives = 191/219 (87%), Gaps = 1/219 (0%)
Query 1 VTSPDARLQRPEYLGGNRIPIVISEINQTSGT-SANSTPQGNPSGQSRTTDVHSDFKKSF 59
VTSPDARLQR EYLGGNRIPI I+++ Q SGT SA++TPQG G S+TTD HSDF KSF
Sbjct 352 VTSPDARLQRSEYLGGNRIPININQVIQQSGTGSASTTPQGTVVGMSQTTDTHSDFTKSF 411
Query 60 VEHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTD 119
EHGFIIGVM ARYDHTYQQG++R WSRK + DYYWPVF+NIGEQA+ NKEIYAQGN TD
Sbjct 412 TEHGFIIGVMCARYDHTYQQGIDRMWSRKDKFDYYWPVFSNIGEQAIKNKEIYAQGNATD 471
Query 120 DEVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVVN 179
DEVFGYQEAWA+YRYKP+RVTGEMRS QSLDVWHL DDYSKLPSLSD W++ED+ +N
Sbjct 472 DEVFGYQEAWAEYRYKPSRVTGEMRSSYAQSLDVWHLADDYSKLPSLSDEWIREDAKTLN 531
Query 180 RVIAVSEENSNQLWADIFIKNKCTRAMPMYSIPGLIDHH 218
RV+AVS++NSNQ +ADI++KN CTR MPMYSIPGLIDHH
Sbjct 532 RVLAVSDQNSNQFFADIYVKNLCTRPMPMYSIPGLIDHH 570
>gi|575094544|emb|CDL65904.1| unnamed protein product [uncultured bacterium]
Length=551
Score = 351 bits (901), Expect = 3e-115, Method: Compositional matrix adjust.
Identities = 164/217 (76%), Positives = 188/217 (87%), Gaps = 1/217 (0%)
Query 1 VTSPDARLQRPEYLGGNRIPIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSFV 60
VTSPDARLQRPEYLGGNRIPI I+++ Q S T++ S PQGNP GQS TTD ++DF KSFV
Sbjct 335 VTSPDARLQRPEYLGGNRIPININQVLQQSETTSTS-PQGNPVGQSLTTDTNADFVKSFV 393
Query 61 EHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTDD 120
EHGF+IG+MVARYDHTYQQGLERFWSRK R DYYWPVFA+IGEQAVLNKEIY G DD
Sbjct 394 EHGFVIGLMVARYDHTYQQGLERFWSRKDRFDYYWPVFAHIGEQAVLNKEIYTSGTAVDD 453
Query 121 EVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVVNR 180
EVFGYQEA+ADYRYKP+RVTGEMRS APQSLDVWHL DDY+ LPSLSDSW++E ++ V+R
Sbjct 454 EVFGYQEAYADYRYKPSRVTGEMRSAAPQSLDVWHLADDYASLPSLSDSWIRESASTVDR 513
Query 181 VIAVSEENSNQLWADIFIKNKCTRAMPMYSIPGLIDH 217
V+AVS S QL+ DI+I+N+ TR MPMYS+PGLIDH
Sbjct 514 VLAVSSNVSAQLFCDIYIQNRSTRPMPMYSVPGLIDH 550
>gi|575094492|emb|CDL65859.1| unnamed protein product [uncultured bacterium]
Length=551
Score = 341 bits (874), Expect = 3e-111, Method: Compositional matrix adjust.
