FEATURES             Location/Qualifiers
     gene            24..1160
                     /locus_tag="Alpa_01"
     CDS             24..1160
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MSARSQRKANEMNFKINQMNNEFNAKEAEKARAFQLDMWNKENAYNTPSAQRERMEQAGYNAYMNPADAGSASGMSSTTSASASSPAVMQATDFSSLGEVGVRLAQELKLFSEKKGLDIRNFSLKDYLKAQIDKMRGETNWRNLSPEAIRFNIMSGLEAAKIQMEGLKEQWINQKWSNNLLRANVANSLLDAEGKTVINKYLDQQQQADLNVKAAHYEELLLRGQLHSREARESLSRELLNYTRANGQKISNKVAERTANNLIYATNAAHYYEGTYNMYRGRKAKEDAASDFMGNQWQNQLTGEMLNSKRWDNEMQAWREAINSANALLRGSSDVMDSYNTYENGRYERGRPYTSDYEEYEQFDKARGTRRKTRKYKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1438..1611
                     /locus_tag="Alpa_02"
     CDS             1438..1611
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKTKSVKEYWYLVRCHSIGREPEYDLVLKTRSDMKKYVIELRKEWSFVDAGRVDFSI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2124..2648)
                     /locus_tag="Alpa_03"
     CDS             complement(2124..2648)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MLKHIGAIHLRRHKIRNIFIYARIHKHARGELRDNRLRRPCRQPFGHVVINLRQRHFRHVLSVICQSHKITILMIIFYKVTLLCGSVSFFYQTIGALSTVDLYKFSCIFILNHSWMLTFVKILKYSIIHKIFYLGVTATRSGFPAYTVRSPIPNARNRVAINLRFAQMGKYFFL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="2 probable transmembrane helices predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /note="2 probable transmembrane helices predicted by TMHMM"
     gene            2637..3953
                     /locus_tag="Alpa_04"
     CDS             2637..3953
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MLEHLRLLEADRYKALALRYPNFISKFRPFILRSIPRVSKLQNFKDEYFEELVWMLPEIAESLKKKNNTDASGAFPQFKGLLKYVNIRDYQLFAKRLRKYLSKKIGKYEKIHSYVVSEYSPKTFRPHFHILFFFDSDEIAKNFRQAVYQSWRLGRVDTQLAREQANSYVANYLNSVVSIPFVYKAKKSIRPRSRFSNLFGYEEVKKGIQHASDKRSALFDGVPYISNQKFVRYVPSGSHIDRLFPRFTHYDGSFLRRSSQIYEVVQRVLRLFARNEPFKKATPRNVSEFVCWWCEYNFRRGCQIKDFPDYMQEFLHIVRLDGYSFLNWDVPIGKISRFFYRFNRFEAMKGSLRSKLKAVSLFYDYRDYQSLKNQLSLQELVFAELGYSDELFDSFYVKPHIKVLKNAYIDKWKDVNYKEVHYFRVKHKVLNDENNIFL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /note="2 probable transmembrane helices predicted by TMHMM"
     gene            3950..4147
                     /locus_tag="Alpa_05"
     CDS             3950..4147
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MKIAPNQWIEIVKLISTFVIGIITTLFVQSCTLSLSISKNNSNSPQQTEQSSVSSVDSTSINLKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4175..5884
                     /locus_tag="Alpa_06"
     CDS             4175..5884
