bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-35_CDS_annotation_glimmer3.pl_2_3
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094436|emb|CDL65809.1| unnamed protein product 201 5e-59
gi|575094418|emb|CDL65793.1| unnamed protein product 135 9e-34
gi|575094494|emb|CDL65868.1| unnamed protein product 131 1e-32
gi|575094569|emb|CDL65925.1| unnamed protein product 129 1e-31
gi|575096096|emb|CDL66976.1| unnamed protein product 119 2e-28
gi|530695371|gb|AGT39925.1| replication initiator 109 9e-25
gi|17402855|ref|NP_510879.1| hypothetical protein PhiCPG1p9 107 4e-24
gi|313766924|gb|ADR80651.1| putative replication initiation protein 107 7e-24
gi|47566147|ref|YP_022485.1| nonstructural protein 106 1e-23
gi|530695350|gb|AGT39906.1| replication initiator 106 1e-23
>gi|575094436|emb|CDL65809.1| unnamed protein product [uncultured bacterium]
Length=340
Score = 201 bits (511), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 118/248 (48%), Positives = 152/248 (61%), Gaps = 16/248 (6%)
Query 1 MILNTGEIMRKVQYVWKPGKKTPESVQTLLYTDVQKFLKRLRKAYKSR------LRFFCA 54
+I NTGE++ +W G PE + TL DV KF KRLRK + LR+F A
Sbjct 95 LIRNTGELIEGGVSMWSRGADVPEQINTLNMDDVTKFWKRLRKYQTTEPDMGKELRYFYA 154
Query 55 GEYGEQTARPHYHMILYGWEPTDLKQLYKIHHNGYYTSEWLEKLWGNGQIQIAQAVPETY 114
GEYGEQT RPHYH I++G E DLK++ N YY S LEK+WG G + IA + P TY
Sbjct 155 GEYGEQTGRPHYHAIIFGLEIPDLKKV--PGRNQYYKSAILEKIWGKGNVTIAYSEPGTY 212
Query 115 RYVAGYVTKKMYEIDGKKANAYYELGQQKPFACMSLKPGLGDAYYQEHKEEIWKQGYIQC 174
YVAGYVTKKMY D K+ Y LG P+ACMS KPG+G + +++ +++W+Q YIQ
Sbjct 213 NYVAGYVTKKMYGNDTKE---YQNLGLTAPYACMSRKPGIGMPWLEQNLDKLWEQDYIQL 269
Query 175 TNGKQAQIPRYYEKMMEKENPERLWRIKQNRQRKAIEQKRLQFEGKDYKT---QLETKER 231
GK A IPR ++KM+E +PERLW+ KQ RQ+ AI LQ + +T Q ETK+R
Sbjct 270 A-GKTAPIPRAFDKMLEATDPERLWKKKQARQKSAINGA-LQAMSQTDQTLLEQYETKDR 327
Query 232 VTKKQTKK 239
V K K
Sbjct 328 VLMKSFAK 335
>gi|575094418|emb|CDL65793.1| unnamed protein product [uncultured bacterium]
Length=367
Score = 135 bits (340), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 115/199 (58%), Gaps = 10/199 (5%)
Query 2 ILN--TGEIMRKVQYVWKPGKKTPESVQTLLYTDVQKFLKRLRKAYK-----SRLRFFCA 54
+LN TGEI R V+ + T+ DVQKF+KRLRKA + + ++ +
Sbjct 88 VLNKETGEIYRGVRNPAEYVAGVTLERMTVYKPDVQKFIKRLRKAAEKEGLTDHIMYYLS 147
Query 55 GEYGEQTARPHYHMILYGWEPTDLKQLYKIHHNGYYTSEWLEKLWGNGQIQIAQAVPETY 114
GEYG++T RPHYH+I+YG E D + + +TSEWL+ +WG G I+I E+
Sbjct 148 GEYGDKTGRPHYHLIVYGLEVPDAEHIGSRRGYDRFTSEWLKGIWGMGLIEIGSVTYESC 207
Query 115 RYVAGYVTKKMYEIDGKKANAYYELGQQKPFACMSLKPGLGDAYYQEHKEEIWKQGYIQC 174
