bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggnogv4.proteins.all.fa
14,875,530 sequences; 5,112,597,290 total letters
Query= Contig-29_CDS_annotation_glimmer3.pl_2_2
Length=335
Score E
Sequences producing significant alignments: (Bits) Value
83406.HDN1F_26530 38.9 1.9
> 83406.HDN1F_26530
Length=4563
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 80/297 (27%), Positives = 139/297 (47%), Gaps = 58/297 (20%)
Query 39 SSSAINGIANNISKISGITSAN--NAWSAQQAEELRKWQEAQTDKAMKYNSQEAEKNRSW 96
S++A+ G++N K+ G ++ NA S+ QA+ L Q K +
Sbjct 843 STAALKGLSN---KLVGDLGSDQLNALSSTQAQSLSAAQL----KGISTEQMSKLGTGDI 895
Query 97 QEYMSSTAHQREIADLKAAGLNPVLSAMGGNGASVTSGATASSSAP------SGAMGSTD 150
QE+ S +++ A LN A+G N +++T+ + A+ +A S ++ +
Sbjct 896 QEFSS-----KQVTAFSADQLN----ALGTNISALTTESVAALTAEQVKGLSSASIKALT 946
Query 151 TSGSSALVNLLGAMLTS-------TTELSKMSTSALTNLAV-------ADKYNSVNKYLG 196
T ++AL N + LTS T +L+K+ST+AL L+ D+ N+++
Sbjct 947 TDQAAALTNTQVSGLTSGNIKGLETADLAKLSTAALKGLSDKLIKDMGTDQLNALDSDQV 1006
Query 197 ELSSATQLKGYQISAQTALSTANISAAAQRYVSDNNLKGSLANAAATKIAATIHAEASKY 256
+ SATQLKG + L TA+I + + V+ + + NA T I+A
Sbjct 1007 QSLSATQLKGISTEQMSKLGTADIKEFSGKQVA--SFSAAQLNALGTNISA--------- 1055
Query 257 AADKGYLSSENVANINASVNKQLKEMGIKA-DFDFAQMYPNNLYQMTGATVNNLKGI 312
L++E+VA++ A+ K L+ IKA D A N Q++G T +N+KG+
Sbjct 1056 ------LTTESVASLTAAQIKGLESDSIKALTTDQAAALKNT--QLSGLTSDNIKGL 1104
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 133/296 (45%), Gaps = 56/296 (19%)
Query 39 SSSAINGIANNISKISGITSANNAWSAQQAEELRKWQEAQTDKAMKYNSQEAEKNRSWQE 98
S++A+ G++ + K G T NA ++ QA+ L Q +K S E Q
Sbjct 1383 STAALKGLSEKLIKEMG-TDQLNALTSDQAQSLSAAQ-------LKGISTE-------QM 1427
Query 99 YMSSTAHQREIADLKAAGLN-PVLSAMGGNGASVTSGATASSSA------PSGAMGSTDT 151
TA +E A +AA L+A+G N + +++ AS +A S + + T
Sbjct 1428 SKLGTADIQEFAGKQAASFTADQLNALGANFSKLSTDGVASLTAAQIKGLESDTIKALTT 1487
Query 152 SGSSALVNLLGAMLTS-------TTELSKMSTSALTNLAVA-------DKYNSVNKYLGE 197
++AL N + LTS T +L+K+ST+AL L+ A D+ N++ +
Sbjct 1488 DQAAALKNTQLSGLTSDNIKGLETEDLAKLSTAALKGLSAAQLGQMGTDQLNAMTSDQAQ 1547
Query 198 LSSATQLKGYQISAQTALSTANISAAAQRYVSDNNLKGSLANAAATKIAATIHAEASKYA 257
SATQLKG + L TA++ + V+ L NA T I+A
Sbjct 1548 SLSATQLKGITTEQMSKLGTADVKDFTDKQVA--ALSADQLNALGTNISA---------- 1595
Query 258 ADKGYLSSENVANINASVNKQLKEMGIKA-DFDFAQMYPNNLYQMTGATVNNLKGI 312