Identities = 160/218 (73%), Positives = 184/218 (84%), Gaps = 2/218 (1%)
Query 1 VTSPDARLQRPEYLGGNRIPIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSFV 60
VTSPDARLQRPEYLGG+R+PI I+++ Q+S T A TPQGN + S TTD HS+F KSFV
Sbjct 336 VTSPDARLQRPEYLGGSRVPININQVIQSSETGA--TPQGNAAAYSLTTDSHSEFTKSFV 393
Query 61 EHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTDD 120
EHGFIIG+MVARYDH+YQQGL+RFWSRK R DYYWPVFAN+GE AV NKEI+AQG DD
Sbjct 394 EHGFIIGLMVARYDHSYQQGLQRFWSRKDRFDYYWPVFANLGEMAVKNKEIFAQGTDVDD 453
Query 121 EVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVVNR 180
EVFGYQEAWADYRYKP+ VTGEMRSQ QSLD+WHL DDY LPSLSDSW++EDS+ VNR
Sbjct 454 EVFGYQEAWADYRYKPSVVTGEMRSQYAQSLDIWHLADDYENLPSLSDSWIREDSSTVNR 513
Query 181 VIAVSEENSNQLWADIFIKNKCTRAMPMYSIPGLIDHH 218
V+AVS+ S QL+ DI+I+ TR MP+YSIPGLIDHH
Sbjct 514 VLAVSDSVSAQLFCDIYIRCLATRPMPLYSIPGLIDHH 551
>gi|575094572|emb|CDL65928.1| unnamed protein product [uncultured bacterium]
Length=556
Score = 334 bits (857), Expect = 1e-108, Method: Compositional matrix adjust.
Identities = 160/218 (73%), Positives = 183/218 (84%), Gaps = 1/218 (0%)
Query 1 VTSPDARLQRPEYLGGNRIPIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSFV 60
V SPD+RLQRPEYLGGNRIPI +++I Q S ++ S P G +G S TTD +SDF KSFV
Sbjct 340 VVSPDSRLQRPEYLGGNRIPINVNQIIQQSQSTEQS-PLGALAGMSVTTDKNSDFIKSFV 398
Query 61 EHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTDD 120
EHG+IIG++VARYDHTYQQGL+R WSRK R D+YWPV ANIGEQAVLNKEIY G+ TDD
Sbjct 399 EHGYIIGLVVARYDHTYQQGLDRMWSRKDRFDFYWPVLANIGEQAVLNKEIYIDGSDTDD 458
Query 121 EVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVVNR 180
EVFGYQEAWA+YRYKPNRV GEMRS APQSLDVWHLGDDYS LP LSDSW++ED V+R
Sbjct 459 EVFGYQEAWAEYRYKPNRVCGEMRSSAPQSLDVWHLGDDYSSLPYLSDSWIREDKTNVDR 518
Query 181 VIAVSEENSNQLWADIFIKNKCTRAMPMYSIPGLIDHH 218
V+AV+ S+QL+ADI+I NK TR MPMYSIPGLIDHH
Sbjct 519 VLAVTSSVSDQLFADIYICNKATRPMPMYSIPGLIDHH 556
>gi|575094496|emb|CDL65862.1| unnamed protein product [uncultured bacterium]
Length=568
Score = 315 bits (806), Expect = 8e-101, Method: Compositional matrix adjust.
Identities = 148/218 (68%), Positives = 173/218 (79%), Gaps = 1/218 (0%)
Query 1 VTSPDARLQRPEYLGGNRIPIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSFV 60
VT DAR+Q PEYLGGNRIPI I+++ QTS TS + +PQGN +GQS T+D H DF KSF
Sbjct 352 VTPLDARMQVPEYLGGNRIPININQVVQTSQTS-DVSPQGNVAGQSLTSDSHGDFIKSFT 410
Query 61 EHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTDD 120
EHG +IGV VARYDHTYQQG+ + WSRK R DYYWPV ANIGEQAVLNKEIYAQG D+
Sbjct 411 EHGMLIGVAVARYDHTYQQGVSKLWSRKTRFDYYWPVLANIGEQAVLNKEIYAQGTAQDE 470
Query 121 EVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVVNR 180
