FEATURES             Location/Qualifiers
     gene            complement(876..1169)
                     /locus_tag="Alpa_01"
     CDS             complement(876..1169)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MTEREHRVKDLFQIIRTTTHEEQEEYVIVIGKHLATEARFSTREEAEQFIESKDYDLIWALIAALIDAKDVQEMEAQQEKDVQKVENVIQKQTIKDL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1174..1377)
                     /locus_tag="Alpa_02"
     CDS             complement(1174..1377)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MVTKTKKEIWILILKIVAAIAAAILGVLGVQSCTMSMSIAKNNNNATQQTEQKATSEVKNDSINLKF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1371..1538)
                     /locus_tag="Alpa_03"
     CDS             complement(1371..1538)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKKGESTRVDMVNEDGEIEKIYLVERTDRRVIIKTVKDYKKEQIENENKKQLSLW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1585..1779)
                     /locus_tag="Alpa_04"
     CDS             complement(1585..1779)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MKRFTIYWETPKGDEITTIEEAENLKKALRQVSYFEKKTGYEIVSIEIIKNGKEEETKILLDKQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1781..1954)
                     /locus_tag="Alpa_05"
     CDS             complement(1781..1954)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="VEQIKIKVMRTKYIIELGEKKTKEVEIYVIEGTFAEAYKAAKLFMEKNYYIKSIKEA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2557..3510)
                     /locus_tag="Alpa_06"
     CDS             complement(2557..3510)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MCLYPKLIRNPKYKPTKTNGGNPPVCYDTRLLYIPAACGECYECRKKKQREYQIRLQEEIRHTHGEFLTLTIDNDWYKKLEKEIPKLPKDTIKETKINGEYDNLIATVALRKFLERCRKETGKSIKHWCITELGEENGRIHIHGIFFGENINQVIQKNWKYGFIYIGQYVNERTVMYITKYMFKQCEYNKLFKGKVLSSSGIGSGYVSRFDSSRNKYKEDGNTNETYQFRNGVKVNLPNYYRNKIYSEEEKEKLWIEKLEKGYIWVMGEKVNARNPEEFSKCLEYYQARAIKLGGAKKEDWEKSKYIRRLIRENRRR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3512..4621)
                     /locus_tag="Alpa_07"
     CDS             complement(3512..4621)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MAGMALAAGTAGATFAQTAGQAFASSLPQMAMSAGGGLFGSISAQKQQKRAHAYNLEYMDKQFQQNKEAAAINQAYAKELWDYTSFENQRKHMEAANLNPALMYGMGGATGGSASGAGTVGGGGSLPGTNPVSAGAQAGGMSIQGAMMFSEIAKNFAQASKDEADAKKKEGVETDEARARINLINKQTEVEEEVKQLTAANYFKVLKEQDEVWQRARLLSTQADIAEKTKQAEIESVYVKNWLNTATGLEKLAQIEMHEAEAKQILEETRWIAFDMQTRRITAEAAKKRVGVMVQELEKKYKFQNQENIREWLFGSIDALAKGANSVSNFLPMGRVIKVGEKILDQAFDNKGKSKGWREITKEFTNAIE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="similar to AA sequence:MV_prot:putative.gpH"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4773..5072)
                     /locus_tag="Alpa_08"
     CDS             complement(4773..5072)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MKGVEIKEGETIETKVRRITEEKTPITDSAPIVYTNRTDGVIAGYNIRTDRFEIALSAMDKVNKAKIATRNAKNKVEESDTNKEIESNTDTQAGETSVA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5120..6016)
