FEATURES             Location/Qualifiers
     gene            237..1319
                     /locus_tag="Alpa_01"
     CDS             237..1319
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MAQQGATALQQIPLENLDTIRDKILLTPGDTVFDIGSKISSVAPFNTLTERFNNNKLKTSAPQFGLCLKTYNSDLYQNWINTEWIEGVDGINEASAVDVTDGTLSMDALNLSQKVYNFLNRIAVSGGSYRDWLETVYTGGNYMERCETPMFEGGVSQEIVFQEVISNSATENEPLGTLAGRGVTTGRQKGGHIRIKITEPCYIMCICSITPRIDYGQGNTWDTYLETMDDWHKPALDGIGYQDSLNGERAWWTDYLTADPDLKRTSAGKTVAWINYMTNVNRTFGNFAPGMSESFMVLNRNYSMNNSASPQIEDLTTYIDPVKFNYIFADANIDAMNFWVQTKFEIKARRLISAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1333..1650
                     /locus_tag="Alpa_02"
     CDS             1333..1650
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKYSFPTKNNDRLKSVEIYEGESIETKCARILQNKEPITDTAPIIYTAKEDGVLPAYNIRTDRFDIAMDAYDKITRSSAKKEIAPKPEDFGNVPNKTEGGSPSEN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1813..2850
                     /locus_tag="Alpa_03"
     CDS             1813..2850
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MLGTIIGIGGAIGGAIAKNSAQSSQYQENLALMKYQAKLNQKQAYYSTGLAKDLWDYTNYENSMKHIKAAGLSPGLIYGQGGAGGTTSGAGQASGVGMPSKTGTEAGLQAQGMALQLANMASQVRLNESQADKNEADANKTRGIDTKLQEATIDNLIAQTSNEKVKKGLILGQIRVADAEEELKRNMADWTKDKADETRWNIKSLQKGIDKLTEEINGMKLDNELKERTIDNKVKESSLTLQNLMAEILLKGSQQKVNEEQAKAIPQQILQGWEDLTKKGKALIIQREQMEAYVQDVFNRYDLGKRGLDIEEQKLIKDIVLGMLEIASKGAGAALGAKVGKTGLQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 17 and 18 "
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE.00802"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2943..3884
                     /locus_tag="Alpa_04"
     CDS             2943..3884
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="LRYVTAACGDCYECRKQKQRQWMVRMSEENRQTPNAYFLTLTIDDKSYKQIKQKYNLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIVWGLGNGEKVTNNWKYGITFTGYFVNEKTIKYITKYMLKVDEKHPKFRGKVLCSAGIGAGYLKREDAKRHVYIPGKTNESYRMRNGEKLNLPIYYRNKIFTEEEREKLFLDKIEKGIIYILGIKIDLKTEELRYNGVLASERERCERLYHDNPKEWDKRKYLNRVKKQRQWIESKATMVAEKEKRKEERSEKRLNNDIDLFANLYFNSN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4457..4669
                     /locus_tag="Alpa_05"
     CDS             4457..4669
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MAATKFSVVKENKNTSELLIINYAGEWTYKTALAIAKEANREFNEEGWRIVCVVETKKLYPNENEKTKKD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4749..4901
                     /locus_tag="Alpa_06"
     CDS             4749..4901
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MKKICYELEEDVITKKYIFTKQERRLICEKTYDKDNEDLEKWNQKQLKLF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5013..5162
                     /locus_tag="Alpa_07"
     CDS             5013..5162
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MGRNHSSYIYSNHCYNYDLMCTIVYNEYEYSKKQQQCNATDGTNNNVKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5202..5468
                     /locus_tag="Alpa_08"
     CDS             5202..5468
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MEREFNDMKDVFRVLPTTQEEKEYMIVIGKHLATTEKFPTREAAEEAINSINWNLVTAMIYACKEADEYEKKLKRSAKKIDNNTKKEG"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 aactagccgc agaatacaac ggtaatatcg tagatacaaa aaatataaat ataaaattaa 
