bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-36_CDS_annotation_glimmer3.pl_2_1
Length=422
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094327|emb|CDL65713.1| unnamed protein product 142 4e-34
gi|492501778|ref|WP_005867316.1| hypothetical protein 99.8 2e-20
gi|649555288|gb|KDS61825.1| hypothetical protein M095_3808 97.1 2e-19
gi|547920048|ref|WP_022322419.1| putative replication protein 95.9 3e-19
gi|77020121|ref|YP_338244.1| putative replication protein 88.2 3e-16
gi|17402855|ref|NP_510879.1| hypothetical protein PhiCPG1p9 87.0 5e-16
gi|575096096|emb|CDL66976.1| unnamed protein product 87.0 5e-16
gi|47566147|ref|YP_022485.1| nonstructural protein 87.0 7e-16
gi|9634955|ref|NP_054653.1| nonstructural protein 87.0 9e-16
gi|9791179|ref|NP_063900.1| conserved hypothetical protein 86.7 1e-15
>gi|575094327|emb|CDL65713.1| unnamed protein product [uncultured bacterium]
Length=515
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/282 (33%), Positives = 131/282 (46%), Gaps = 47/282 (17%)
Query 51 IDKYTIVNPVTGETFPMFLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYN 110
I+ ++N TG+ P+++ VPC C +C ++KA + RA+ E+ + FITLTYN
Sbjct 59 IEHCYLLNSETGDMIPLYIAVPCGSCIICRKRKANALATRAIMETEITGSSPLFITLTYN 118
Query 111 NEHLPKN-----GVFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIIL 165
EHLPKN + ++QLFFKRLR+ LD + I H+LRY+A EYG +KRPHYH++L
Sbjct 119 PEHLPKNQYGYLTLRKLDLQLFFKRLRSLLDNQSIPHSLRYLACGEYGSNTKRPHYHLLL 178
Query 166 WNFPDN-FDSAYARLTLIESCW-----------------CR--PTGEYNS---------- 195
W FP + F I+ W CR P +Y
Sbjct 179 WGFPLSYFKDILKAQAFIQKAWSYFQVDENGKRIPYYSKCRTCPFNQYKDRRSCSDVAHF 238
Query 196 ---------DGSPVTRS--IGFAYCLPVIDGGINYVMKYMGKREKSP-EGMNPTFMLASR 243
G+ + R IG LP G Y+ KYM K +P P F AS
Sbjct 239 CTGVRLRYPSGAFIYRRYPIGSIKVLPANSGAPAYITKYMVKGSNAPHSSCEPPFRTASN 298
Query 244 KNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLP 285
+ GGIGSAY + + P + V++ TG +P
Sbjct 299 RGGGIGSAYIRAHKDEILRNPSLEALPVVDRVTGSGKLFYMP 340
>gi|492501778|ref|WP_005867316.1| hypothetical protein [Parabacteroides distasonis]
gi|409230407|gb|EKN23271.1| hypothetical protein HMPREF1059_03256 [Parabacteroides distasonis
CL09T03C24]
Length=284
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/263 (32%), Positives = 113/263 (43%), Gaps = 56/263 (21%)
Query 71 VPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPK------------NG 118
VPC +C C + K Q W +R E+ + F+TLTY++EH+P
Sbjct 15 VPCGRCVNCRKNKRQSWVYRLQAEA-DEYPFSLFVTLTYDDEHMPTAMIGEDLFKSTVGV 73
Query 119 VFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFDSAYAR 178
V +IQLF KRLR K D+ + LRY SEYG RPHYH+IL+ FP F +
Sbjct 74 VSKRDIQLFMKRLRKKYDQ----YRLRYFLTSEYGSQGGRPHYHMILFGFP--FTGKHGG 127
Query 179 LTLIESCWCRPTGEYNSDGSPVTRSIGFAYCLPVIDGGINYVMKYMGKREKSPEGMNPT- 237
L+ CW GF P+ I YV KYM ++ P+ +
Sbjct 128 -DLLAECW----------------KNGFVQAHPLTTKEIAYVTKYMYEKSMVPDILKDVK 170
Query 238 ----FMLASRKNGGIGSAYA-EQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYYRMKY 292
FML SR GIG + EQ+ FY P + + G + +PRYY K
Sbjct 171 EYQPFMLCSR-IPGIGYHFLREQILDFYRLHP----RDYVRAFNGMRMA--MPRYYADK- 222
Query 293 MPSTSMCYDPNFIKYFKDTVRWF 315
YD + +Y K+ F
Sbjct 223 ------LYDDDMKEYLKELREAF 239
>gi|649555288|gb|KDS61825.1| hypothetical protein M095_3808 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649560564|gb|KDS66872.1| hypothetical protein M095_2449 [Parabacteroides distasonis str.