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="VKNHPRRSGFDLSSKVAFTAKVGELLPVKWCLTMPGDKFSLSEQHFTRTQPVNTSAYTRVREYYDWFWCPLHLLWRNAPEVIAQIQQNVQHASSYDGSVLLGSNMPCVSLSQLSKLLSSLKGKKNYFGFDRSDLAYKILQYLRYGNVQTSSSTSGKNFGTSIPLSDRSYSQDYVFNHALSIFPLLGYKKFCQDYFRFTQWQDSAPYLWNIDYYDAKKSTSILPDTFSTSYLTHNTLIDMEYCNWNKDMFFGVLPDAQYGDASVVDISFGMSGQTVVASPSDISSRYTISNPSDSSTPNLSGSPLVLDVLALRRGEALQRFREISLCTPANYRSQIKAHFGVDVGSELSGMSTYIGGEASSLDISEVVNTNITESNEALIAGKGIGTGQFSDKFYAKDWGILMCIYHSVPLLDYVLTSPDPQLFLSENTSFPVPELDAIGLESIPLSCYSNSSLEIPITNPNVDAASLTMGYLPRYYAWKTSLDYVLGAFTTTEKEWVAPITASLWSKMLLPVTVDGSGINYNFFKVNPSILDPIFLVNADSTWDTDTFLVNAAFDIRVARNLDYDGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ttggttcggt ttttggttct tctatgtctg cccgttctca acggaaggct aatgagatga 
       61 attttaaaat taaccaaatg aacaatgagt ttaatgctaa ggaagccgaa aaagctcgtg 
      121 cttttcagct tgatatgtgg aataaggaga atgcgtataa tactccctct gcccagcgtg 
      181 aacgtatgga acaggcaggt tataatgcat atatgaatcc tgctgatgct ggtagtgctt 
      241 ctggtatgtc ttctaccact tcagcttctg catcttctcc tgctgttatg caggcaaccg 
      301 acttctcctc tcttggagag gtcggtgtac gacttgcgca ggaattgaaa ttattttctg 
      361 aaaagaaagg tcttgatatt cgtaacttca gtcttaagga ttatttgaag gctcagattg 
      421 ataaaatgcg aggtgagact aattggcgta atctttctcc tgaagctatt cgttttaata 
      481 ttatgagtgg tttggaagct gcaaaaattc agatggaagg tttaaaggag cagtggatca 
      541 atcagaagtg gagtaataat ttgcttcgtg ctaatgttgc caattccctt cttgatgctg 
      601 aaggtaagac tgttattaac aaatatcttg accagcagca acaggctgat ttaaatgtta 
      661 aagcggctca ttatgaggaa ttattgctac gcggtcaact tcattcgcgt gaggctagag 
      721 aatctttgtc tcgtgagctt ttgaattaca ctcgtgcaaa tggacaaaag atttctaata 
      781 aggttgcaga acgtactgct aataatctta tttatgccac taatgcagcg cattattatg 
      841 aaggcactta taatatgtat cgcggacgaa aggcgaaaga agatgctgcc tctgatttca 
      901 tgggaaatca atggcaaaat cagcttacgg gcgagatgct taattctaag cgctgggata 
      961 atgaaatgca ggcttggcgt gaagctatta attctgctaa tgctttgctg cgtggttcgt 
     1021 ctgatgttat ggattcttac aatacttatg aaaacggtcg ctatgaacgt ggtcgtcctt 
     1081 atacgtctga ctatgaagaa tatgaacaat ttgataaagc gagaggtaca cgtcgtaaaa 
     1141 ctcgcaaata taaacgttaa atactatttc taactttttt atccatgtaa ttatagctct 
     1201 gttgtgaaac agggctattt ttgtatctat gcgaagcctt ttcttttgtg cgaagcaaat 
     1261 cgggtttcac atctaacccg attcaacccc ctctcgtccg aaatctgcaa aagtgacact 
     1321 aataataatg ctgttttatg ttgtataaca tataaaatag tttgtatgtg tctcaaatag 
     1381 ttcttatctt tgtagcacga aaaaggaaat agtattaatg ttttaaattg ttaaattatg 
     1441 aaaactaaaa gtgtaaaaga gtattggtat cttgttcgtt gtcattcaat tggtagagaa 
     1501 cctgaatatg atttggtttt gaaaactcgt agtgatatga agaagtacgt tatagagctt 
     1561 cgtaaggagt ggtcttttgt tgatgctggt agagttgatt tttcgatttg attttaatgc 
     1621 gctcgggcgg tggaccgctg gcttaaaccg ccccttcgcg catatttatt aaccatatat 
     1681 atttttaaag ttatgtattt attgatgaat gtacaaagta aagatggtgc gaaagcaagt 
     1741 gccccacaac tggtgaacac tgttaaggtg tccttatgcg aacttgtaga gcgtgagctt 
     1801 aagaaacagg aatgcgtagt cattttccag aagatagaag agtgcgacca gtcaggtgtt 
