FEATURES             Location/Qualifiers
     gene            111..344
                     /locus_tag="Alpa_01"
     CDS             111..344
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MMGMKDLDRKDRELIKDWIYEGIHAGKEISGEILNWLMRGTPKTITEITSRLEEMFDAKGNETGSKMVKQTITKGAK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            344..1342
                     /locus_tag="Alpa_02"
     CDS             344..1342
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MCLYPKLIRNKKYLPTKKNNYNPPKMVDPRTAYITAACGKCLECRKQKQREWLVRMSEELRTEPNAYFMTLTISDENYEILKNTCKSEDKNTIATKAIRLTLERIRKKTGKSIKHWFITELGHEKTERLHLHGIVWGIGTDQLIKEKWNYGITYTGNFVNEKTINYITKYMTKIDEDHPEFVGKVLCSKGIGAGYIKRADASKHKYEKGKTIETYRLRNGAKINLPIYYRNKLFTEEERELLFIDKIEKGFIYVLGTKVHRDDEEYYIQLLEEGRKKEAILYGEHNQDWEQQKYINRLRKQKKKQEQELNQLEIYWALERAKDYTQLETCPF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1889..2107
                     /locus_tag="Alpa_03"
     CDS             1889..2107
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MAATKFTAIYVNNDGKLIEKEIPGMNTYKIAEKFAIMLNDTEETKVVCVIESWKLYPNENEKKTNKNNLDSK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2067..2327
                     /locus_tag="Alpa_04"
     CDS             2067..2327
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MKKRQIKTIWIVNSNKFNTFKAFKRWLWYNLHTGEIIEGSQIWEDTIYKTYKIKKTERRLIVETTYDLEQEQKKYFENLQLKLFDK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2379..2609
                     /locus_tag="Alpa_05"
     CDS             2379..2609
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MEHLKTKKMKITGNQWIEIVRAISTMIIAIITTLCTQACTMSLSVSKNNSNSTQKTEQTSTSSVDSTHININPKNY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2613..2852
                     /locus_tag="Alpa_06"
     CDS             2613..2852
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MTNLKEAFIVRPLPESEEFIITIGNHLATAEKFKSRKAAEMRINKTDWNLVSALFFALKEADKWAEKNPELVKQNKEEE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2856..4802
                     /locus_tag="Alpa_07"
     CDS             2856..4802
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MSLQKNIGKNTIGDNNKMSVNLHTYNMSTHDLSTIFRNTQSAGTLVPNLVLLAQKGDTIDIDIESHVLTHPTVGPLFGSFKHENHIFSIPIRLYNSWLHNNRTKIGLNMSDIKLPQLSISINKTKDNPTPDNQWSQINPSCLLAYLGIRGYAYNTTTTSQEVTVQKMAVPLLGYFDIFKNYYANTQEENFYIIGATETITNIKVTQAEGAIYTSTTPDKINIGIASGDSVEITPKNTYEADELIITWFDMSTETTRTGKPTEFGTWSKTSGNWNVVMAPTQVGLLMSITPKNRVQLQDYPLEEIDEMRDKILSTKGNITSIPNNSNIALYDSFGKRLPNGKLNTTSSQYGLCLKTYNSDLLQNWINTEWIDGVNGISEVTAIDVTDGKLTMDALNLQQKVYNMLNRIAVSGGTYRDWLETVFTGGNYMERCETPIFEGGMSTEIVFQEVISNSASGEQPLGTLAGRGYDTGKQKGGHVKIKVTEPSFIMGIGSITPRIDYSQGNEFYNEFLTLDDIHKPALDGIGYQDSLNWQRAWWDDNRMEKNGRLQPSAGKTVAWLNYMTNINRTFGNFAINDNEAFMVLNRNYEMSPSAGTNETKIADLTTYIDPVKYNYIFAETNLDAMNFWVQTKFDIKVRRLISAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4807..5127