3999B T(B) 4]
gi|649561011|gb|KDS67298.1| hypothetical protein M095_2409 [Parabacteroides distasonis str.
3999B T(B) 4]
Length=284
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 112/263 (43%), Gaps = 56/263 (21%)
Query 71 VPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPK------------NG 118
VPC +C C + K Q W +R E+ + F+TLTY++EH+P
Sbjct 15 VPCGRCVNCRKNKRQSWVYRLQAEA-DEYPFSLFVTLTYDDEHIPTAMIGEDLFKTTVGV 73
Query 119 VFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFDSAYAR 178
V +IQLF KRLR K + LRY SEYG RPHYH+IL+ FP F +
Sbjct 74 VSKRDIQLFMKRLRKKY----AQYRLRYFLTSEYGSQGGRPHYHMILFGFP--FTGKHGG 127
Query 179 LTLIESCWCRPTGEYNSDGSPVTRSIGFAYCLPVIDGGINYVMKYMGKREKSPEGMNPT- 237
L+ CW GF P+ I+YV KYM ++ P+ +
Sbjct 128 -DLLAECW----------------KNGFVQAHPLTTKEISYVTKYMYEKSMIPDILKGVK 170
Query 238 ----FMLASRKNGGIGSAYA-EQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYYRMKY 292
FML S K GIG + EQ+ FY P + + G + +PRYY K
Sbjct 171 EYQPFMLCS-KMPGIGYHFLREQILDFYRLHP----RDYVRAFNGMRMA--MPRYYADK- 222
Query 293 MPSTSMCYDPNFIKYFKDTVRWF 315
YD + +Y K+ F
Sbjct 223 ------LYDDDMKEYLKELREAF 239
>gi|547920048|ref|WP_022322419.1| putative replication protein [Parabacteroides merdae CAG:48]
gi|524592960|emb|CDD13572.1| putative replication protein [Parabacteroides merdae CAG:48]
Length=278
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/236 (32%), Positives = 105/236 (44%), Gaps = 49/236 (21%)
Query 71 VPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPE-------- 122
VPC C C + K Q W +R E+ + F+TLTY++EHLP + +
Sbjct 10 VPCGWCVNCRQNKRQSWVYRLQAEA-KEYPLSLFVTLTYDDEHLPIERIGSDLFQTNVAV 68
Query 123 ----EIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFDSAYAR 178
++QLF KRLR K + + +RY SEYG + RPHYH+IL+ FP F A
Sbjct 69 VSKRDVQLFMKRLRKKYE----DYKMRYFVTSEYGAKNGRPHYHMILFGFP--FTGKMAG 122
Query 179 LTLIESCWCRPTGEYNSDGSPVTRSIGFAYCLPVIDGGINYVMKYMGKREKSPEGMNPT- 237
L+ CW GF P+ I YV KYM ++ PE +
Sbjct 123 -DLLAECW----------------QNGFVQAHPLTIKEIAYVCKYMYEKSMCPEILRDEK 165
Query 238 ----FMLASRKNGGIGSAYAE-QLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYY 288
FML SR N GIG + + + FY + P + + G + +PRYY
Sbjct 166 KYKPFMLCSR-NPGIGFGFMKADIIEFYRRHP----RDYVRAWAGHKMA--MPRYY 214
>gi|77020121|ref|YP_338244.1| putative replication protein [Chlamydia phage 4]
gi|59940020|gb|AAX12549.1| putative replication protein [Chlamydia phage 4]
Length=315
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/232 (32%), Positives = 114/232 (49%), Gaps = 34/232 (15%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG-VFPEEIQL 126
++++PC +C C + A+ WS+R + E+ + Q F+TLTY ++HLP+NG + L
Sbjct 50 WILMPCRRCKFCRVQNAKIWSYRCMHEA-SLYSQNCFLTLTYEDQHLPENGSLVRNHPTL 108