     1861 gaagtcaagt catttggcga gctgtagcac gctaggctgc acacaaaacg cctgtgcaca 
     1921 gcattgcaag aaaataattt tttctttttt ctttccgaca ttgcatcaca caggcgtttt 
     1981 gaataacttc accaagggtt attttattaa aaactgttaa atcttgcgcg tgcgtttacg 
     2041 cgcgtgcatt atttaaccgt ttttgataaa atgttcattg gtggagttag gcaaaacatc 
     2101 ctatctttgc aatttcgtaa agattaaagg aaaaagtatt ttcccatctg cgcgaagcgc 
     2161 aaattaatag caactctgtt gcgtgcgtta gggattggag agcgtaccgt gtacgccgga 
     2221 aagcccgacc gcgtagcggt aacgcccaaa taaaagatct tatggataat agagtattta 
     2281 agtattttaa caaatgtgag catccacgag tgattcaaaa taaatataca ggagaatttg 
     2341 taaaggtcga ctgtggacaa tgcccctatt gtttgataaa aaaagctgac agagccacac 
     2401 aaaagtgtga ctttgtaaaa tataatcata agtattgtta ttttgtgact ttgacatata 
     2461 acactcaata cgtgccgaaa atgtcgttga cgcaaattaa tgactacatg tccgaatggc 
     2521 tgcctgcacg gccgccgaag tcggttgtcg cgcagctctc cgcgtgcatg cttatggatt 
     2581 ctcgcgtaaa taaaaatatt ccggatttta tgtctgcgaa ggtgaatcgc ccctatatgc 
     2641 ttgagcattt gcgcctcctt gaggcggacc gctacaaggc gttagcgctg cgctatccga 
     2701 attttatttc gaagtttcgt ccgtttattt tacgctctat tccccgtgtg tctaagcttc 
     2761 agaattttaa agatgaatat tttgaagagc ttgtttggat gcttcccgaa attgcagaat 
     2821 cattgaaaaa aaagaacaat acagatgcta gtggtgcttt cccacagttt aaaggattgt 
     2881 taaagtatgt taatattcgt gattatcaat tgtttgctaa acgtttaaga aaatatttat 
     2941 caaaaaaaat aggaaaatat gaaaaaattc attcgtacgt tgtatccgag tacagtccaa 
     3001 agacctttcg tccgcatttc catatccttt ttttctttga ctcggatgaa atcgccaaaa 
     3061 attttcgaca ggctgtatat cagagttggc ggcttggtcg tgtcgatacg caacttgcga 
     3121 gggaacaggc taacagttat gttgcaaact atctcaatag cgttgtatct attccctttg 
     3181 tttataaagc caaaaaatcg attcgcccgc gctctagatt ctctaatctc tttggatatg 
     3241 aagaagttaa aaaaggaatc caacatgctt cggacaaaag gtctgcttta tttgatggag 
     3301 tgccttatat ttcgaatcaa aaatttgtcc gatatgttcc ctccgggtcg catatcgata 
     3361 gattattccc ccgatttacc cactatgatg gttcttttct acgaaggtct tctcaaatat 
     3421 atgaagttgt gcaacgcgta ttacgactct ttgcccgaaa cgagcccttt aagaaagcaa 
     3481 ctccgcgaaa tgtatccgaa tttgtatgtt ggtggtgtga gtacaatttc cgacgaggtt 
     3541 gccaaataaa ggattttccc gattatatgc aggaattttt acatattgtt cgtcttgatg 
     3601 gatattcttt tctaaattgg gatgttccta ttggaaaaat ttcccgcttc ttctatcgtt 
     3661 ttaacaggtt tgaggcgatg aaaggttctt tgcgttctaa gcttaaggct gttagtcttt 
     3721 tttatgatta tcgcgattac cagtctttga agaatcaatt gtctcttcag gaacttgttt 
     3781 ttgctgagct tggttatagt gatgagcttt ttgattcttt ttatgttaaa ccgcatataa 
     3841 aagttcttaa aaatgcttat attgataagt ggaaagatgt gaattataaa gaagttcatt 
     3901 attttcgtgt taaacataag gtgttgaacg atgaaaataa tatattttta tgaaaattgc 
     3961 tcctaatcag tggatagaaa ttgttaaatt gatttctaca tttgtaattg gtattattac 