L++++VA + A+ K L IKA D A N Q++G T +N+KG+
Sbjct 1596 -----LTTDSVAALTATQVKGLSSDTIKALTTDQAAALKNT--QLSGLTSDNIKGL 1644
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 69/242 (29%), Positives = 116/242 (48%), Gaps = 49/242 (20%)
Query 98 EYMSS--TAHQREIADLKAAGLN-PVLSAMGGNGASVTSGATASSSAP------SGAMGS 148
E MS TA +++ + +AA L+ L+A+G N +++T+ + A+ +A S A+ +
Sbjct 1155 EQMSKLGTADVKDLTEKQAAALSADQLNALGTNISALTTDSVAALTATQVKGLASDAIKA 1214
Query 149 TDTSGSSALVNLLGAMLTS-------TTELSKMSTSALTNLAV-------ADKYNSVNKY 194
T ++AL N + LTS T +L+K+ST AL L+ D++N++
Sbjct 1215 LTTDQAAALTNTQISGLTSDNIKGLETADLAKLSTDALKGLSDKLIKDMGTDQFNALGSD 1274
Query 195 LGELSSATQLKGYQISAQTALSTANISAAAQRYV---SDNNLKGSLANAAATKIAATIHA 251
+ SATQ+KG + L TA++ ++ V S + L NA T I+A
Sbjct 1275 QVQSLSATQVKGISTEQMSKLGTADVREFTEKQVVAFSADQL-----NALGTNISA---- 1325
Query 252 EASKYAADKGYLSSENVANINASVNKQLKEMGIKA-DFDFAQMYPNNLYQMTGATVNNLK 310
L++++VA + A+ K L IKA D A N Q++G T +N+K
Sbjct 1326 -----------LTTDSVAALTATQVKGLASASIKALTTDQAAALKNT--QLSGLTSDNIK 1372
Query 311 GI 312
G
Sbjct 1373 GF 1374
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 148/324 (46%), Gaps = 64/324 (20%)
Query 23 SGASSAVTANRGASGGSSSAINGIAN-NISKISGITSANNAWSAQQAEELRKWQEAQTDK 81
S A +A N SG +S I GI +++KIS T A SA Q ++ TD+
Sbjct 541 STAQAAALKNTQLSGLNSDNIKGIETADLAKIS--TGALKGLSAAQIGQMG------TDQ 592
Query 82 AMKYNSQEAEKNRSWQ------EYMSS--TAHQREIADLKAAGLNPV-LSAMGGNGASVT 132
S +A+ + Q E MS TA ++ D + A + L+A+G N +++T
Sbjct 593 LNALTSDQAQSLSAAQLKGITTEQMSKLGTADIKDFTDKQVAAFSAAQLNALGTNISALT 652
Query 133 SGATASSSAP------SGAMGSTDTSGSSALVNLLGAMLTS-------TTELSKMSTSAL 179
+ + A+ +A S A+ + + ++AL N + LTS T +L+++ST+AL
Sbjct 653 TDSVAALTATQVKGLSSDAIKALTSDQAAALKNTQVSGLTSDNIKGLETQDLAQISTAAL 712
Query 180 TNLAVA-------DKYNSVNKYLGELSSATQLKGYQISAQTALSTANISAAAQRYV---S 229
L+ + D++N++ + SATQLKG + L TA+I + V S
Sbjct 713 KGLSASQLGQMGTDQFNALTSGQAQSLSATQLKGISTEQMSKLGTADIKEFTGKQVAAFS 772
Query 230 DNNLKGSLANAAATKIAATIHAEASKYAADKGYLSSENVANINASVNKQLKEMGIKA-DF 288
+ L NA T I+A L++++VA + AS K L IKA
Sbjct 773 ADQL-----NALGTNISA---------------LTTDSVAALAASQIKGLTSDSIKALTT 812
Query 289 DFAQMYPNNLYQMTGATVNNLKGI 312
D A N Q+ G T +N+KG+
Sbjct 813 DQAAALKNT--QLAGLTSDNIKGL 834
Lambda K H a alpha
0.304 0.118 0.316 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 590854502550