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWN--FPDNFDSAYAR---LTL 181
F +RLR + H +RY EYG +RPHYH++++N FPD + R L +
Sbjct 109 FLRRLREHIS----PHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFV 164
Query 182 IE---SCWCRPTGEYNSDGSPVTRSIGFA--YCLPVIDGGINYVMKYMGKREKSPEGMNP 236
E W P G +++ GS +S G+ Y L + I+ + G+R P
Sbjct 165 SEKLMQLW--PYG-FSTVGSVTRQSAGYVARYSLKKVSRDIS--QDHYGQR-------LP 212
Query 237 TFMLASRKNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYY 288
F++ S K G Y + R Y Q D V+ G+S TT PRYY
Sbjct 213 EFLMCSLKPGIGADWYEKYKRDVYPQ-----DYLVVQD-KGKSFTTRPPRYY 258
>gi|17402855|ref|NP_510879.1| hypothetical protein PhiCPG1p9 [Guinea pig Chlamydia phage]
Length=263
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/227 (32%), Positives = 109/227 (48%), Gaps = 30/227 (13%)
Query 71 VPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG-VFPEEIQLFFK 129
+P KC C + A+ WS+R + E+ + Q F+TLTY + HLP+NG + + LF
Sbjct 1 MPWRKCKFCRVQNAKIWSYRCIHEA-SLYSQNCFLTLTYEDRHLPENGSLVRDHPALFLM 59
Query 130 RLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWN--FPDN--FDSAYARLTLIESC 185
RLR ++ H +RY EYG +RPHYH++++N FPD +
Sbjct 60 RLRKEI----YPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFVSEK 115
Query 186 WCR--PTGEYNSDGSPVTRSIGFA--YCLPVIDGGINYVMKYMGKREKSPEGMNPTFMLA 241
R P G +++ GS + +S G+ Y L ++G I+ + G+R P F++
Sbjct 116 LMRLWPFG-FSTVGSVMRQSAGYVARYSLKKVNGDIS--QDHYGQRL-------PQFLMC 165
Query 242 SRKNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYY 288
S K G Y + R Y Q D V+ G+S TT PRYY
Sbjct 166 SLKPGIGADWYEKYKRDVYPQ-----DYLVVQD-KGKSFTTRPPRYY 206
>gi|575096096|emb|CDL66976.1| unnamed protein product [uncultured bacterium]
Length=296
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 62/102 (61%), Gaps = 2/102 (2%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVF-PEEIQL 126
+++VPC +C C +A +W+ R C S+ + F+TLTYN+++LP NG + +Q
Sbjct 33 YVLVPCGQCLECRLHRASEWALRC-CHELKSHDKGIFLTLTYNDDNLPPNGTLVKKHVQD 91
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNF 168
F KRLR +D G +RY+ EYG S RPHYH++++ +
Sbjct 92 FIKRLRRHIDYYGDCTKIRYLCAGEYGDLSLRPHYHLLVFGY 133
>gi|47566147|ref|YP_022485.1| nonstructural protein [Chlamydia phage 3]
gi|47522482|emb|CAD79483.1| nonstructural protein [Chlamydia phage 3]
Length=315
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/232 (32%), Positives = 114/232 (49%), Gaps = 34/232 (15%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG-VFPEEIQL 126
+++ PC KC C + A+ WS+R + E+ + Q F+TLTY + HLP+NG + + +L
Sbjct 50 WVVKPCLKCRFCRVQNAKIWSYRCMHEA-SLYSQNCFLTLTYEDRHLPENGSLVRDHPRL 108
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWN--FPDNFDSAYAR---LTL 181
F +RLR + H +RY EYG +RPHYH++++N FPD + R L +