                     /locus_tag="Alpa_08"
     CDS             4807..5127
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MYKKTIIPGYTGRMKSVECFEGEQIEEKVRRIVNNNEPITDGAPIIFTEKKDGVRPEYNVRTDRWDIALDAMNKIDMARKAHKENEVKPEDFGNVPDKQNGSPSEN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ggatatagac acattatttc gctcctttcg taatagtttg ttttaccatt tttgaacctg 
       61 tttcatttcc ttcagtatca aacgaagccg acagaatcgc aaatgattta atgatgggaa 
      121 tgaaagacct agaccgaaaa gaccgcgaac ttatcaaaga ttggatatac gaaggtatac 
      181 acgcaggaaa agaaatatcc ggagaaattc tcaattggct aatgagaggt acaccaaaaa 
      241 caatcacaga aataacaagc cgactagaag aaatgtttga tgctaaagga aatgaaacag 
      301 gttcaaaaat ggtaaaacaa actattacga aaggagcgaa ataatgtgtc tatatccgaa 
      361 actcataaga aataaaaaat atttgccaac aaaaaagaat aactataatc cgccaaaaat 
      421 ggtagatcct agaacggcat atataaccgc agcatgcgga aaatgcttag agtgtcggaa 
      481 acaaaagcaa agggaatggc tagtgagaat gagcgaggaa ctaagaacag aaccaaatgc 
      541 ctacttcatg acactaacca tttccgatga aaactacgaa atactaaaaa atacatgcaa 
      601 atcagaggac aagaacacaa tagcaacaaa agcgatacgt cttacattag aacgtatccg 
      661 aaaaaaaact ggaaaatcta taaagcattg gtttattaca gaactaggac acgagaaaac 
      721 agaaagatta catttgcacg ggatagtttg gggaataggt acagaccaac tgataaagga 
      781 aaaatggaac tacggaataa cttataccgg gaactttgta aacgaaaaaa caataaatta 
      841 cataaccaaa tacatgacaa aaatagatga agatcatcca gaattcgttg gaaaagtact 
      901 atgctctaaa ggcataggag caggatacat aaaaagagct gacgcaagca aacacaaata 
      961 cgaaaaagga aaaaccatag aaacttacag gctacgaaac ggagcaaaaa taaatttacc 
     1021 aatatattac agaaataaac tattcacaga agaagaaaga gaactactct ttatcgacaa 
     1081 aatagaaaag ggattcattt acgtactagg aacaaaagtt catagagacg atgaagaata 
     1141 ttatatacaa cttctcgaag agggaagaaa aaaagaagct atactctatg gtgaacataa 
     1201 tcaagactgg gaacaacaaa aatatatcaa cagactacgg aaacaaaaga aaaaacaaga 
     1261 acaagaactc aatcaactag aaatatattg ggcactagaa agagctaaag actacacaca 
     1321 actagaaaca tgtccgttct gatgactgct aaccagccgc caaaggggta attttctcta 
     1381 ggaagtcgct tcgctccgat tttaacgcct gctaacgcaa cggcggcgct ggacggcacg 
     1441 ggacgccgtc tacgcttacg ctgaaaggct tccagcctta cagcgaccta gcggacgaga 
     1501 accacagcaa aaggcagaaa tctgaataat caaacataag ttttatttaa cacctcgggc 
     1561 cgggtggcca agagtgtata gcgggagggt gagatatgcc ttaatccggg agacagctac 
     1621 cttaagacca agataaggga gtgacgtgca cccgacctat ggtcgtggtg tgcgacttcg 
     1681 tcgatatcaa ggtgctagtc gctaaggagg gctatgcgcc ctctattgct ccatcaccgt 
     1741 tcaaacgcca cggaggctta aagatactat tactaataaa ggttaaaagc ttcagacaaa 
     1801 taccagaaaa tttgaagaaa tcagaaaaaa caagtatatt tgcaatgtaa taaaaaacat 
     1861 aagtataaca atttaaaatt taaaagctat ggcagcaaca aaattcacag caatttatgt 
