bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-6_CDS_annotation_glimmer3.pl_2_2
Length=107
Score E
Sequences producing significant alignments: (Bits) Value
gi|575094325|emb|CDL65711.1| unnamed protein product 43.1 0.002
gi|545466729|ref|WP_021703231.1| hypothetical protein 37.0 0.82
gi|659907744|gb|KEK21553.1| Swarming motility protein SwrC 37.0 1.3
gi|491043802|ref|WP_004905465.1| nucleotide-binding protein 36.2 1.4
gi|664797803|gb|AIF66038.1| penicillin-binding protein 35.8 3.2
gi|586611560|gb|AHJ75006.1| nucleotide-binding protein 35.4 3.2
gi|502641509|ref|WP_012877939.1| amidohydrolase 35.4 3.8
gi|491052900|ref|WP_004914551.1| putative nucleotide-binding pro... 34.3 8.6
gi|496196903|ref|WP_008916740.1| putative nucleotide-binding pro... 34.3 8.6
>gi|575094325|emb|CDL65711.1| unnamed protein product [uncultured bacterium]
Length=107
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query 4 NTKPDYKCVECNFDVQKDFERTKPNLGLTPQQVAEMAKRGIPVSPMNVN-FIDVNGDASW 62
N + Y V C + E L +TP + ++A++G+PVS N N F + D+
Sbjct 14 NPREVYHRVTCRRTISD--EPVVSGLAITPSDIEKLARQGVPVSVPNANSFYSI--DSGL 69
Query 63 NIEPQFRRDMDMATAWEMEKASQRKALQVLRQKK 96
+ P+ + D D T WE+ + S+ + ++ +++K
Sbjct 70 EVPPELKVDADRNTLWELSQQSKARIMKARKREK 103
>gi|545466729|ref|WP_021703231.1| hypothetical protein [Vibrio proteolyticus]
gi|543443778|dbj|GAD65239.1| hypothetical protein VPR01S_01_00120 [Vibrio proteolyticus NBRC
13287]
Length=161
Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query 4 NTKPDYKCVECNFDVQKDFERTKPNLG-LTPQQV-----AEMAKRGIPVSPMNVNFIDVN 57
+T+ D++ VE +FD+QKD + G +Q+ A + KRG+ V+ M + +
Sbjct 27 STRFDFRNVEASFDIQKDDSVKLSSEGDFQLKQMRDILRANLTKRGVDVNAMEAKDAEAS 86
Query 58 GDASWNIEPQFRRDMDMATAWEMEK 82
G +W+ + F++ +D ATA ++ K
Sbjct 87 G-KNWHQQVVFKQGIDAATAKKIVK 110
>gi|659907744|gb|KEK21553.1| Swarming motility protein SwrC [Bacillus manliponensis]
Length=1031
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 27/72 (38%), Positives = 36/72 (50%), Gaps = 7/72 (10%)
Query 30 GLTPQQVAEMAKRGIPVSPMNVNFIDVNGDASW------NIEPQFRRDMDMATAWEMEKA 83
G TP+ VAE I N+N ++V AS+ IE F +DMD ATA E+E+A
Sbjct 54 GATPEDVAENVSEPIEQQIQNLNGVNVVSSASYQNASSIQIEYDFEKDMDKATA-EVEEA 112
Query 84 SQRKALQVLRQK 95
+ L QK
Sbjct 113 LSKVTLPEGTQK 124
>gi|491043802|ref|WP_004905465.1| nucleotide-binding protein [Providencia rettgeri]
gi|291312441|gb|EFE52894.1| hypothetical protein PROVRETT_08369 [Providencia rettgeri DSM
1131]
Length=163
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query 8 DYKCVECNFDVQKDFERTKPN-------LGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDA 60
D+K VE +F++ E K L L +MAKRGI + +NV V+
Sbjct 31 DFKNVEASFELNDKNESVKITSESDFQVLQLVDILREKMAKRGIDGAVLNVPEDIVHSGK 90
Query 61 SWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQ 94
++++E F++ +D ATA ++ K + L+V Q
Sbjct 91 TYSVEVTFKQGIDAATAKKIVKLIKDSKLKVQAQ 124