                     /locus_tag="Alpa_09"
     CDS             complement(5120..6016)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_09"
                     /translation="MLRTKQPMYGLAVKTYQSDIFNNWIQTEWLEGENGINAITAVDTSIGSFTMDTLNLAKKVYNMLNRIAVSDGTYKSWMETVFSAKYVERTETPIYYGGMSQEIIFEEVVSTSATGEEPLGTLAGKGRLAPNKKGGKVVIKIDEPSYIIGICSITPRLDYSQGNNFTMNWETMNDLHKPALDMIGYQDLTMEKAAWWTEEHTSDTEFAQKSIGKTVAWVDYMTNYNKNYGNFASGENENFMTLDRNYNVENPDFTTYIDPAKYNGIFADQSRSSMNFWVQIGVNWKVRRKISAKSIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /inference="similar to AA sequence:INSD:AGT39863.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cagactatcc ccgtacatta ttgatatact accctcaaaa tttttttgtt cgatactcca 
       61 tgtataaaag ctgcttgcac tgtcgaaatt tccttctccc agtagttctc ttactgttcc 
      121 tctttttgat tcgccgttat tgtacatatg tacaatacct tcgtatactt ttaattcttg 
      181 gttttgatta tcccatttgc ttatttgtat gttgtttttc cctactttta aaatcctgaa 
      241 tttctcccaa ttatctacag aagtaccatt tatacttcct tttgatatta tatgatatgt 
      301 gcttagaact ttcccgtttg gctcttgttt gtttgcatag tagtttttcc atatatccca 
      361 atatgctagt agtggtactc cgttcttttt tatgcttatg tctgacgctt taattttacc 
      421 ccatcctctt agccctagat atgctagtag tgcacttgga tttatttgag tccattggtt 
      481 tgaatttgtc gggttatcat ctgtcgacat tccatctact tgtattacag gtaattttac 
      541 ctttgtcata tccagaccaa tccccattgt gttattatgt aataactttt ggtatagcct 
      601 gattggtgct acatatacat ctaattgtaa tttgaagctc ccgtataatg gtcctactgt 
      661 tggatgtgta attaccattg ccgataaatc aatttcatgc gtatcgtcaa tctgtgcata 
      721 ttcgcacagg aatggcacga caggaccgac cgcctgcgta tttttccaaa cgtatgataa 
      781 atcgtgtgta cttctgtaat agttgtttaa ccttacagtc attttgttac cgtctcctac 
      841 ggtattcttt ccgattgctt ttgttattgc cataattata agtctttaat ggtttgtttt 
      901 tgtattacat tctctacttt ttgtacgtct ttttcctgtt gtgcttccat ttcttgaacg 
      961 tcttttgcat caatcaatgc agcaattaat gcccaaatca aatcataatc ttttgattca 
     1021 atgaattgtt ctgcttcttc tcttgttgag aatctcgcct ctgttgctag atgttttccg 
     1081 attacaatta cgtattcttc ttgctcttcg tgagttgttg ttctgataat ttgaaacaaa 
     1141 tctttaactc tgtgttctct ttctgtcata atttcaaaat tttaagttaa tactatcatt 
     1201 ttttacttcg ctagtagctt tttgttctgt ttgctgcgta gcgttgttgt tatttttcgc 
     1261 aatactcatg ctcattgtgc acgattgtac tcctaatact cctaagattg cagcggcgat 
     1321 tgccgcaaca atcttcaata ttaaaatcca aatctctttt tttgtttttg ttaccataaa 
     1381 ctcagttgtt ttttgttttc gttttctatt tgttcttttt tgtaatcttt aaccgtcttt 
     1441 ataattacac gtctatcagt tcgttcgact agatagattt tttctatctc accgtcctcg 
     1501 tttaccatat caacccgtgt tgattctcct ttcttcatat ggaagaatgt gtactctttc 
     1561 attctcccat atgttttgaa ttctttattg tttatccaat aaaatttttg tttcttcctc 
     1621 ctttccattt ttaattattt ctatacttac aatttcataa cctgtttttt tctcaaagta 