     1921 aaacaatgac ggtaaattaa tcgaaaaaga aataccgggt atgaacacgt acaaaatagc 
     1981 agaaaaattc gctataatgc taaatgacac agaagaaaca aaagtagtat gtgtaatcga 
     2041 atcatggaaa ttatatccta acgaaaatga aaaaaagaca aataaaaaca atttggatag 
     2101 taaatagcaa taaattcaat acatttaaag cgttcaaaag atggctatgg tacaatctcc 
     2161 acacaggaga aataatagaa ggctctcaaa tttgggaaga tacaatttac aaaacttaca 
     2221 aaattaaaaa aacagaaagg aggctaatag tagaaactac ttacgattta gaacaagaac 
     2281 aaaaaaaata cttcgaaaat ttacaattaa aactatttga caaatgatac taggaatatt 
     2341 aacattacta ttgcttataa gcataggaat gatattttat ggaacattta aaaactaaaa 
     2401 aaatgaaaat cacaggtaac caatggatag aaattgtaag agcaatttcc acaatgatta 
     2461 ttgcaatcat tacaacacta tgtacacaag cgtgtacaat gagtttaagc gtgagtaaaa 
     2521 ataactcaaa ctcaacgcaa aaaaccgaac aaacatcaac gtcaagcgtt gacagtactc 
     2581 acattaatat taatcctaaa aactattaaa ttatgacaaa tctaaaagag gcattcatag 
     2641 taagaccact accagaaagt gaagaattca ttattacaat cggaaaccac ttggcaaccg 
     2701 cagaaaaatt caaatcaaga aaagctgcag aaatgcgaat caataaaaca gactggaatc 
     2761 tagtaagtgc actattcttc gcactcaaag aagcggacaa atgggctgaa aaaaatccag 
     2821 aattagtcaa acaaaataaa gaggaggaat aaactatgtc attacaaaaa aacattggta 
     2881 aaaacaccat aggtgacaac aataaaatgt cagtcaacct acacacctat aacatgagta 
     2941 ctcacgactt gagtacaata ttcagaaaca ctcaaagcgc aggaacacta gttccaaacc 
     3001 ttgtactact agctcaaaaa ggtgatacaa tagatatcga catagaaagc catgtactga 
     3061 cacatccaac agtaggacca ctattcggaa gcttcaaaca cgaaaatcac atattcagta 
     3121 tacctatcag actttacaac agttggctgc acaacaaccg aacaaaaatc ggtctaaata 
     3181 tgtcagacat caaattacca caattatcaa taagtatcaa taaaacaaaa gataatccaa 
     3241 caccagataa tcaatggtca caaataaacc caagttgtct actagcatac ttagggatac 
     3301 gaggatatgc atataataca acaacaacaa gccaagaagt aacagttcaa aaaatggctg 
     3361 tgccattact tggatacttt gacatcttca aaaattacta tgccaataca caagaagaaa 
     3421 atttctatat tattggagca accgaaacaa ttacaaatat aaaagtaaca caagcagaag 
     3481 gagctatata cacctcaaca acaccagata aaataaatat aggaattgca agcggagaca 
     3541 gcgttgaaat aactccaaaa aatacatacg aagcagacga acttattata acgtggtttg 
     3601 atatgtcaac agaaacaact aggacaggta aaccaactga attcggaaca tggtctaaaa 
     3661 cttccggaaa ttggaacgta gtaatggcac caacacaagt agggctacta atgtcaatca 
     3721 caccaaaaaa ccgtgtacaa ttacaagatt atcctctaga agagattgac gaaatgcgtg 
     3781 ataaaatatt atcaacaaaa ggaaatatca caagcatacc aaataatagt aatatagctc 
     3841 tatatgattc attcggtaaa agactaccaa acggaaaact aaatacaacc agttcacaat 
     3901 acggactatg cctaaaaaca tataatagtg accttcttca aaactggatc aataccgaat 
     3961 ggatagacgg agtaaacgga attagcgaag tgacagcaat agatgtaaca gacggcaaac 
     4021 ttacaatgga tgccttaaat ttacaacaaa aagtttacaa catgctaaac agaatcgctg 