>gi|664797803|gb|AIF66038.1| penicillin-binding protein [Terribacillus aidingensis]
Length=727
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query 30 GLTPQQVAE----MAKRGIPVSPMNVNFI-DVNGDASWNIEPQFRRDMDMATAWEMEKAS 84
GLTP ++AE A G + ++N I D NG+A++ EPQ TAW+M +
Sbjct 467 GLTPLKIAEGFRTFAHEGQWIESQSINAIYDRNGEAAFKAEPQTEDVFSEQTAWDMTRML 526
Query 85 Q 85
Q
Sbjct 527 Q 527
>gi|586611560|gb|AHJ75006.1| nucleotide-binding protein [Kosakonia sacchari SP1]
Length=163
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query 4 NTKPDYKCVECNFDVQKDFERTKPNLGLTPQQV--------AEMAKRGIPVSPMNVNFID 55
T+ D++ VE FD+ ++ ++T L + QV A++ KRGI + ++V
Sbjct 27 GTRFDFRNVEATFDLNEE-KQTIKVLSESDFQVNQLLDILRAKLLKRGIEGASLDVPEEF 85
Query 56 VNGDASWNIEPQFRRDMDMATAWEMEKASQRKALQV 91
V+ +W +E + ++ +D ATA ++ K + L+V
Sbjct 86 VHSGKTWFVEAKLKQGIDAATAKKIIKLIKDSKLKV 121
>gi|502641509|ref|WP_012877939.1| amidohydrolase [Xylanimonas cellulosilytica]
gi|269955966|ref|YP_003325755.1| amidohydrolase [Xylanimonas cellulosilytica DSM 15894]
gi|269304647|gb|ACZ30197.1| amidohydrolase [Xylanimonas cellulosilytica DSM 15894]
Length=373
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 19/55 (35%), Positives = 27/55 (49%), Gaps = 2/55 (4%)
Query 30 GLTPQQVAEMAKRGIPVSP--MNVNFIDVNGDASWNIEPQFRRDMDMATAWEMEK 82
G+TP Q E+A RG+PV+P + V V D + P F R + A E+
Sbjct 216 GVTPDQAVELAARGVPVTPTLLQVERFGVIADQAQERYPAFARRLRAMHARRYEQ 270
>gi|491052900|ref|WP_004914551.1| putative nucleotide-binding protein [Providencia rettgeri]
gi|414092218|gb|EKT53897.1| putative nucleotide-binding protein [Providencia rettgeri Dmel1]
Length=163
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/94 (29%), Positives = 46/94 (49%), Gaps = 7/94 (7%)
Query 8 DYKCVECNFDVQKDFERTKPN-------LGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDA 60
D+K VE +F++ E K L L +MAKRGI + +NV V+
Sbjct 31 DFKNVEASFELNDKNESVKITSESDFQVLQLVDILREKMAKRGIDGAVLNVPEDIVHSGK 90
Query 61 SWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQ 94
++++E F++ +D A A ++ K + L+V Q
Sbjct 91 TYSVEVTFKQGIDAAIAKKIVKLIKDSKLKVQAQ 124
>gi|496196903|ref|WP_008916740.1| putative nucleotide-binding protein [Providencia sneebia]
gi|414091854|gb|EKT53535.1| putative nucleotide-binding protein [Providencia sneebia DSM
19967]
Length=163
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/98 (29%), Positives = 48/98 (49%), Gaps = 7/98 (7%)
Query 4 NTKPDYKCVECNFDVQKDFERTKPN-------LGLTPQQVAEMAKRGIPVSPMNVNFIDV 56
T+ D+K V +F++ + E K L L +MAKRGI + +NV V
Sbjct 27 TTRWDFKNVSASFELNEKNESIKVTSESDFQVLQLLDILREKMAKRGIDGAVLNVPEDIV 86
Query 57 NGDASWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQ 94
+ S+++E ++ +D A A ++ KA + L+V Q
Sbjct 87 HSGKSYSVEVTLKQGIDTAIAKKIVKAIKDSKLKVQAQ 124
Lambda K H a alpha
0.317 0.131 0.398 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 428991919341