bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggnogv4.proteins.all.fa
           14,875,530 sequences; 5,112,597,290 total letters





Query= Contig-1_CDS_annotation_glimmer3.pl_2_6

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  585502.HMPREF0645_1835                                              72.4    9e-11


> 585502.HMPREF0645_1835
Length=553

 Score = 72.4 bits (176),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 112/523 (21%), Positives = 192/523 (37%), Gaps = 113/523 (22%)

Query  12   IPEMKASRTRFNRD-----QTILTTFDSGKLIPFYVDEVLPGDTFSVDTSAIIR---MTT  63
            IP++KA+R   NR+     Q  L T  +G L+P    +++P D   ++    +R   M T
Sbjct  5    IPKIKATRPNRNRNAFDLSQRHLFTAHAGMLLPVLNLDLIPHDHVEINAQDFMRTLPMNT  64

Query  64   PKYPVMDDAFIDFYYFYCPNRILWDNFKQFMGEVEETPWMPKKE-------YSVPKIVIN  116
              +  M      + +F+ P   LW  F QF+  + +      K          VP   ++
Sbjct  65   AAFASMRGV---YEFFFVPYHQLWAQFDQFITGMNDFHSSANKSIQGGTSPLQVPYFNVD  121

Query  117  --------GKEKSPEPYED----------SILDYMGIPTKVKKV----------------  142
                    GKE      +D           +LD +G   K                    
Sbjct  122  SVFNSLNTGKESGSGSTDDLQYKFKYGAFRLLDLLGYGRKFDSFGTAYPDNVSGLKNNLD  181

Query  143  FKVNALPIRAYVKIWNEFFRDENVDNAATIKTDDASIDYQDGGESEDK-TDDILKKAIGG  201
            +  +   I AY KI+ +++R+ N +N     TD  + D   GG  + K   D+ K     
Sbjct  182  YNCSVFRILAYNKIYQDYYRNSNYEN---FDTDSFNFDKFKGGLVDAKVVADLFKLRYRN  238

Query  202  GRCLPVNKFHDYFTSCLPYPQRGPEVTLPMQGNAPVGMYKNDSLTEFGTINGNSEIFLNQ  261
             +        DYFT+                        +   L  F T          +
Sbjct  239  AQT-------DYFTNL-----------------------RQSQLFSFTTA--------FE  260

Query  262  ALNGSALAPKISNSSKEGARRALVTGSTNPTTQVSDAAYLAANLGETTATTINDLRKAVA  321
             ++   +AP           R  V    +  T+V+      ++ G+ + +++   R A A
Sbjct  261  DVDNINIAP-----------RDYVKSDGSNFTRVNFGVDTDSSEGDFSVSSL---RAAFA  306

Query  322  VQQYYEALARGGSRYREQVQALWDVVISDKTVQIPEYLGGGRYHVNMNQIVQTSGQQSST  381
            V +      R G  +++Q++A + V I D       YLGG    + ++ + QTSG  ++ 
Sbjct  307  VDKLLSVTMRAGKTFQDQMRAHYGVEIPDSRDGRVNYLGGFDSDMQVSDVTQTSGTTATE  366

Query  382  DTP-IGETG--AMSVTPVNESSFTKSFEEHGFIIGVCCVRHNHSYQ-QGLERLWSRTDRL  437
              P  G  G  A   T           +EHG ++ +  +     Y    L+ +  + DR 
Sbjct  367  YKPEAGYLGRVAGKGTGSGRGRIVFDAKEHGVLMCIYSLVPQIQYDCTRLDPMVDKLDRF  426

Query  438  DYYVPQFANLGEQPVKKKEI-MLTGEASDEETFGYQEAWADYR  479
            DY+ P+F NLG QP+    I             GYQ  +++Y+
Sbjct  427  DYFTPEFENLGMQPLNSSYISSFCTTDPKNPVLGYQPRYSEYK  469



Lambda      K        H        a         alpha
   0.316    0.133    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1229548503040