bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-31_CDS_annotation_glimmer3.pl_2_1
Length=166
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094565|emb|CDL65922.1| unnamed protein product 292 4e-98
gi|530695387|gb|AGT39940.1| portal protein 74.3 1e-13
gi|655438321|ref|WP_028823072.1| hypothetical protein 63.2 1e-09
gi|12085142|ref|NP_073544.1| minor capsid protein 62.4 2e-09
gi|313766928|gb|ADR80654.1| putative minor capsid protein 61.2 4e-09
gi|530695375|gb|AGT39929.1| portal protein 57.4 1e-07
gi|575096092|emb|CDL66972.1| unnamed protein product 51.2 1e-05
gi|47566145|ref|YP_022483.1| structural protein 50.8 2e-05
gi|530695365|gb|AGT39920.1| portal protein 50.4 2e-05
gi|77020118|ref|YP_338242.1| putative capsid protein 50.4 2e-05
>gi|575094565|emb|CDL65922.1| unnamed protein product [uncultured bacterium]
Length=166
Score = 292 bits (747), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 140/166 (84%), Positives = 154/166 (93%), Gaps = 0/166 (0%)
Query 1 MPKFFTKYNPPEVLGFSSDLPSKVQEQFADACQTDTIIRKYNMMGVNPFIASGGSQYLDT 60
MPKFFTKYNPP++ GFSS++ SKVQEQFADACQTDTIIRKYNMMGVNPFIA+GGSQYLDT
Sbjct 1 MPKFFTKYNPPKIPGFSSEMESKVQEQFADACQTDTIIRKYNMMGVNPFIAAGGSQYLDT 60
Query 61 TQIPDFICASNAQVKVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRNTDYLRDIGVLAPL 120
TQIP F+ A NAQ+KVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRN +YLR+IGVLAPL
Sbjct 61 TQIPSFVAAQNAQIKVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRNAEYLREIGVLAPL 120
Query 121 PAEQEGEKHSAQSGDNSKKAPQPSEGSDLFAGKEPEKAVSPEKSNG 166
PAE+EG+K S+Q GD S+KAPQ S+GSDLFAGKEPEKA S EKSNG
Sbjct 121 PAEKEGDKPSSQQGDISEKAPQSSQGSDLFAGKEPEKAFSLEKSNG 166
>gi|530695387|gb|AGT39940.1| portal protein [Marine gokushovirus]
Length=164
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/114 (32%), Positives = 66/114 (58%), Gaps = 0/114 (0%)
Query 4 FFTKYNPPEVLGFSSDLPSKVQEQFADACQTDTIIRKYNMMGVNPFIASGGSQYLDTTQI 63
F Y+P + F+++ S Q+ F D C+ II+K++ G+ + G ++Y D +Q+
Sbjct 14 FRKAYDPHKKYIFNTEGESLTQQHFKDECEVINIIKKHDRNGIIEHVQRGQARYGDFSQV 73
Query 64 PDFICASNAQVKVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRNTDYLRDIGVL 117
D+ A + ++ F +P+DIR +F+NDP +F E VS+P N + L+ +G +
Sbjct 74 ADYREALDLVRDAQQEFMSVPSDIRKKFDNDPGKFYEFVSNPDNKEELKQMGFI 127
>gi|655438321|ref|WP_028823072.1| hypothetical protein [Proteobacteria bacterium JGI 0000113-P07]
Length=149
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 61/114 (54%), Gaps = 0/114 (0%)
Query 4 FFTKYNPPEVLGFSSDLPSKVQEQFADACQTDTIIRKYNMMGVNPFIASGGSQYLDTTQI 63
F T Y F++ S Q+ F + C II++++ G+ + G ++Y D +++
Sbjct 9 FRTAYEQHAPCYFNTTGESLTQQHFQEECDIINIIKRHDRNGIIEHVHRGQARYGDFSEV 68
Query 64 PDFICASNAQVKVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRNTDYLRDIGVL 117
D+ A + + E F +P+DIR +FNN+P +F VS+P N + ++ +G +
Sbjct 69 HDYREALDLVQEANEEFMKIPSDIRKQFNNNPGEFLNFVSNPDNEEEIQKMGFV 122
>gi|12085142|ref|NP_073544.1| minor capsid protein [Bdellovibrio phage phiMH2K]
gi|75089167|sp|Q9G053.1|B_BPPHM RecName: Full=Internal scaffolding protein VP3 [Bdellovibrio
phage phiMH2K]
gi|12017990|gb|AAG45346.1|AF306496_7 Vp3 [Bdellovibrio phage phiMH2K]
Length=151
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/146 (25%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Query 1 MPKFFTKYNPPEVLGFSSDLPSKVQEQFADACQTDTIIRKYNMMGVNPFIASGGSQYLDT 60
M K + N +++ ++LP + + F C + I++K+ G +A Y D
Sbjct 1 MKKIELRPNGTKLVHTVNELPPETDQSFGKECDINFIVKKFIKTGQITHLARRQGFYGDQ 60
Query 61 TQIPDFICASNAQVKVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRNTDYLRDIGVLAPL 120
+ IPDF A + K ++ F+ LPA +R F N P + + + DP+N D +G++ +
Sbjct 61 SSIPDFQTAMDTVTKAQQAFDELPAHMRKRFANSPHELMQFLQDPKNRDEAISLGLMEMV 120
Query 121 PAEQEGEKHSAQSGDNSKKAPQPSEG 146
Q+ + + + + P P+ G
Sbjct 121 ETPQQAPQSTT---NQTTTKPAPASG 143