     1681 gcttacttgc cttaatgctt ttttcagatt ttctgcttct tcgattgttg taatctcgtc 
     1741 tccttttgga gtttcccaat aaatagtaaa tcttttcatt ttatgcttcc tttattgatt 
     1801 taatataata atttttttcc atgaataatt ttgcggcttt ataagcttct gcaaatgttc 
     1861 cttctattac atagatttct acttcttttg tttttttttc tcctaattcg ataatgtatt 
     1921 ttgttctcat aactttgatt tttatttgtt ccacgtggaa cattgtttgt aaattttttt 
     1981 cttatttttc ttgttttttt ttcacatgac aaagataagc attttatttt tatctgcaaa 
     2041 tttttccttc tctttttttc ttaaaattct taatcttaag agaattttat gtgactaatt 
     2101 taccaatttg tgtaaattat ttcttcattt ttttttctta tccttttctc tttcactccg 
     2161 taattctcgg agtgtgtcac ataattacca cgccgcatgg cgtattctgc atagcgcatt 
     2221 ccgcatggtg tccaatgccg aatggtaagc ctgcgcgacg tttgagcgct cctcgggcac 
     2281 agggcgtgga aacgcccgta gcgactagca ccttagtatc gccggaggcg cacaccacgc 
     2341 cagcttgtct ggcgggtgca ctccagacta caaaccgctt cgagaaggta gctagccttc 
     2401 ggacaaacag gagagtcgat tcccgttata caccgaagaa ggaaaggatg gaaaaccctt 
     2461 agggttttcg gtcgccgtag gtgacaaaaa gcacgccgca cggtacacgc tgcatagcgc 
     2521 attccgcacg gcgtccaatg ccgaagggtt ggcgttttaa cgcctcctat tttcccttat 
     2581 cagtcttctg atatattttg atttttccca atcttctttt tttgctccac ccagctttat 
     2641 ggctcgcgct tgataatatt ctaaacattt actaaattct tctggatttc ttgcgtttac 
     2701 tttttccccc attacccaaa tatagccttt ctctagtttt tctatccata acttctcttt 
     2761 ttcttcttct gaataaattt tattcctgta ataatttgga aggttgactt ttaccccgtt 
     2821 tctgaattgg taagtttcat ttgtatttcc atcttctttg tatttattgc gcgaggaatc 
     2881 gaaacgggaa acgtaccccg acccaatacc gctacttgaa agcactttcc ctttgaataa 
     2941 tttattgtat tcacattgtt tgaacatgta ttttgtaata tacattacag ttctttcgtt 
     3001 tacgtattgt cctatgtata taaatccata tttccaattt ttttgtatta cttgatttat 
     3061 gttttccccg aagaatatcc cgtgtatatg tattcttccg ttttcttctc ctaactctgt 
     3121 tatacaccaa tgttttatag attttcctgt ttcttttctg catctttcta gaaattttct 
     3181 taatgcaact gtagctatta aattgtcata ctctccattt atttttgttt ctttgattgt 
     3241 gtcctttggt aattttggta tttctttttc tagtttctta taccagtcat tatctattgt 
     3301 taatgttaaa aattctccgt gcgtatgtct tatttcctct tgtaatctta tttgatattc 
     3361 tctttgtttc ttttttctgc attcgtaaca ttctccgcat gctgccggga tatatagaag 
     3421 tcttgtatca taacaaacgg ggggatttcc cccgtttgtc tttgttggtt tgtattttgg 
     3481 atttcttatt aattttggat ataaacacat attattctat tgcattagtg aattcttttg 
     3541 tgatttctct ccatcctttc gattttcctt tattgtcgaa ggcttggtct agaatttttt 
     3601 ctccaacttt aattactctt cccattggta agaagttgga tacactgttt gctccttttg 
     3661 ctagagcatc aatacttcca aatagccatt ctcttatatt ttcttgattt tggaatttgt 
     3721 attttttctc tagttcttgc accattactc ctaccctttt ttttgctgct tctgctgtta 
     3781 ttcttcttgt ttgcatatca aacgctatcc atcttgtttc ctctaggatt tgttttgctt 
     3841 ctgcttcatg catttctatt tgtgcaagtt tttcgagtcc tgttgctgta ttgagccaat 