     4021 gactttgttc gtacagtctt gcacgctttc tttgtctatt tcaaagaata attctaattc 
     4081 tccacaacaa accgaacaat cttcggtttc tagtgttgat tctactagta ttaatttaaa 
     4141 acgttaaatt atgggtttgt ttaatctatc gagtgtgaag aaccacccta ggcgttcagg 
     4201 ttttgatctt tcttctaagg ttgctttcac tgctaaagtt ggtgaattgc ttcctgttaa 
     4261 gtggtgtctt acaatgccgg gtgataagtt ttctttgagt gaacaacatt ttactcgtac 
     4321 tcaacctgtt aatacctcgg cttatactcg tgtccgtgag tattatgatt ggttttggtg 
     4381 tcctttacat cttctttggc gcaatgcacc tgaagttatt gcacagattc aacagaatgt 
     4441 acaacatgct tcttcttatg atggtagtgt tttgttgggt tctaatatgc cttgtgtgag 
     4501 tttgtcgcaa ctttctaagc ttctttcttc cttaaaaggc aagaaaaatt attttggttt 
     4561 tgatcgttcg gatttggctt ataagattct tcagtattta cgatatggta atgtgcaaac 
     4621 ttcgtcgtct acttcaggca agaattttgg tacttcaatt cctctttctg ataggtctta 
     4681 ttctcaggat tacgtattta accacgcact tagtattttc ccccttcttg gttataagaa 
     4741 gttttgtcag gactattttc gttttactca atggcaggat tctgcgcctt atctttggaa 
     4801 cattgactat tatgacgcta agaaatctac tagtattttg cctgatactt tttctacttc 
     4861 ttatcttact cataatactt tgatagatat ggagtattgt aattggaata aggatatgtt 
     4921 ttttggtgtc ttgcctgatg cgcaatacgg tgatgcttcg gttgttgata tttcgtttgg 
     4981 tatgtctggt caaactgttg ttgccagtcc gagtgatatc tcttctcggt atactatttc 
     5041 taatccttct gatagctcta cccctaattt gtcgggttct cctcttgttc ttgatgttct 
     5101 tgcacttcgt cgtggtgaag ctctccagcg ttttcgtgag atttcgttgt gtactcctgc 
     5161 taattatcgt tcacagatta aggcgcattt tggtgttgat gttggttccg aattatctgg 
     5221 catgtctact tatataggtg gtgaagcttc ttctttggat atttccgagg ttgttaacac 
     5281 caatattact gaatctaatg aggctttgat agctggtaaa ggtatcggta ctggtcaatt 
     5341 tagcgataaa ttttatgcta aagattgggg tattttgatg tgtatttacc attctgttcc 
     5401 tcttcttgat tatgttttga cgtctccgga tcctcagttg tttcttagtg aaaatacttc 
     5461 tttcccggtt ccagaacttg atgcaattgg tttggagtct attcctttgt cttgttattc 
     5521 taattcttcc ttggaaatac ctatcactaa ccctaatgtt gatgctgctt ctttaactat 
     5581 gggatatctt cctaggtatt atgcttggaa aacttcgtta gattatgtat tgggtgcttt 
     5641 tactactacc gaaaaagagt gggtggctcc tattactgct tctctttggt caaaaatgtt 
     5701 actgcctgta actgttgacg gttcagggat taattataat ttctttaaag ttaatccttc 
     5761 tattcttgat cccatttttt tggttaatgc tgattctact tgggatactg atacgttttt 
     5821 ggttaatgct gcatttgata ttcgtgtagc tcgtaatttg gattatgatg gaatgcctta 
     5881 ttagttatgt ctagaaaagt aaaaaaagag cgttactcct cacgcttgag ttataattat 
     5941 gattatgatt caaaaaagag taaatttgtc gttcgtgata aattggctgt tctttcgtct 
     6001 tacgctgatt cagatggtgt tttacatgtg ttgaatgata tttctttgtt gtttaatcag 
     6061 caacggttag agaatcgtct ttcttctact gaattacgtg aaatgtttaa ccgctattct 
     6121 ccaaataaat caaggtattt ggcgcaattg gatgatgata ctttgttatc tacccttaag 
     6181 tc 
//