+YVA YV KK GK+A Y + G F MSLKP +G Y++EHK+EI+ I
Sbjct 208 QYVARYVIKKR---KGKEAKEYKDAGIMPEFVQMSLKPAIGQRYWEEHKDEIYSLDQINL 264
Query 175 TNGKQAQIPRYYEKMMEKE 193
+G+ + PRY++K+ ++E
Sbjct 265 ASGRTVKPPRYFDKLEDQE 283
>gi|575094494|emb|CDL65868.1| unnamed protein product [uncultured bacterium]
Length=348
Score = 131 bits (330), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 15/180 (8%)
Query 28 TLLYTDVQKFLKRLRKAYK------SRLRFFCAGEYGEQTARPHYHMILYGWEPTDLKQL 81
TL+ D+Q F+KRLR+ + +++FCAGEYG QT RPHYHMILYG+ DLK L
Sbjct 122 TLVKKDIQDFIKRLRRFCEYNIDDNLHIKYFCAGEYGSQTFRPHYHMILYGFPINDLK-L 180
Query 82 YKIHHNG--YYTSEWLEKLWGNGQIQIAQAVPETYRYVAGYVTKKMYEIDGKKANAYYEL 139
YK+ +G YY S ++KLW G + I + +T Y A Y+ KK Y G A Y +
Sbjct 181 YKMSLDGYNYYNSATIDKLWKKGFVVIGEVTWDTCAYTARYILKKQY---GSGAQIYKDY 237
Query 140 GQQKPFACMSLKPGLGDAYYQEHKEEIWKQGYIQC-TNGKQAQI--PRYYEKMMEKENPE 196
F CMS KP + YY+++K++I+ YI T K Q+ P+Y+EK++EKEN +
Sbjct 238 NILPEFTCMSTKPAIAREYYEDNKDKIFDSDYIFLGTKEKSIQMKPPKYFEKLLEKENED 297
>gi|575094569|emb|CDL65925.1| unnamed protein product [uncultured bacterium]
Length=354
Score = 129 bits (324), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/226 (35%), Positives = 117/226 (52%), Gaps = 15/226 (7%)
Query 25 SVQTLLYTDVQKFLKRLRKAY------KSRLRFFCAGEYGEQTARPHYHMILYGWEPTDL 78
S+ TL +Q F KRLR+ + R+R+F GEYG+ T RPHYH IL+GW PTDL
Sbjct 124 SMYTLNKVHLQCFWKRLRQYLVRHVEPEKRIRYFACGEYGDTTFRPHYHAILFGWRPTDL 183
Query 79 KQLYK-IHHNGYYTSEWLEKLWGNGQIQIAQAVPETYRYVAGYVTKKMYEIDGKKANAYY 137
Q K ++ Y S+ L +W NG + + PE+ RYVA Y KK G + Y
Sbjct 184 IQFKKNFQNDTLYLSKSLASIWQNGNVMVGDVTPESCRYVARYCLKKA---TGFDSEIYE 240
Query 138 ELGQQKPFACMSLKPGLGDAYYQEHKEEIWKQGYIQCTN---GKQAQIPRYYEKMMEKEN 194
LG F MS KPG+ Y+ +H +EI K I + G QIP Y+ +++E +
Sbjct 241 RLGVLPEFVTMSRKPGIARKYFDDHYDEIIKYKTINLSTLKGGMSMQIPPYFIRLIEDID 300
Query 195 PERLWRIKQNRQRKAI--EQKRLQFEGKDYKTQLETKERVTKKQTK 238
E IK++ ++ A+ ++ ++ DY T L E + ++ K
Sbjct 301 SELFKEIKRSNKQAALNHQEALMKNTDVDYITYLSFLEGILVREEK 346
>gi|575096096|emb|CDL66976.1| unnamed protein product [uncultured bacterium]
Length=296
Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/190 (37%), Positives = 106/190 (56%), Gaps = 13/190 (7%)
Query 28 TLLYTDVQKFLKRLRKAYK-----SRLRFFCAGEYGEQTARPHYHMILYGWEPTD---LK 79
TL+ VQ F+KRLR+ +++R+ CAGEYG+ + RPHYH++++G+ P+D L
Sbjct 83 TLVKKHVQDFIKRLRRHIDYYGDCTKIRYLCAGEYGDLSLRPHYHLLVFGYYPSDPRLLH 142
Query 80 QLYKIHHNGYYTSEWLEKLWGNGQIQIAQAVPETYRYVAGYVTKKMYEIDGKKANAYYEL 139
L KI N +TS L KLWG G I E+ RY Y KK G+ ++ Y +
