bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-38_CDS_annotation_glimmer3.pl_2_1
Length=90
Score E
Sequences producing significant alignments: (Bits) Value
gi|548249477|ref|WP_022467295.1| putative uncharacterized protein 39.3 0.20
gi|587775352|gb|EXA69171.1| putative phage late control D protein 34.3 6.5
gi|671585014|ref|WP_031561821.1| DNA primase 34.3 6.9
gi|546203475|dbj|BAN88718.1| hypothetical protein AB237_2794 34.3 7.0
gi|589425651|gb|EXH09692.1| putative phage late control D protein 34.3 7.2
gi|490980587|ref|WP_004842350.1| hypothetical protein 34.3 7.2
>gi|548249477|ref|WP_022467295.1| putative uncharacterized protein [Subdoligranulum sp. CAG:314]
gi|524772170|emb|CDE71828.1| putative uncharacterized protein [Subdoligranulum sp. CAG:314]
Length=2623
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (64%), Gaps = 0/47 (0%)
Query 2 AELNTERKKYLFIEAMSNLIQAEAAKNSGLAAVENAATNRAQQAWRE 48
+EL TE KKY + +N Q E+A NSGL A+ENAAT QA +E
Sbjct 751 SELETEYKKYKKTDYTANWSQLESAYNSGLTAIENAATIELAQAAKE 797
>gi|587775352|gb|EXA69171.1| putative phage late control D protein [Acinetobacter baumannii
984213]
Length=501
Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 0/28 (0%)
Query 43 QQAWRELTTQYEYGIEKTPKFWMDLGDR 70
Q+A+ L TQY G K+P++W+ LGD+
Sbjct 430 QKAYTGLKTQYTIGQNKSPRYWVTLGDQ 457
>gi|671585014|ref|WP_031561821.1| DNA primase [Acinetobacter baumannii]
Length=500
Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 0/28 (0%)
Query 43 QQAWRELTTQYEYGIEKTPKFWMDLGDR 70
Q+A+ L TQY G K+P++W+ LGD+
Sbjct 430 QKAYTGLKTQYTIGQNKSPRYWVTLGDQ 457
>gi|546203475|dbj|BAN88718.1| hypothetical protein AB237_2794 [Acinetobacter baumannii NCGM
237]
Length=500
Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 0/28 (0%)
Query 43 QQAWRELTTQYEYGIEKTPKFWMDLGDR 70
Q+A+ L TQY G K+P++W+ LGD+
Sbjct 430 QKAYTGLKTQYTIGQNKSPRYWVTLGDQ 457
>gi|589425651|gb|EXH09692.1| putative phage late control D protein [Acinetobacter baumannii
1245593]
gi|589532306|gb|EXI12120.1| putative phage late control D protein [Acinetobacter baumannii
694762]
Length=500
Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 0/28 (0%)
Query 43 QQAWRELTTQYEYGIEKTPKFWMDLGDR 70
Q+A+ L TQY G K+P++W+ LGD+
Sbjct 430 QKAYTGLKTQYTIGQNKSPRYWVTLGDQ 457
>gi|490980587|ref|WP_004842350.1| hypothetical protein [Acinetobacter baumannii]
gi|479985865|gb|ENV29105.1| hypothetical protein F961_02395 [Acinetobacter baumannii NIPH
60]
Length=500
Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 0/28 (0%)
Query 43 QQAWRELTTQYEYGIEKTPKFWMDLGDR 70
Q+A+ L TQY G K+P++W+ LGD+
Sbjct 430 QKAYTGLKTQYTIGQNKSPRYWVTLGDQ 457
Lambda K H a alpha
0.313 0.126 0.355 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 438678852570