bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-7_CDS_annotation_glimmer3.pl_2_7
Length=91
Score E
Sequences producing significant alignments: (Bits) Value
gi|403419410|emb|CCM06110.1| predicted protein 37.4 0.58
gi|488343350|ref|WP_002412735.1| hypothetical protein 32.7 5.9
gi|499073363|gb|AGL73191.1| ORF1 34.3 7.8
gi|499073371|gb|AGL73197.1| ORF1 34.3 8.0
gi|499073367|gb|AGL73194.1| ORF1 34.3 8.0
>gi|403419410|emb|CCM06110.1| predicted protein [Fibroporia radiculosa]
Length=250
Score = 37.4 bits (85), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (43%), Gaps = 21/96 (22%)
Query 14 LKFINDFYDYLSAHPE--SDSFLKSRTV------------GFVCPPKENISFWNDLNTTL 59
LKFI D Y YL A + + F++ R V F+ E I FWN L +
Sbjct 67 LKFIADIYGYLRADKDILGNPFMEGRLVVEKLTRQSLECADFIAHYSEKIVFWNKLGKDI 126
Query 60 SSLKNSVTQR-------IFQKVKHKNYNDISGLLFN 88
+ QR + ++++ + +N+IS ++
Sbjct 127 DRETRTTIQRFQETLSSLMEQIRRRTFNEISAPIYR 162
>gi|488343350|ref|WP_002412735.1| hypothetical protein [Enterococcus faecalis]
gi|329571850|gb|EGG53528.1| hypothetical protein HMPREF9520_02486 [Enterococcus faecalis
TX1467]
Length=67
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 20/25 (80%), Gaps = 0/25 (0%)
Query 5 SVDYWSKKELKFINDFYDYLSAHPE 29
+++++SK+++ F+N Y Y+S HPE
Sbjct 32 TIEHYSKQQVDFLNILYGYISRHPE 56
>gi|499073363|gb|AGL73191.1| ORF1 [Kamphang Phet virus]
Length=2560
Score = 34.3 bits (77), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query 7 DYWSKKELKFINDFYD-------YLSAHPESDSF------LKSRTVGFVCPPKENISFWN 53
DY +K +L+ + FY+ Y+ + ES+ + L +++ G +C K +
Sbjct 517 DYNTKLDLQILMQFYNLNGSNVVYVETYSESEDYDGKVVQLLAQSTGDICV-KPTCILFT 575
Query 54 DLNTTLSSLKNSVTQRIFQKVKHKNY 79
L+TT+ + VT+R+ +++KH+ +
Sbjct 576 GLDTTVRDVDVKVTERLVKRIKHQEH 601
>gi|499073371|gb|AGL73197.1| ORF1 [Kamphang Phet virus]
Length=2558
Score = 34.3 bits (77), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query 7 DYWSKKELKFINDFYD-------YLSAHPESDSF------LKSRTVGFVCPPKENISFWN 53
DY +K +L+ + FY+ Y+ + ES+ + L +++ G +C K +
Sbjct 517 DYNTKLDLQILMQFYNLNGSNVVYVETYSESEDYDGKVVQLLAQSTGDICV-KPTCILFT 575
Query 54 DLNTTLSSLKNSVTQRIFQKVKHKNY 79
L+TT+ + VT+R+ +++KH+ +
Sbjct 576 GLDTTVRDVDVKVTERLVKRIKHQEH 601
>gi|499073367|gb|AGL73194.1| ORF1 [Kamphang Phet virus]
Length=2558
Score = 34.3 bits (77), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query 7 DYWSKKELKFINDFYD-------YLSAHPESDSF------LKSRTVGFVCPPKENISFWN 53
DY +K +L+ + FY+ Y+ + ES+ + L +++ G +C K +
Sbjct 517 DYNTKLDLQILMQFYNLNGSNVVYVETYSESEDYDGKVVQLLAQSTGDICV-KPTCILFT 575
Query 54 DLNTTLSSLKNSVTQRIFQKVKHKNY 79
L+TT+ + VT+R+ +++KH+ +
Sbjct 576 GLDTTVRDVDVKVTERLVKRIKHQEH 601
Lambda K H a alpha
0.320 0.135 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 437208516180