bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-34_CDS_annotation_glimmer3.pl_2_1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094544|emb|CDL65904.1| unnamed protein product 169 5e-47
gi|575094572|emb|CDL65928.1| unnamed protein product 158 3e-43
gi|575096056|emb|CDL66947.1| unnamed protein product 154 1e-41
gi|575094496|emb|CDL65862.1| unnamed protein product 147 3e-39
gi|575094492|emb|CDL65859.1| unnamed protein product 142 3e-37
gi|575094415|emb|CDL65790.1| unnamed protein product 128 3e-32
gi|575094431|emb|CDL65804.1| unnamed protein product 125 2e-31
gi|444297901|dbj|GAC77763.1| major capsid protein 124 2e-31
gi|575094564|emb|CDL65921.1| unnamed protein product 125 3e-31
gi|444297903|dbj|GAC77762.1| major capsid protein 124 3e-31
>gi|575094544|emb|CDL65904.1| unnamed protein product [uncultured bacterium]
Length=551
Score = 169 bits (427), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 91/112 (81%), Gaps = 0/112 (0%)
Query 1 VESHFAQLPAAEIQRSTFDRSHGYKTSFCAGDIIPFMVDEVLPGDSFNISTSKVVRSQTM 60
VESHF++LP+ +I RS FDRS KT+F GD+IPF +DEVLPGD+FN+ +SKV+R Q++
Sbjct 5 VESHFSRLPSVDISRSQFDRSSSLKTTFNVGDLIPFYIDEVLPGDTFNVKSSKVIRMQSL 64
Query 61 LTPIMDNMFLDTYYFFVPNRLVWKHWREFCGENREGAWAPTVEYTVPSIAPP 112
+TPIMDN++LDTYYFFVPNRLVW HW++F GEN E AW PT EY VP + P
Sbjct 65 VTPIMDNIYLDTYYFFVPNRLVWSHWQQFNGENTESAWLPTTEYQVPQVTAP 116
>gi|575094572|emb|CDL65928.1| unnamed protein product [uncultured bacterium]
Length=556
Score = 158 bits (400), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 71/113 (63%), Positives = 89/113 (79%), Gaps = 1/113 (1%)
Query 1 VESHFAQLPA-AEIQRSTFDRSHGYKTSFCAGDIIPFMVDEVLPGDSFNISTSKVVRSQT 59
VESHFA+ P +I RSTFDRS K +F G+IIPF ++EVLPGD+F + TSKV+R QT
Sbjct 5 VESHFAKNPTNIDISRSTFDRSSSVKLTFNTGEIIPFFIEEVLPGDTFKVKTSKVIRLQT 64
Query 60 MLTPIMDNMFLDTYYFFVPNRLVWKHWREFCGENREGAWAPTVEYTVPSIAPP 112
+LTP+MDN++LDTYYFFVPNRLVW+HW+EF GEN + AW P VEY +P + P
Sbjct 65 LLTPMMDNIYLDTYYFFVPNRLVWEHWKEFNGENTQSAWIPEVEYQIPQLTAP 117
>gi|575096056|emb|CDL66947.1| unnamed protein product [uncultured bacterium]
Length=570
Score = 154 bits (388), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 72/115 (63%), Positives = 91/115 (79%), Gaps = 0/115 (0%)
Query 2 ESHFAQLPAAEIQRSTFDRSHGYKTSFCAGDIIPFMVDEVLPGDSFNISTSKVVRSQTML 61
ESHF+ LP +I RS FDRS KT+F AGD++PF ++EVLPGD+F++ +SKVVR QT+L
Sbjct 7 ESHFSLLPHVDISRSRFDRSSSIKTTFNAGDVVPFFLEEVLPGDTFSVDSSKVVRMQTLL 66
Query 62 TPIMDNMFLDTYYFFVPNRLVWKHWREFCGENREGAWAPTVEYTVPSIAPPPWRF 116
TP+MDN++LDTYYFFVPNRLVW+HW+EFCGEN E AW P EY +P + P F
Sbjct 67 TPMMDNVYLDTYYFFVPNRLVWQHWKEFCGENNESAWIPQTEYAIPQLKSPVGGF 121
>gi|575094496|emb|CDL65862.1| unnamed protein product [uncultured bacterium]
Length=568
Score = 147 bits (371), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 66/112 (59%), Positives = 84/112 (75%), Gaps = 1/112 (1%)
Query 2 ESHFAQLPAA-EIQRSTFDRSHGYKTSFCAGDIIPFMVDEVLPGDSFNISTSKVVRSQTM 60
S F++ P +IQRSTF+RS YKTS G++IPF DEVLPGD+F + T+KVVR Q +
Sbjct 5 NSRFSENPVTLDIQRSTFNRSSTYKTSANIGELIPFYYDEVLPGDTFQVKTNKVVRLQPL 64
Query 61 LTPIMDNMFLDTYYFFVPNRLVWKHWREFCGENREGAWAPTVEYTVPSIAPP 112
++ MDN++ DTYYFFVPNRLVW+HW EF GEN++GAW P EYT+P I P
Sbjct 65 VSAPMDNLYFDTYYFFVPNRLVWEHWEEFMGENKQGAWIPQTEYTIPQITSP 116
>gi|575094492|emb|CDL65859.1| unnamed protein product [uncultured bacterium]
Length=551
Score = 142 bits (357), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 73/89 (82%), Gaps = 0/89 (0%)
