bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters



Query= Contig-6_CDS_annotation_glimmer3.pl_2_1

Length=59
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|575094326|emb|CDL65712.1|  unnamed protein product                 76.6    2e-14
gi|494306153|ref|WP_007173049.1|  hypothetical protein                36.6    0.69
gi|609718276|emb|CDN73650.1|  conserved hypothetical protein          33.9    5.3
gi|326919658|ref|XP_003206096.1|  PREDICTED: leucine-rich repeat ...  33.9    6.0
gi|494308783|ref|WP_007173938.1|  hypothetical protein                33.5    8.5


>gi|575094326|emb|CDL65712.1| unnamed protein product [uncultured bacterium]
Length=758

 Score = 76.6 bits (187),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 34/59 (58%), Positives = 45/59 (76%), Gaps = 0/59 (0%)

Query  1    MHRSFTGLPQLGQQFLLVDPNAVNQVFSVTEYTDKIFGYVKFNATARLPISRVAIPRLD  59
            M RSF  +P+LGQ F ++ P +VN VFSVTE +DKI G + F+ TA+LPISRV +PRL+
Sbjct  700  MFRSFDNVPELGQSFTVMQPGSVNNVFSVTEVSDKILGQIHFDCTAQLPISRVVVPRLE  758


>gi|494306153|ref|WP_007173049.1| hypothetical protein [Prevotella bergensis]
 gi|270333881|gb|EFA44667.1| putative capsid protein (F protein) [Prevotella bergensis DSM 
17361]
Length=519

 Score = 36.6 bits (83),  Expect = 0.69, Method: Compositional matrix adjust.
 Identities = 22/60 (37%), Positives = 29/60 (48%), Gaps = 4/60 (7%)

Query  3    RSFTGLPQLGQQFLLVDPNAVNQVFSV----TEYTDKIFGYVKFNATARLPISRVAIPRL  58
            R +T  PQL      +DP  +N VF V    TE TD +FG   FN      +S   +PR+
Sbjct  460  RRWTTFPQLEIADFKIDPGCLNSVFPVEFNGTESTDCVFGGCNFNIVKVSDMSVDGMPRV  519


>gi|609718276|emb|CDN73650.1| conserved hypothetical protein [Elizabethkingia anophelis]
Length=537

 Score = 33.9 bits (76),  Expect = 5.3, Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 0/48 (0%)

Query  9    PQLGQQFLLVDPNAVNQVFSVTEYTDKIFGYVKFNATARLPISRVAIP  56
            P L Q F+  D NA++++F+V + TDK + ++    TA+  +S    P
Sbjct  486  PVLNQSFIECDKNALSRIFAVEDDTDKFYCHLYQKITAKRKMSYFGDP  533


>gi|326919658|ref|XP_003206096.1| PREDICTED: leucine-rich repeat transmembrane neuronal protein 
1-like [Meleagris gallopavo]
Length=521

 Score = 33.9 bits (76),  Expect = 6.0, Method: Composition-based stats.
 Identities = 15/32 (47%), Positives = 21/32 (66%), Gaps = 0/32 (0%)

Query  18   VDPNAVNQVFSVTEYTDKIFGYVKFNATARLP  49
            VDP +VN +  VT  +D++FGY    ATA +P
Sbjct  367  VDPTSVNTLSPVTNNSDQMFGYGSAAATAYVP  398


>gi|494308783|ref|WP_007173938.1| hypothetical protein [Prevotella bergensis]
 gi|270333035|gb|EFA43821.1| putative capsid protein (F protein) [Prevotella bergensis DSM 
17361]
Length=553

 Score = 33.5 bits (75),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 19/60 (32%), Positives = 28/60 (47%), Gaps = 4/60 (7%)

Query  3    RSFTGLPQLGQQFLLVDPNAVNQVFSV----TEYTDKIFGYVKFNATARLPISRVAIPRL  58
            R +T  PQL      +DP  +N +F V    TE  D ++G   FN      +S   +PR+
Sbjct  494  RRWTTFPQLEIADFKIDPGCLNSIFPVDYNGTEANDCVYGGCNFNIVKVSDMSVDGMPRV  553



Lambda      K        H        a         alpha
   0.326    0.140    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 431863444341