EVFGYQEAWA+YRYKP+ VTGEMRS A SLD WH DDY+ LP LS W++ED ++R
Sbjct 471 EVFGYQEAWAEYRYKPSIVTGEMRSSARTSLDSWHFADDYNSLPKLSADWIKEDKTNIDR 530
Query 181 VIAVSEENSNQLWADIFIKNKCTRAMPMYSIPGLIDHH 218
V+AVS SNQ +AD +I+N+ TRA+P YSIPGLIDHH
Sbjct 531 VLAVSSSVSNQYFADFYIENETTRALPFYSIPGLIDHH 568
>gi|575094431|emb|CDL65804.1| unnamed protein product [uncultured bacterium]
Length=560
Score = 264 bits (674), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 129/218 (59%), Positives = 154/218 (71%), Gaps = 3/218 (1%)
Query 1 VTSPDARLQRPEYLGGNRIPIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSFV 60
VT+ DAR+Q PEYLGG ++PI +S++ QTS S +++PQGN + S T S F KSF
Sbjct 346 VTTSDARMQIPEYLGGCKVPINVSQVVQTSA-STDASPQGNTAAISVTPFSKSMFTKSFD 404
Query 61 EHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTDD 120
EHGFIIGV AR +YQQG+ER WSRK RLDYY+PV ANIGEQA+LNKEIYAQGN DD
Sbjct 405 EHGFIIGVATARTAQSYQQGIERMWSRKDRLDYYFPVLANIGEQAILNKEIYAQGNAKDD 464
Query 121 EVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVVNR 180
E FGYQEAWADYRYKPN + G RS A QSLD WH G DY KLP+LS W+++ + R
Sbjct 465 EAFGYQEAWADYRYKPNTICGRFRSNAQQSLDAWHYGQDYDKLPTLSTDWMEQSDIEMKR 524
Query 181 VIAVSEENSNQLWADIFIKNKCTRAMPMYSIPGLIDHH 218
+AV E A+ K R MP+YSIPGLIDH+
Sbjct 525 TLAVQTE--PDFIANFRFNCKTVRVMPLYSIPGLIDHN 560
>gi|575094415|emb|CDL65790.1| unnamed protein product [uncultured bacterium]
Length=569
Score = 251 bits (640), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 117/214 (55%), Positives = 150/214 (70%), Gaps = 1/214 (0%)
Query 1 VTSPDARLQRPEYLGGNRIPIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSFV 60
V+SPDARLQR EY+GG RIPI +S++ Q+S + S PQGN + S TT ++ S V
Sbjct 354 VSSPDARLQRSEYIGGERIPINVSQVIQSSASDTTS-PQGNAAAYSLTTSANTIRAYSAV 412
Query 61 EHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTDD 120
EHG+I+G+ R DH+YQQGL R W+R R YY P+ AN+GEQAVLN+EIYAQG D
Sbjct 413 EHGYILGLAAIRVDHSYQQGLSRMWTRSDRFSYYHPMLANLGEQAVLNQEIYAQGTTADT 472
Query 121 EVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVVNR 180
EVFGYQEAWADYRY+ N +TGEMRS QSLD WH GD Y+ LP LS+ W++E ++R
Sbjct 473 EVFGYQEAWADYRYRTNMITGEMRSTYAQSLDAWHYGDKYTDLPRLSNDWIKEGQENIDR 532
Query 181 VIAVSEENSNQLWADIFIKNKCTRAMPMYSIPGL 214
+AV ENS+Q +++ R MP+YS+PGL
Sbjct 533 TLAVQSENSHQFICNLYFDQTWVRPMPIYSVPGL 566
>gi|444297919|dbj|GAC77754.1| major capsid protein [uncultured marine virus]
Length=283
Score = 234 bits (597), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 115/217 (53%), Positives = 147/217 (68%), Gaps = 3/217 (1%)
Query 1 VTSPDARLQRPEYLGGNRIPIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSFV 60
V SPD+RLQRPEYLGG + I I QTS + A T QG + + F KSFV
