bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-35_CDS_annotation_glimmer3.pl_2_4

Length=62
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|471196091|ref|XP_004255004.1|  hypothetical protein EIN_225560     34.3    4.6


>gi|471196091|ref|XP_004255004.1| hypothetical protein EIN_225560 [Entamoeba invadens IP1]
 gi|440295320|gb|ELP88233.1| hypothetical protein EIN_225560 [Entamoeba invadens IP1]
Length=618

 Score = 34.3 bits (77),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 18/34 (53%), Positives = 23/34 (68%), Gaps = 2/34 (6%)

Query  19   DMTTEDNVFIDYTASARCRAKKVAQRPNVESVYL  52
            D+TTED+VFIDY   A  RA  +A  PN E+V +
Sbjct  554  DITTEDSVFIDYKTVAFNRA--IANGPNSETVLV  585



Lambda      K        H        a         alpha
   0.323    0.133    0.379    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 445113758796