>gi|313766928|gb|ADR80654.1| putative minor capsid protein [Uncultured Microviridae]
Length=145
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/114 (30%), Positives = 59/114 (52%), Gaps = 0/114 (0%)
Query 3 KFFTKYNPPEVLGFSSDLPSKVQEQFADACQTDTIIRKYNMMGVNPFIASGGSQYLDTTQ 62
KF T Y +GF + S Q+ A A II++Y+ G+ + G +QY D ++
Sbjct 6 KFRTPYGDRTRVGFETTGESLTQQSHAAAADVRNIIKQYDKTGLIANVNKGIAQYGDYSE 65
Query 63 IPDFICASNAQVKVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRNTDYLRDIGV 116
I ++ A N + E F +P+ IR +FNN+ F E ++P+N + + +G+
Sbjct 66 INEYAEALNMVREANEAFAEIPSHIREQFNNNAGLFFEFATNPKNKEEMIKMGL 119
>gi|530695375|gb|AGT39929.1| portal protein [Marine gokushovirus]
Length=165
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (47%), Gaps = 11/137 (8%)
Query 1 MPKFFTKYNPPEVLGFSSDLP---------SKVQEQFADACQTDTIIRKYNMMGVNPFIA 51
M +F + Y+P + +P S +++FA + + I+ +Y G+ +
Sbjct 17 MIEFRSAYSPRLRVALDQSIPDPKTGEIQVSMTKQEFAQETEINNIMARYEKTGILDHVK 76
Query 52 SGGSQYLDTTQIPDFICASNAQVKVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRNTDYL 111
Y + D+ A + + F+ LPA R EF+NDP++F + DP N D +
Sbjct 77 EHAG-YANFPAPVDYQDALQMTIDAQLAFDALPARTRREFHNDPLEFLSFIEDPDNVDRM 135
Query 112 RDIGVLAPLPAEQEGEK 128
RD+G+L P E+ E+
Sbjct 136 RDLGLLND-PVEEASEE 151
>gi|575096092|emb|CDL66972.1| unnamed protein product [uncultured bacterium]
Length=145
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/132 (30%), Positives = 59/132 (45%), Gaps = 12/132 (9%)
Query 3 KFFTKY-NPPEVLGFSSDLPSKVQEQFADACQTDTIIRKYNMMGVNPFIASGGS------ 55
KF+T + + PE S + F D C II + G+ +AS G+
Sbjct 2 KFYTLFGDKPERQDVLFTEESVTDDSFVDECDIHHIIGSFGQTGM---VASPGAKDPELL 58
Query 56 QYLDTTQIPDFICASNAQVKVKEYFEGLPADIRLEFNNDPMQFAEVVS--DPRNTDYLRD 113
QY D T PD+ A N ++V+E F LP+ +R EF N+P + + D + L
Sbjct 59 QYGDATLFPDYQTAKNLTIQVEEEFLSLPSSVRAEFGNNPEELLRALGSQDDKIIAKLEK 118
Query 114 IGVLAPLPAEQE 125
+G+ P QE
Sbjct 119 LGLKEPSKPTQE 130
>gi|47566145|ref|YP_022483.1| structural protein [Chlamydia phage 3]
gi|47522480|emb|CAD79481.1| structural protein [Chlamydia phage 3]
Length=148
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (45%), Gaps = 0/114 (0%)
Query 4 FFTKYNPPEVLGFSSDLPSKVQEQFADACQTDTIIRKYNMMGVNPFIASGGSQYLDTTQI 63
F + Y+ + + S Q+ D C + I+ K N GV + +Y+D
Sbjct 2 FKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVLEHVERRSPRYMDCMDP 61
Query 64 PDFICASNAQVKVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRNTDYLRDIGVL 117
++ A N ++ +E F+ LPA IR F NDP + +S N + + +G +
Sbjct 62 MEYSEALNVVIEAQEQFDSLPAKIRERFGNDPEAMLDFLSREENYEEAKALGFV 115
>gi|530695365|gb|AGT39920.1| portal protein [Marine gokushovirus]
Length=146
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (1%)
Query 4 FFTKYNPPEVLGFSSDLPSKVQEQFADACQTDTIIRKYNMMGVNPFIASGGSQYLDTTQI 63
F T Y E + S S Q+ FA II++Y+ G+ + G ++Y D +++
Sbjct 6 FKTGYGERERVQTKSVGESLTQQHFAHEADVRNIIKQYDKTGLIANVQKGVARYGDYSEV 65
Query 64 PDFICASNAQVKVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRNTDYLRDIGVLAPLPAE 123
++ A + + F LPA++R F N+ F E ++P+N + + ++G L P +
Sbjct 66 NEYREALDLVNEANATFAELPAELREMFQNNAGTFLEFATNPQNENKMIELG-LKEAPVQ 124
Query 124 QE 125
+E
Sbjct 125 EE 126
>gi|77020118|ref|YP_338242.1| putative capsid protein [Chlamydia phage 4]
gi|59940017|gb|AAX12546.1| putative capsid protein [Chlamydia phage 4]
Length=148
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (45%), Gaps = 0/114 (0%)
Query 4 FFTKYNPPEVLGFSSDLPSKVQEQFADACQTDTIIRKYNMMGVNPFIASGGSQYLDTTQI 63
F + Y+ + + S Q+ D C + I+ K N GV + +Y+D
Sbjct 2 FKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVLEHVERRSPRYMDCMDP 61
Query 64 PDFICASNAQVKVKEYFEGLPADIRLEFNNDPMQFAEVVSDPRNTDYLRDIGVL 117
++ A N ++ +E F+ LPA IR F NDP + +S N + + +G +
Sbjct 62 MEYSEALNVVIEAQEQFDSLPAKIRERFGNDPEAMLDFLSREENYEEAKALGFV 115
Lambda K H a alpha
0.312 0.131 0.380 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 429014905530