Sbjct 109 FLRRLREHI----YPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFV 164
Query 182 IE---SCWCRPTGEYNSDGSPVTRSIGFA--YCLPVIDGGINYVMKYMGKREKSPEGMNP 236
E W P G +++ GS +S G+ Y L ++G + + G+R P
Sbjct 165 SEKLMQLW--PFG-FSTVGSVTRQSAGYVARYSLKKVNGDSS--QDHYGQR-------LP 212
Query 237 TFMLASRKNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYY 288
F++ S K G Y + R Y Q D V+ G+S T PRYY
Sbjct 213 EFLMCSLKPGIGADWYEKYKRDVYPQ-----DYLVVQD-KGKSFKTRPPRYY 258
>gi|9634955|ref|NP_054653.1| nonstructural protein [Chlamydia phage 2]
gi|7406595|emb|CAB85595.1| nonstructural protein [Chlamydia phage 2]
Length=336
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/234 (30%), Positives = 115/234 (49%), Gaps = 38/234 (16%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG-VFPEEIQL 126
++++PC +C C + A+ WS+R + E+ + Q F+TLTY + HLP+NG + + +L
Sbjct 71 WVLMPCRRCKFCRVQNAKIWSYRCMHEA-SLYSQNCFLTLTYEDRHLPENGSLVRDHPRL 129
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWN--FPDN--FDSAYARLTLI 182
F RLR + H +RY EYG +RPHYH++++N FPD +
Sbjct 130 FLMRLREHI----YPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFV 185
Query 183 ESCWCR--PTGEYNSDGSPVTRSIGFA--YCLPVIDGGINYVMKYMGKREKSPEGMNPTF 238
R P G +++ GS +S G+ Y L ++G I+ + G+R P F
Sbjct 186 SEKLMRLWPFG-FSTVGSVTRQSAGYVARYSLKKVNGDIS--QDHYGQRL-------PEF 235
Query 239 MLASRKNGGIGSAYAEQLRPFYEQQPDTCDM----SVINIYTGQSLTTMLPRYY 288
++ S K GIG+ + E+ + CD+ ++ G+S T PRYY
Sbjct 236 LMCSLK-PGIGADWYEKYK---------CDVYPQDYLVVQDKGKSFKTRPPRYY 279
>gi|9791179|ref|NP_063900.1| conserved hypothetical protein [Chlamydia pneumoniae phage CPAR39]
gi|7190960|gb|AAF39720.1| conserved hypothetical protein [Chlamydia pneumoniae phage CPAR39]
Length=327
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/232 (32%), Positives = 115/232 (50%), Gaps = 34/232 (15%)
Query 68 FLIVPCHKCPLCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNG-VFPEEIQL 126
++++PC KC C + A+ WS+R + E+ + Q F+TLTY + +LP+NG + +L
Sbjct 62 WVVMPCLKCRFCRVRNAKIWSYRCMHEA-SLYSQNCFLTLTYEDRYLPENGSLVRNHPRL 120
Query 127 FFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWN--FPDNFDSAYAR---LTL 181
F RLR ++ H +RY EYG +RPHYH++++N FPD + R L +
Sbjct 121 FLMRLRKEI----YPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFV 176
Query 182 IES---CWCRPTGEYNSDGSPVTRSIGFA--YCLPVIDGGINYVMKYMGKREKSPEGMNP 236
E W P G +++ GS +S G+ Y L ++G I+ + G+R P
Sbjct 177 SEKLMRLW--PFG-FSTVGSVTRQSAGYVARYSLKKVNGDIS--QDHYGQRL-------P 224
Query 237 TFMLASRKNGGIGSAYAEQLRPFYEQQPDTCDMSVINIYTGQSLTTMLPRYY 288
F++ S K G Y + R Y Q D V+ G+S T PRYY
Sbjct 225 EFLMCSLKPGIGADWYEKYKRDVYPQ-----DYLVVQD-KGKSFKTRPPRYY 270
Lambda K H a alpha
0.323 0.137 0.438 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2754066777756