bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggnogv4.proteins.all.fa 14,875,530 sequences; 5,112,597,290 total letters Query= Contig-40_CDS_annotation_glimmer3.pl_2_1 Length=58 Score E Sequences producing significant alignments: (Bits) Value 3847.GLYMA14G04130.1 32.0 8.1 > 3847.GLYMA14G04130.1 Length=1802 Score = 32.0 bits (71), Expect = 8.1, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (2%) Query 3 ERWEEQTFNERIGLGLEFGENIVNLLYKGRKRRGSTRTRSTREGKTVTTETYTES 57 E WEE T ERI L L GE IV+L+ +G R + E +E ES Sbjct 1459 ELWEEYTSGERITLHLYLGE-IVSLICEGMSSSSWASKRKSAEAICRLSEVLGES 1512 Lambda K H a alpha 0.313 0.131 0.370 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 125589308220