Sbjct 143 GLQKIGKNSLFTSPTLTKLWGKGHISFGAITFESARYTCQYALKKQ---TGEHSHYYVDR 199
Query 140 GQQKPFACMSLKPGLGDAYYQEHKEEIWKQGYIQCTNGKQAQIPRYYEKMMEKENPERLW 199
G F S + GLG + H + ++++GY+ NGK+ IPRYY+K+ E+E P+
Sbjct 200 GVIPEFMICSNRNGLGYDFAVSH-DNMFERGYLT-MNGKKIGIPRYYQKICEREIPDYYA 257
Query 200 RIKQNRQRKA 209
K+ R+ A
Sbjct 258 SFKEMRRMSA 267
>gi|530695371|gb|AGT39925.1| replication initiator [Marine gokushovirus]
Length=316
Score = 109 bits (273), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/197 (37%), Positives = 112/197 (57%), Gaps = 15/197 (8%)
Query 22 TPESVQTLLYTDVQKFLKRLRKAYKSR-LRFFCAGEYGEQTARPHYHMILYGWEPTDLKQ 80
T S+ TL Q FLKRLRK Y ++ +RF+ GEYG+ RPHYH +L+ + D K+
Sbjct 94 TNNSLPTLNLRHFQLFLKRLRKKYSNKTIRFYHCGEYGDMNHRPHYHALLFNHDFED-KK 152
Query 81 LYKIHHN-GYYTSEWLEKLWGN-------GQIQIAQAVPETYRYVAGYVTKKMYEIDGKK 132
L+KIH + YYTSE L+ LW + G I ++ YVA Y KK I GK
Sbjct 153 LWKIHKDQNYYTSEVLDGLWTDPKTKSNMGFSTIGDLTFDSAAYVARYCLKK---ITGKN 209
Query 133 ANAYYELGQQKPFACMSLKPGLGDAYYQEHKEEIWKQGYIQCTNGKQAQIPRYYEKMMEK 192
A YY+ G+ +A MS +PG+G+ + + K +++ G+I G++ Q P+YY+++ +
Sbjct 210 AEDYYQ-GRVPEYATMSRRPGIGNGWLDKFKSDVYPSGFI-IHEGQKMQPPKYYDRVTNE 267
Query 193 ENPERLWRIKQNRQRKA 209
+ + + R K R ++A
Sbjct 268 TDEKAVRRSKILRMQEA 284
>gi|17402855|ref|NP_510879.1| hypothetical protein PhiCPG1p9 [Guinea pig Chlamydia phage]
Length=263
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/208 (34%), Positives = 115/208 (55%), Gaps = 16/208 (8%)
Query 37 FLKRLRK-AYKSRLRFFCAGEYGEQTARPHYHMILYGWEPTDLKQLYKIHHNGYYTSEWL 95
FL RLRK Y ++R+F GEYG + RPHYH+++Y ++ D K L K N + SE L
Sbjct 57 FLMRLRKEIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFVSEKL 116
Query 96 EKLWGNGQIQIAQAVPETYRYVAGYVTKKMYEIDGKKANAYYELGQQKP-FACMSLKPGL 154
+LW G + + ++ YVA Y KK ++G + +Y GQ+ P F SLKPG+
Sbjct 117 MRLWPFGFSTVGSVMRQSAGYVARYSLKK---VNGDISQDHY--GQRLPQFLMCSLKPGI 171
Query 155 GDAYYQEHKEEIWKQGYIQCTN-GKQ--AQIPRYYEKMMEKENPERLWRIKQNRQRKAIE 211
G +Y+++K +++ Q Y+ + GK + PRYY+K+ + +PE + +KQ R K +
Sbjct 172 GADWYEKYKRDVYPQDYLVVQDKGKSFTTRPPRYYDKLHSRFDPEEMDEVKQKRIEKVMA 231
Query 212 QKRLQFEGKDYKTQLETKERVTKKQTKK 239
+L + + E K+ + +TK+
Sbjct 232 LPQLT------QDKAEVKQYIFNDRTKR 253
>gi|313766924|gb|ADR80651.1| putative replication initiation protein [Uncultured Microviridae]
Length=285
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 113/209 (54%), Gaps = 27/209 (13%)
Query 28 TLLYTDVQKFLKRLRKAYKSRLRFFCAGEYGEQ--------------TARPHYHMILYGW 73
+L + QKF+KRLRK Y ++R++ GEYGE RPHYH IL+
Sbjct 53 SLDKSHFQKFMKRLRKRYPQKIRYYHCGEYGENCRHGIHTTLCPGCNVGRPHYHAILFNI 112