Query 24 YKTSFCAGDIIPFMVDEVLPGDSFNISTSKVVRSQTMLTPIMDNMFLDTYYFFVPNRLVW 83
YKT+F GD+IPF VDE+LPGD+F+I TSKVVR Q++LTP+MDN++LDTY+FFVPNRL W
Sbjct 29 YKTTFNVGDLIPFYVDEILPGDTFSIDTSKVVRMQSLLTPVMDNIYLDTYFFFVPNRLTW 88
Query 84 KHWREFCGENREGAWAPTVEYTVPSIAPP 112
HWRE GEN + AW P VEY+VP I P
Sbjct 89 SHWRELMGENTQSAWTPQVEYSVPQITAP 117
>gi|575094415|emb|CDL65790.1| unnamed protein product [uncultured bacterium]
Length=569
Score = 128 bits (321), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 73/112 (65%), Gaps = 0/112 (0%)
Query 1 VESHFAQLPAAEIQRSTFDRSHGYKTSFCAGDIIPFMVDEVLPGDSFNISTSKVVRSQTM 60
E+H++Q+P A IQR+ F R Y T+ GD++P VDEVLPGD+ I +VR T
Sbjct 5 AEAHYSQIPHANIQRAKFKRDFSYLTTINEGDLVPIYVDEVLPGDTIKIKQRSLVRMSTP 64
Query 61 LTPIMDNMFLDTYYFFVPNRLVWKHWREFCGENREGAWAPTVEYTVPSIAPP 112
L P+MDN +LD +YFFVP RLVW HW+ GEN + WAP V+YT P + P
Sbjct 65 LYPVMDNCYLDIWYFFVPCRLVWDHWQNLMGENTKSYWAPDVQYTTPLTSAP 116
>gi|575094431|emb|CDL65804.1| unnamed protein product [uncultured bacterium]
Length=560
Score = 125 bits (315), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 53/109 (49%), Positives = 73/109 (67%), Gaps = 0/109 (0%)
Query 4 HFAQLPAAEIQRSTFDRSHGYKTSFCAGDIIPFMVDEVLPGDSFNISTSKVVRSQTMLTP 63
+FA+ P + RS F+R+ +F G+I+P VDEVLPGD+F + + ++R T + P
Sbjct 8 NFARNPGVSLSRSRFNRTSDRLDTFDTGEIVPIYVDEVLPGDTFELDMTAIIRGSTPIFP 67
Query 64 IMDNMFLDTYYFFVPNRLVWKHWREFCGENREGAWAPTVEYTVPSIAPP 112
+MDN FLD Y+FFVPNRL W+HWRE GENR AW V+Y+VP + P
Sbjct 68 VMDNSFLDVYFFFVPNRLTWEHWRELMGENRTTAWTQPVDYSVPQVTAP 116
>gi|444297901|dbj|GAC77763.1| major capsid protein, partial [uncultured marine virus]
Length=443
Score = 124 bits (312), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 80/109 (73%), Gaps = 1/109 (1%)
Query 1 VESHFAQLPAAEIQRSTFDRSHGYKTSFCAGDIIPFMVDEVLPGDSFNISTSKVVRSQTM 60
++ F+ +P A+IQRS F+RSHGYKT+F +G +IPF VDE LPGD+FN+ S V R T
Sbjct 12 MKHDFSSVPHADIQRSRFNRSHGYKTTFDSGLLIPFFVDEALPGDTFNLKVSSVARLATP 71
Query 61 LTPIMDNMFLDTYYFFVPNRLVWKHWREFCGENREGAWAPTVEYTVPSI 109
L P MDN+F+D ++FFVPNRL+W +W+ F GE R+ + ++TVP+I
Sbjct 72 LLPFMDNLFIDFHFFFVPNRLIWNNWQRFMGE-RDPDPDSSTDFTVPTI 119
>gi|575094564|emb|CDL65921.1| unnamed protein product [uncultured bacterium]
Length=582
Score = 125 bits (314), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 54/109 (50%), Positives = 79/109 (72%), Gaps = 2/109 (2%)
Query 2 ESHFAQLPAAEIQRSTFDRSHGYKTSFCAGDIIPFMVDEVLPGDSFNISTSKVVRSQTML 61
+ F+Q+P + IQRS FDRSH YKT+ AG +IPF VDEVLPGD+F + + VR T++
Sbjct 12 NNRFSQIPNSPIQRSVFDRSHDYKTTLDAGYLIPFFVDEVLPGDTFKLRVNAFVRMNTLV 71
Query 62 TPIMDNMFLDTYYFFVPNRLVWKHWREFCGENREGAWAPTVEYTVPSIA 110
P MDN+F+DT++FFVP+RLVW +W+ FCGE + + ++ +PS++
Sbjct 72 APFMDNVFMDTFFFFVPSRLVWDNWQRFCGEQKNP--GDSTDFLIPSLS 118
>gi|444297903|dbj|GAC77762.1| major capsid protein, partial [uncultured marine virus]
Length=461
Score = 124 bits (311), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 80/109 (73%), Gaps = 1/109 (1%)
Query 1 VESHFAQLPAAEIQRSTFDRSHGYKTSFCAGDIIPFMVDEVLPGDSFNISTSKVVRSQTM 60
++ F+ +P A+IQRS F+RSHGYKT+F +G +IPF VDE LPGD+FN+ S V R T
Sbjct 12 MKHDFSSVPHADIQRSRFNRSHGYKTTFDSGLLIPFFVDEALPGDTFNLKVSSVARLATP 71
Query 61 LTPIMDNMFLDTYYFFVPNRLVWKHWREFCGENREGAWAPTVEYTVPSI 109
L P MDN+F+D ++FFVPNRL+W +W+ F GE R+ + ++TVP+I
Sbjct 72 LLPFMDNLFIDFHFFFVPNRLIWNNWQRFMGE-RDPDPDSSTDFTVPTI 119
Lambda K H a alpha
0.324 0.138 0.463 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 428715139008