FEATURES             Location/Qualifiers
     gene            352..1425
                     /locus_tag="Alpa_01"
     CDS             352..1425
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MAIGASAATLLGSGILGASAIGSTVAGNKGNASIAQQNNAFNEKMLQKQMDYNTQMYQQQLGDQWQFYNDAKQNSWDMFNAANDYNSASAQRERLEAAGLNPYLMMSGGNAGTATAQSSPQASSPSAQGVTPPTATPYSADYSGITQGLGMVLDKIATQPDRDVKSAEADNLRIEGKYKAAKTIAEIVQMRTNAKTQEGRLALDKLIYSIDKDLKSSQMDVNRESIANMQAERKLTNVQTLLVDKQLSWMDAQSKMDLAQKAADIQLKYAQGALTRKQVDHEIAKIAETEVRTSLDIQEQTTNVLKQQGMRQENSFNEATFDNRVKSVKESLWNLMHEADSYGLSKTIGRVIRPLYD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 17 and 18 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:INSD:WP_008775338.1"
                     /inference="similar to AA sequence:INSD:WP_004291034.1"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 20 and 21"
     gene            1950..2180
                     /locus_tag="Alpa_02"
     CDS             1950..2180
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MSAKKGKWIERFNQKNDFDFTVSRVIVTRVAYVRVIKLIPITRFSLFGITVTEAMKIARSFNTLADHVCMITLIED"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_008775332.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2182..2340
                     /locus_tag="Alpa_03"
     CDS             2182..2340
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MEAKGFVYVVVFQNSLDERVAHVYTGTFDRVFKKAKSLCSSSNYFIREIKVV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2547..4040
                     /locus_tag="Alpa_04"
     CDS             2547..4040
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MIKNSFCKCLHPKKIVNPYTNESMVVPCGHCQACMLAKNSRYAFQCDLESYVAKHTLFITLTYANRYIPRATFVDSLERPFGNDLVDKETGEILGPSDMKQEDIDRLLNKFYLFGDVPYLRKTDLQLFFKRLRYYVSKQCPSEKVRYFAVGEYGPVHFRPHYHILLFLQSDEALQVCSENISQAWTLGRIDCQISKGQCSSYVASYVNSSCTIPKVFKLSSVCPFNVHSQKLGQGFLDCQREKIYSSTPQNFVKRSIVLNGKYKEFDVWRSCYAYYFPRCKGFASKSSRERAYSYGIYDTARRLFSSSETTFSLAKEIAFYIKHFHFTDDTYLLDLFGHVSDQKSLLDLSNYFLDRDAMVRPVESDEFNRWVHRIYTELLVSKHFLYFVCTHTTLAERKSKQRMIEEFYSYLDYMHLTTFFESQQEFYESDLIGDDDLCTDQWENSYYPYFYYNVHTNEPFEKTPVYRLYASDVKKLFNDRIKHKKLNDANKIFIDE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /inference="similar to AA sequence:INSD:WP_004291031.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4067..5836
                     /locus_tag="Alpa_05"
     CDS             4067..5836
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MANIMSLKSLRNKTSRNGFDLSSKRNFTAKAGELLPVKTWEVLPGDTFKIDLKSFTRTQPLNTAAFARMREYYDFYFVPYDLLWNKANTSLTQMYDNPQHALDSSPLNVVKLDGSMPFTDLSSISRYLNSLASNSTAVTNKANYFGYNRALCSAKLMECLGYGNLYYYAESTSNTFAKRPLHYNLNVSLFNLLAYQKIYADYYRDSQWERVSPSCFNVDYMPYSTGSSGMMLSFNYSDFYENYSMFDLRYCNWQKDLFHGVVPNQQYGDVASISMSVPVVAGSSAALINSRITSSNSTTTLRFPTDPAIPDATPLLTHPSFSILALRQAEFLQKWKEITQSGNKDYKEQVEKHWNVSPGDGFSEMCTYLGGISSSLDINEVVNQNITGSNAADIAGKGTGVSNGVINFNSQGRYGVVMCIYHCLPLIDYTTDFVSPSVTRVNAADFAIPEFDRVGMQTVPLSYVSNGPLSVLPLSIPNEIGYAPRYIDYKTDIDTSIGAFKTSLKNWVISYDNQSLANQFGYSVETPESPVPNPANSSWNYTLFKVNPNSLNPLFAVEADSSIDTDQFLCSTFFDVKVVRNLDTDGLPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cgtctactga gtaataataa aatatttgag atttaatatt aattttgtct acaaaaaata 