     3901 tttttacgta tacgctttct atttcggctt gttttgtttt ttctgctata tccgcttgtg 
     3961 ttgagaggag tcttgctctt tgccaaactt cgtcttgttc tttgagtacc ttgaagtagt 
     4021 ttgccgctgt taattgcttt acttcttctt ctacttctgt ttgtttgttt atcaagttga 
     4081 ttcttgcacg tgcttcgtct gtttctacgc cctctttctt ctttgcatct gcttcgtctt 
     4141 tgcttgcttg tgcaaagttt ttcgcaattt cgctaaacat catcgctcct tgtattgaca 
     4201 ttccacccgc ttgcgctcct gcacttacag gatttgttcc tggtaaactt cctcctccgc 
     4261 ctactgttcc agcaccggat gcacttccgc ctgttgctcc tcccattccg tacattagtg 
     4321 ccggattcag atttgctgct tccatgtgtt tacgttgatt ttcgaaactt gtatagtccc 
     4381 agagttcttt tgcataagct tgattgattg ctgcggcttc tttgttttgc tggaactgtt 
     4441 tatccatgta ttcgagatta taagcatgtg ctcttttttg ttgcttttgt gctgagatac 
     4501 ttccgaataa ccctccacct gccgacattg ccatttgtgg caatgagctt gcgaatgctt 
     4561 gtccagctgt ttgagcaaat gttgctcctg ctgttcctgc tgctagtgcc attcctgcca 
     4621 taattttaat aatttaagtt tacaattttc gctctttttt aaaagagttc tacaatatac 
     4681 tagatatata atactacatg cgtaccgaag ggactttttt tttacatccc ttcggtcggt 
     4741 tcatctttaa tgtagtgacg gcttcctatg ccttacgcaa cacttgtttc tcctgcttgc 
     4801 gtatcggtat tcgattcaat ttctttattt gtatcggatt cctctacttt gttttttgcg 
     4861 tttcttgttg ctatttttgc tttgtttact ttatccattg ctgatagggc tatttcaaac 
     4921 ctatcggttc gaatattata tcctgctatt actccgtccg ttctatttgt atagacgatt 
     4981 ggagctgagt ctgttattgg agttttctct tctgtaatac gtcttacttt tgtttcgatt 
     5041 gtttcacctt cttttatttc tacacctttc atatttgaaa atggtgtgtg atattttgga 
     5101 tatttcataa tttatttttt tataggttag gaattgattt tgcgcttatt tttcttctta 
     5161 ctttccaatt tacaccgatt tgtacccaaa agttcataga gcttctactt tggtcggcaa 
     5221 atattccgtt gtattttgct gggtctatat aggttgtaaa gtcaggattt tctacattgt 
     5281 aatttctgtc tagtgtcata aagttttcat tttctccact agcgaaattt ccataatttt 
     5341 tgttgtagtt tgtcatgtag tcaacccatg ctactgtttt tcctattgat ttttgggcaa 
     5401 attcggtatc tgacgtgtgt tcctctgtcc accacgctgc tttctccatt gttaaatctt 
     5461 ggtaaccaat catatctaat gcaggtttgt gcaagtcatt cattgtttcc caattcattg 
     5521 taaaattatt cccttgactg tagtcgagtc ttggtgtaat ggagcatatt ccgatgatgt 
     5581 atgaaggttc gtctattttt attactactt ttcctccttt tttatttggt gctaatcttc 
     5641 cttttccggc tagtgttcct aatggttctt cccctgttgc ggatgtactt actacttctt 
     5701 caaaaatgat ttcttgagac atacctccgt agtatatagg agtttcggtt ctttctacat 
     5761 atttcgctga gaatactgtt tccatccaac ttttatatgt tccgtctgat accgcgattc 
     5821 tatttaacat gttgtaaacc ttttttgcta ggtttagggt atccattgtg aaactaccta 
     5881 tactcgtatc tactgctgta attgcattta ttccgttttc tccttctagc cattcggttt 
     5941 gaatccaatt gttaaagatg tcgctttggt atgtttttac cgctagtccg tacattggtt 
     6001 gttttgttct tagcattccg tctttgtctc tttctgaata cgagtatggt ttttcatttg 
     6061 gtactatata tggcgatgtt gaagggaatg ctaatatttt ttctcttact tcgtctattt 
     6121 ttgttattgg aaaatctatt atgttcagac 
//