Sbjct 69 VESPDSRLQRPEYLGGGSSLVQILPIAQTSQSEATGTEQGKLTAVGYHSQSGLGFTKSFV 128
Query 61 EHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTDD 120
EH IIG++ R D TYQQG++R WSRK + D+YWP AN+GEQ VLNKEI+ Q DD
Sbjct 129 EHCVIIGLVNVRADLTYQQGMDRMWSRKTKYDFYWPALANLGEQTVLNKEIFTQAIAADD 188
Query 121 EVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVVNR 180
EVFGYQE WA+YRY P+R+TG +RS A SLD+WHL D+ LP+L++S++QE+ V+R
Sbjct 189 EVFGYQERWAEYRYFPSRITGVLRSDAAASLDLWHLSQDFGSLPALNESFIQENPP-VDR 247
Query 181 VIAVSEENSNQLWADIFIKNKCTRAMPMYSIPGLIDH 217
V+AV++E + D + TR MPMYS+PGLIDH
Sbjct 248 VVAVTDE--PEFIFDSYFDLITTRPMPMYSVPGLIDH 282
>gi|530695385|gb|AGT39938.1| major capsid protein [Marine gokushovirus]
Length=514
Score = 238 bits (608), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 121/217 (56%), Positives = 150/217 (69%), Gaps = 4/217 (2%)
Query 1 VTSPDARLQRPEYLGGNRIPIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSFV 60
VTSPDARLQRPEYLGG + I I+ I QTS T A +TPQGN SG T F KSF
Sbjct 301 VTSPDARLQRPEYLGGGKDRININPIAQTSSTDA-TTPQGNLSGYGTTGFTGHRFNKSFT 359
Query 61 EHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTDD 120
EH ++G+ D TYQQGL R +SR+ R D+YWP A++GEQAVLNKEIYAQG D+
Sbjct 360 EHSVVLGLACVFADLTYQQGLPRHFSRQTRWDFYWPALAHLGEQAVLNKEIYAQGTTDDN 419
Query 121 EVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVVNR 180
VFGYQE +A+YRYKP+ +TG+MRS QSLD+WHL D+ LP L+ S+++E+ V+R
Sbjct 420 NVFGYQERYAEYRYKPSSITGQMRSNFAQSLDIWHLAQDFGSLPVLNSSFIEENPP-VDR 478
Query 181 VIAVSEENSNQLWADIFIKNKCTRAMPMYSIPGLIDH 217
V AV +N L D++ K KC R MP Y +PGLIDH
Sbjct 479 VTAV--QNYPNLILDMYFKLKCARPMPTYGVPGLIDH 513
>gi|530695351|gb|AGT39907.1| major capsid protein [Marine gokushovirus]
Length=539
Score = 234 bits (597), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 112/220 (51%), Positives = 146/220 (66%), Gaps = 4/220 (2%)
Query 1 VTSPDARLQRPEYLGGNRIPIVISEINQ--TSGTSANSTPQGNPSGQSRTTDVHSDFKKS 58
V SPDAR+QRPEYLGG PI+++ + Q SG S TP G F S
Sbjct 320 VISPDARMQRPEYLGGGSAPIIVNPVAQQSASGASGTDTPLGTLGAVGTGLASGHGFASS 379
Query 59 FVEHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGT 118
F EHG ++G+ R D TYQQGL R +SR R D+++PVF+++GEQ +LNKE+YA G T
Sbjct 380 FTEHGVVVGLCSVRADLTYQQGLHRMFSRSTRYDFFFPVFSHLGEQPILNKELYATGTST 439
Query 119 DDEVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVV 178
DD+VFGYQEAWA+YRYKP++VTG MRS A +LD WHL ++ LP+L+ +++ ED+ V
Sbjct 440 DDDVFGYQEAWAEYRYKPSQVTGLMRSTAAGTLDAWHLAQNFGSLPTLNSTFI-EDTPPV 498
Query 179 NRVIAV-SEENSNQLWADIFIKNKCTRAMPMYSIPGLIDH 217
+RV+AV SE N Q D F R MPMYS+PGL+DH
Sbjct 499 DRVVAVGSEANGQQFIFDAFFDINMARPMPMYSVPGLVDH 538
Lambda K H a alpha
0.316 0.133 0.408 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 805881880428