       61 ttacttttat tgactttagt attattttac gtacgtgcgc gtcctttttt tgcgtgcgcg 
      121 tgcgataaaa gatcaggtct gcgcgcgagt gggggcccct ttggggggag ctgtccggct 
      181 ccgttaaaaa aattctgtcc ttaagatctt tctgagtctc agacatggaa aactgaaaaa 
      241 cgggcttgcg atcagtctcc ccttaatttt tttaacctaa accttatctc tgcgtgaaac 
      301 gcaaattaat cgcaactttg ttgcgtattg tttaatttaa tttttattat tatggctatt 
      361 ggtgcaagtg ctgctacatt gcttggttca ggtattcttg gtgcttctgc tattggttct 
      421 actgttgctg gtaataaagg taatgctagt attgctcaac agaataatgc tttcaatgaa 
      481 aagatgttac agaaacagat ggattataat acacagatgt accaacaaca acttggtgat 
      541 cagtggcaat tttataatga tgctaaacag aattcttggg atatgtttaa tgcagcaaat 
      601 gattataatt ctgcttctgc tcaacgtgaa cgtttagaag ctgctggttt gaatccttat 
      661 ttaatgatgt ccggaggaaa tgcaggtact gcgactgctc aatcttctcc tcaggcttca 
      721 tctccttctg ctcaaggtgt aactcctcct actgctactc cgtattctgc agattattct 
      781 ggtattactc aaggtcttgg aatggtattg gataagattg ctactcagcc ggatcgtgat 
      841 gttaagagtg cagaagctga taatcttcgt attgaaggta agtataaggc cgctaagaca 
      901 atcgctgaga ttgtgcaaat gcgtacgaat gctaagacac aagaaggtcg tcttgctctt 
      961 gataagttga tctattctat tgataaggat cttaaatctt ctcagatgga tgttaatcgt 
     1021 gaaagtattg ctaatatgca ggctgagcgt aaattaacga atgtccagac tcttcttgtt 
     1081 gataagcagc tttcttggat ggatgctcag agtaagatgg atcttgccca gaaagctgct 
     1141 gatattcagc ttaagtatgc acaaggtgca ttgactcgta aacaggtaga tcatgagatt 
     1201 gctaagattg ctgagacaga agttcgtact tctcttgaca ttcaggaaca gactactaat 
     1261 gttttgaaac aacagggtat gagacaggaa aactctttta atgaggctac gtttgataac 
     1321 cgtgttaagt ctgttaagga atctctttgg aatcttatgc atgaagctga ttcgtatggc 
     1381 ctttctaaga ctattggtcg tgttattcgt cctctttatg attaatttat tatatttgcg 
     1441 tgattaacca aatattttaa gttatgaaat gtttatattt aggctttttg cctgctggta 
     1501 gtgaatggct gattatttta gctgttttga ttttgtgtgt ttatttgttt ggtaaattta 
     1561 tcaaatcttt atttaagtaa cacccatgtc attttcccga agggtagccg attaatccac 
     1621 tcggctatcc ttttttcttg tcctattata cgaaaaatga caggattaaa atataattac 
     1681 atatgaattg ttatattaaa ggttgtccta tcctctttca tgatctgatt gaaatattcg 
     1741 atttccttcg gaatctttct ccggtttatt tgtaccagta tcagttccta gatatagttg 
     1801 ttaatggtat tcctcgtatg tttatctata tttatcatga ggatttcaat tattatataa 
     1861 catatattag ttatcattaa cttctattat attgtcataa tgataattat tccctttatt 