Query 74 EPTDLKQLYKIHHNGYYTSEWLEKLWGNGQIQIAQAVPETYRYVAGYVTKKMYEIDGKKA 133
+ D + + ++TS+ L ++WG+G Q+ ++ YVA Y KK + G +A
Sbjct 113 DFHDRVLVGQSKGIPHFTSDTLTEIWGHGFTQVGDLTAQSAGYVARYALKK---VTGTQA 169
Query 134 NAYY--------ELGQQKP-FACMSLKPGLGDAYYQEHKEEIWKQGYIQCTNGK-QAQIP 183
+Y E+ +P +A MS KPG+G +Y+++K++++ G + IP
Sbjct 170 EDHYRSIDLTTGEVTYVRPEYATMSRKPGIGKEWYEKYKKDMYPSNQTPSVGGGVKNGIP 229
Query 184 RYYEKMMEKENPERLWRIKQNRQRKAIEQ 212
R+Y+K+MEKE+PE+L +K+ R+ A++
Sbjct 230 RFYDKLMEKEDPEQLEIVKEKRKEFALDN 258
>gi|47566147|ref|YP_022485.1| nonstructural protein [Chlamydia phage 3]
gi|47522482|emb|CAD79483.1| nonstructural protein [Chlamydia phage 3]
Length=315
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/217 (33%), Positives = 119/217 (55%), Gaps = 16/217 (7%)
Query 28 TLLYTDVQKFLKRLRK-AYKSRLRFFCAGEYGEQTARPHYHMILYGWEPTDLKQLYKIHH 86
+L+ + FL+RLR+ Y ++R+F GEYG + RPHYH+++Y ++ D K L K
Sbjct 100 SLVRDHPRLFLRRLREHIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRG 159
Query 87 NGYYTSEWLEKLWGNGQIQIAQAVPETYRYVAGYVTKKMYEIDGKKANAYYELGQQKP-F 145
N + SE L +LW G + ++ YVA Y KK ++G + +Y GQ+ P F
Sbjct 160 NPLFVSEKLMQLWPFGFSTVGSVTRQSAGYVARYSLKK---VNGDSSQDHY--GQRLPEF 214
Query 146 ACMSLKPGLGDAYYQEHKEEIWKQGYIQCTN-GK--QAQIPRYYEKMMEKENPERLWRIK 202
SLKPG+G +Y+++K +++ Q Y+ + GK + + PRYY+K+ + +PE + IK
Sbjct 215 LMCSLKPGIGADWYEKYKRDVYPQDYLVVQDKGKSFKTRPPRYYDKLHSRFDPEEMEEIK 274
Query 203 QNRQRKAIEQKRLQFEGKDYKTQLETKERVTKKQTKK 239
Q R K + L + + E K+ + +TK+
Sbjct 275 QRRVEKFMALPELT------QDKAEVKQYIFNDRTKR 305
>gi|530695350|gb|AGT39906.1| replication initiator [Marine gokushovirus]
Length=330
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/205 (34%), Positives = 109/205 (53%), Gaps = 20/205 (10%)
Query 27 QTLLYTDVQKFLKRLRKAY--------------KSRLRFFCAGEYGEQTARPHYHMILYG 72
+L + D QKF+KRLRK + +RF+ AGEYG Q RPHYH ++
Sbjct 75 NSLRHGDFQKFMKRLRKKFYGHKEYIDVRTGKSSHPIRFYMAGEYGTQRGRPHYHACIFN 134
Query 73 WEPTDLKQLYKIHH-NGYYTSEWLEKLWGNGQIQIAQAVPETYRYVAGYVTKKMY-EIDG 130
+ DLK L + + + Y S LE LW +G + E+ YVA YV KK Y E D
Sbjct 135 FSFEDLKFLRRTNSGSNLYRSTQLEGLWPHGFSSVGDVTFESAAYVARYVMKKQYQEADH 194
Query 131 KKANAYY--ELGQQKP-FACMSLKPGLGDAYYQEHKEEIWKQGYIQCTNGKQAQIPRYYE 187
Y E ++ P + MSLKPG+G + ++K +++ ++ NG +A+ PRYY
Sbjct 195 LLVVDPYTGECVERHPEYNRMSLKPGIGAGFLDKYKSDVFPNDFV-VVNGHKAKPPRYYY 253
Query 188 KMMEKENPERLWRIKQNRQRKAIEQ 212
K +E+++P+ +++ +R K ++Q
Sbjct 254 KRLEQQDPDLYEQVEYSRAMKGLDQ 278
Lambda K H a alpha
0.318 0.134 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1040062966173