bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-4_CDS_annotation_glimmer3.pl_2_8

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|671244107|gb|KFF29024.1|  cold-shock protein                       33.9    5.0
gi|659649627|emb|CDR76316.1|  Conserved hypothetical protein (fra...  33.5    10.0


>gi|671244107|gb|KFF29024.1| cold-shock protein [Chryseobacterium piperi]
Length=64

 Score = 33.9 bits (76),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 20/59 (34%), Positives = 31/59 (53%), Gaps = 2/59 (3%)

Query  48   DGYIKALNAEYSASYDINSPFKYGEDSYVPASVLKSRMDALNSKWQFDKRYWTEGLNAL  106
            +G +K  N   +  +   SP   GED +V AS L +R+   N K  F+ +   +GLNA+
Sbjct  3    EGTVKFFNE--TKGFGFISPSNGGEDIFVHASGLSTRIIRENDKVTFEVQKGEKGLNAI  59


>gi|659649627|emb|CDR76316.1| Conserved hypothetical protein (fragment) [Lactobacillus delbrueckii 
subsp. bulgaricus]
Length=78

 Score = 33.5 bits (75),  Expect = 10.0, Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (3%)

Query  29  MMAEAKGL-QINNKAAEDTADGYIKALNAEYSASYDINSPFKYGEDSYVPASVLKSRMDA  87
           +  +  GL + NNK   +  D  + AL +E + S+  +  F++G D ++ A  L  R+D 
Sbjct  11  VFCDVNGLHETNNKFGHEAGDRMLIALASELAKSFGQDMSFRFGGDDFL-AIALDERLDK  69

Query  88  LNSKWQF  94
           + +K  F
Sbjct  70  VQAKRYF  76



Lambda      K        H        a         alpha
   0.313    0.128    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 438030119100