     1921 tgcagcagaa atttaaaacc tatttgaata tgtctgcgaa aaaaggaaaa tggattgaac 
     1981 gttttaatca gaaaaacgat tttgatttca cggtatcccg tgttattgtt actcgtgttg 
     2041 cttatgtccg tgttattaag ttgattccta ttactaggtt ttctcttttt ggtattactg 
     2101 ttacagaagc tatgaagatc gctagatctt ttaatacgct tgctgatcat gtttgtatga 
     2161 taactttaat tgaagattga tatggaagct aaaggatttg tttacgttgt agtttttcaa 
     2221 aactctcttg atgagcgtgt tgctcatgtt tatacaggta cttttgatcg agtatttaaa 
     2281 aaagcaaagt ctctttgctc ttcttctaat tattttattc gtgaaattaa agtcgtttaa 
     2341 tatgaaactt tctaatcaac aaatctatga catcattaag atcgtcgtta ctgcgattct 
     2401 ttcaatttcc gcaattttgt ttgtgcaatc ctgcacagtg tctttatctg tttcgaagaa 
     2461 caactcgaat agtactcaga aaacggaaca gactactact agttcagtag attctactca 
     2521 tattaacttt gctcctaagt tctgatatga ttaaaaattc tttttgtaag tgtcttcatc 
     2581 ctaagaaaat cgttaatcct tatactaacg aatctatggt tgttccttgt ggtcactgtc 
     2641 aggcatgcat gttggctaaa aactcacgtt atgcctttca gtgtgatctt gaatcttatg 
     2701 ttgctaagca cacattgttt ataactctta cttatgctaa tcgttatatt cctcgtgcta 
     2761 cttttgtaga tagtcttgaa cgcccatttg gtaatgatct tgtagataag gaaacaggtg 
     2821 aaattcttgg tccatctgat atgaaacaag aagatattga tcgtttatta aataagttct 
     2881 atctctttgg agatgtcccc tatcttcgta aaactgattt acaattattt tttaaaagat 
     2941 tacgttatta tgtctcaaaa caatgtccct cggaaaaagt gcgttacttt gctgtcggag 
     3001 aatatggacc cgtccatttc cgcccgcatt atcatatctt attattcctc caatcagacg 
     3061 aagcgttaca ggtatgttca gagaatatat ctcaagcatg gacccttggt cgtatcgact 
     3121 gtcaaatatc caaaggtcag tgttcatcat acgttgcgag ctatgttaat agcagttgca 
     3181 ctatacccaa agtttttaaa cttagttccg tctgtccgtt caacgttcat tctcagaaat 
     3241 tgggtcaagg ctttcttgac tgtcaacgtg agaagatata ctcatctacc cctcagaact 
     3301 ttgttaaaag aagcatcgta ctcaatggca aatataaaga gtttgacgta tggcggtcgt 
     3361 gttacgctta ctactttccc cggtgtaaag gatttgcttc taaatcttca cgtgaacgtg 
     3421 cttactctta tggaatttat gatacagcga ggcgtttatt ctcgtcctca gaaacgacgt 
     3481 tttctcttgc gaaagaaata gctttttata taaaacattt tcattttacg gatgatactt 
     3541 acttacttga tttgtttgga catgtatcag atcagaagtc tttgcttgat ctttctaatt 
     3601 attttcttga tcgtgacgct atggttcgac ctgtagagtc ggatgaattt aatcgttggg 
     3661 ttcatcggat ctatactgag ttacttgtct ctaaacattt cttgtatttt gtttgcactc 
     3721 ataccaccct tgctgaacgt aagtctaaac agcgtatgat tgaggaattc tactcatatc 
     3781 ttgattatat gcaccttact acattctttg aatctcagca ggaattttat gagagtgatt 
     3841 tgattggtga tgatgatctt tgtactgatc aatgggaaaa ttcttattat ccttatttct 
     3901 attataatgt tcatacgaat gaaccttttg agaaaacccc tgtgtatcgt ttgtatgctt 
     3961 cggatgttaa gaaacttttt aatgatcgta ttaagcataa gaaactcaat gatgctaata 