     4081 taagcggcgg tacatacaga gactggttag aaaccgtatt tacaggaggc aactacatgg 
     4141 aaagatgtga aacacccata ttcgagggtg gtatgtcaac tgaaatcgta ttccaagaag 
     4201 tcataagcaa cagcgcaagc ggagagcaac cactaggaac actagcaggt agaggatatg 
     4261 acacaggtaa acaaaaagga ggtcacgtaa aaatcaaagt aacagaacca tctttcatta 
     4321 tgggcattgg ttcaataact ccaagaatcg attactcaca aggtaatgaa ttttacaacg 
     4381 aattcctaac actggacgat attcacaaac cagcactaga cggaatcgga taccaagatt 
     4441 cactaaactg gcaaagagca tggtgggatg ataaccgcat ggaaaagaac ggtagattac 
     4501 aaccatcagc aggaaaaacg gtcgcttggc ttaactacat gacaaatatc aacagaacgt 
     4561 tcggaaactt tgcaatcaac gataacgagg catttatggt tctcaataga aactatgaga 
     4621 tgagcccatc agcaggaaca aacgagacca aaatagccga cttaacaaca tacatagacc 
     4681 cagtaaaata caactacatt tttgcagaga caaatctaga tgctatgaac ttctgggtac 
     4741 aaacaaagtt tgacattaaa gtgagacgtt taatcagtgc aaaacaaatt ccaaatttat 
     4801 aacattatgt ataaaaaaac aattatacca ggatataccg gacgcatgaa aagcgtagaa 
     4861 tgcttcgagg gtgaacaaat cgaagaaaaa gtaagaagaa tcgttaacaa caacgaacca 
     4921 atcacagatg gagcaccaat catctttaca gaaaaaaaag acggtgtacg ccctgaatac 
     4981 aacgtacgta cggacagatg ggacatagca ctagatgcta tgaataagat agacatggca 
     5041 agaaaggcac ataaagaaaa cgaagtaaaa ccagaagatt tcggaaacgt tcctgataaa 
     5101 caaaacgggt cgcccagtga aaactgatgc gagtcagtag ctgcacgtct agaggggaat 
     5161 tgtaaaaaat tcccctaata aattgaacga cggtacgcat ctactataat atatcaagta 
     5221 tatagaaaag agcttttaga aaaagctcga aaacatgtaa atataaatta ttatggcact 
     5281 aggaggattt tttggagcat tcgccaacat attaggcgga cttgcaacat caagcataca 
     5341 aagatcagat aacgaatatc taatgaatag acaagcggag ctcaacaaag agcaagccga 
     5401 ctattcaaca gacctagcaa aaaattactg ggactacaca aacttcgaaa acagtgtaaa 
     5461 acacttaaaa gaagccggat taaatcctgc attatactat gcaaaaggag gacaaggagg 
     5521 atcaactgga ggaggacaag cccaaggagt aggactacca tctacgacac caacaatggc 
     5581 aagaatacaa gcccaaggaa tgggagcaca attacaaaac gtattatcac aagtagaact 
     5641 caacaaggca acagcaaaaa aaacagaggc agaagccgaa aaaattgcag gagctgacac 
     5701 aaaagtagca gaacgtgaag ccgaaatgct agcatcacaa agcgagttca acagacgaat 
     5761 caccagacta caagacagca tagaaaagct aaccaacgca caagaacaaa aaacggcagc 
     5821 ggaatacttc tatattcaag cacaagaaaa gaaagtttgg gaagaagtac gcgaacaaat 
     5881 tgtaaaatct gacatagcag aagaaacaaa agaagccatg attaaaaaaa cagggctaga 
     5941 aaacttcaat ctgatgcaag caggtataga atcaatcaca aggcaaaaac tcaacagcga 
     6001 gcaaataaac taccttaaag ggcaactagc aatcggatgg gctaacgtgg caataggtga 
     6061 aaaatcagta tcaaacgaag ccgacagaat cgcaaatgat ttaatgatgg gaatgaaaga 
     6121 cctagaccga aaagaccgcg aacttatcaa agattggata tacgaaggta tacacgcagg 
     6181 aaaagaaata tccggagaaa ttctcaattg gctaatgaga ggtacaccaa aaacaatcac 
     6241 agaaataaca a 
//