     4021 agatattcat tgacgaataa ttgttaaact tttaatttat taatttatgg ctaatatcat 
     4081 gtctttgaag tctttaagaa ataagacttc tcgaaatggt tttgacctta gttcaaaacg 
     4141 taactttact gcgaaagcag gtgagcttct ccctgttaaa acttgggaag ttcttcccgg 
     4201 tgatacgttt aagattgatc ttaaatcgtt tactcgtact caacctttga atactgctgc 
     4261 atttgctcgt atgagagagt attatgattt ctattttgtt ccttatgatc ttctttggaa 
     4321 taaggcgaat acttctctta ctcagatgta tgacaatcct caacatgcat tggattctag 
     4381 tcctttgaat gttgttaagc ttgatggctc tatgcctttt actgatcttt ctagcatttc 
     4441 tcgttatttg aattctcttg cttctaattc aactgctgtt acgaataagg ctaattattt 
     4501 tggttataat cgtgctcttt gttctgctaa gttaatggaa tgtcttggtt atggtaattt 
     4561 gtattattat gcagaatcta ctagtaatac ttttgctaaa agacctttgc attataactt 
     4621 gaatgtgtct ttgtttaatc ttcttgctta tcagaaaatt tatgctgatt actatcgtga 
     4681 ctctcaatgg gaacgtgtaa gtccttcttg ctttaacgtg gactatatgc cttatagtac 
     4741 tggttcttct ggaatgatgc tttcttttaa ctactctgat ttctatgaga attacagtat 
     4801 gtttgatctt cggtattgta actggcaaaa ggatttattc cacggtgtcg ttcctaatca 
     4861 acagtatggt gatgtggcta gtatttctat gtctgttccg gttgttgctg gtagttctgc 
     4921 tgctttaatt aattctagga taacttcttc gaattctact actactcttc gcttccctac 
     4981 tgatcctgct attcctgatg ctacgcctct tttaactcat ccttctttta gtattcttgc 
     5041 tctccgtcaa gctgaatttt tacagaaatg gaaagaaatt actcagtctg gtaacaagga 
     5101 ttataaagaa caagtagaaa aacattggaa tgtttctcct ggtgacggct tctctgaaat 
     5161 gtgtacttat cttggtggta tttctagttc gctggatatt aatgaagtag tgaatcagaa 
     5221 tattacaggt tctaatgctg ctgatattgc aggaaaaggt actggtgttt ctaatggtgt 
     5281 gatcaatttc aattcacaag gtcgttatgg cgttgtaatg tgtatctatc attgcttgcc 
     5341 tttgattgat tatactactg attttgttag tccgtctgtt actcgtgtta atgctgctga 
     5401 ttttgccatt cccgagtttg atcgagttgg tatgcagaca gtccctttgt cttatgtttc 
     5461 taatggtcct ttgtctgttt tgcctttgtc tattcctaat gagatcggtt acgctcctcg 
     5521 ttatattgat tataagacag atattgatac ttctattggt gcgtttaaaa cgtctttgaa 
     5581 gaattgggtt atttcttatg ataatcaatc gcttgctaat caattcggtt attctgttga 
     5641 aactcctgag tcacctgttc ctaatcctgc taattctagt tggaactata ccttgtttaa 
     5701 ggttaatcct aattctttga atcctctttt tgctgtagaa gctgattcta gtattgatac 
     5761 tgatcagttc ctttgtagta ctttctttga tgtgaaggta gtccgtaatc ttgatacgga 
     5821 tggtttacct tattaatccc ctattgttta actttttaac tttattgtta tgtttgcaaa 
     5881 acgtcgtatt gaaccgtatg taacaccggt taatcctagt ccggtttctg caaaggatat 
     5941 gctttgttct gagtttcgtc aagaatcccc tattgatcaa ttcctgtttg aagaatttga 
     6001 atttgatggt gtgaaaagtg ttcgtttgac ttctgatatt tatatgttgt ttaatcaaca 
     6061 gcgccttgat cggttgtctc gtgaatctct cttgtctcat tttgaatcta tgtcggttaa 
     6121 tgaacctaag tttgg 
//