       61 aaagtaatga catattcaca tttgaaaatc taatatcaca aaatgaacta ataatctatg 
      121 gaagcgaaaa cagccactac agagaatgga aagcaacaga catagggaca tggaagtcca 
      181 atacagaatt attaatagac agaataagct ccaattcagt ctatatagtc tcaaaaatgg 
      241 cacaacaggg tgcaacagca ttacaacaaa taccattaga aaacctggat acaatcagag 
      301 acaaaatact attaacacca ggagatacag tatttgatat cggaagcaaa ataagcagcg 
      361 tagcaccttt taacacatta acagaaagat tcaacaacaa taaattaaaa acaagcgcgc 
      421 cacaattcgg actatgttta aaaacataca atagtgactt atatcaaaat tggattaata 
      481 cagaatggat agaaggagta gacggaatca atgaagcaag cgctgtagac gtaacagacg 
      541 gtacactatc gatggacgcc ttaaacctat cacaaaaagt atacaacttc ctaaacagaa 
      601 tcgcagtaag tggtgggtca tatcgagact ggctagaaac tgtatacaca ggaggcaatt 
      661 acatggaaag atgcgaaaca ccaatgttcg aaggaggtgt aagccaggaa atcgtattcc 
      721 aagaagtaat aagcaacagc gcgacagaaa atgaaccact aggaacacta gccggacgag 
      781 gtgtaacaac aggacgtcaa aaaggcggac atatccgtat caaaataaca gaaccatgtt 
      841 atattatgtg tatctgttca atcactccac gaatcgacta cggacaggga aacacctggg 
      901 atacatacct agaaacgatg gacgattggc acaagccagc actagacgga atcgggtacc 
      961 aagattcatt aaacggcgaa cgtgcatggt ggacggacta ccttacagca gacccagatt 
     1021 taaaacgtac atccgcaggt aaaacggtag cttggatcaa ctacatgaca aatgtcaaca 
     1081 gaacattcgg aaactttgcg cctgggatga gtgaatcctt tatggtattg aatagaaatt 
     1141 attcaatgaa caattcagca tcaccacaaa tcgaggactt aacaacatac atagacccag 
     1201 taaaattcaa ttacatattc gcagacgcga atatagatgc tatgaacttc tgggtacaaa 
     1261 caaaatttga aattaaagcg agacgtctaa tcagtgcaaa acaaattcct aacttataaa 
     1321 aatgataaca ttatgaaata ttcatttcca acaaaaaata acgatagatt aaaatcagtt 
     1381 gaaatctacg agggtgaaag cattgaaaca aaatgcgcaa gaatcctaca gaacaaggag 
     1441 ccaatcacag atacggcacc tatcatctat acagcaaaag aagatggtgt actacctgca 
     1501 tataatatcc gaacggacag attcgatata gcaatggacg cttatgacaa aattacaaga 
     1561 agttcagcaa agaaagagat agctccaaaa ccggaagatt tcggaaatgt accaaataag 
     1621 acagaaggag gctcacctag tgaaaactaa actgtttaaa gaggtatctt taaagccttg 
     1681 taggtaacag gcacttcgga gtatttgtaa agacaaaata ctttaaaata cacgaaagta 
     1741 cgcacctaca atctattatc aagtaatatg aatatcgctt tgaaacatca aagcgcgaaa 
     1801 atgtaaataa ttatgcttgg aacaattatc ggtataggtg gtgcaattgg aggtgcaatt 
     1861 gctaagaaca gcgcccaaag tagtcaatac caagaaaatt tagctttaat gaaataccag 
     1921 gctaaattga atcaaaaaca ggcttattac agcacaggat tagcaaagga tttatgggat 
     1981 tacaccaact acgaaaattc aatgaaacat ataaaagctg caggtcttag tcctgggctt 
     2041 atatatggac aaggcggagc aggcggaaca actagcggag caggtcaagc aagcggagta 
     2101 ggaatgccaa gtaaaacagg aacagaagca ggactacaag cgcaaggaat ggcactacag 
     2161 ttagcaaata tggcaagtca agtaaggcta aatgaaagcc aagcagataa aaatgaagcc 
     2221 gatgccaaca aaacaagagg tatagatact aaattacaag aagctacaat tgataaccta 
     2281 atagcccaga cttcaaatga aaaagtaaaa aaagggctca tattgggaca aatcagagtg 
     2341 gctgacgccg aagaggaact taaacgaaac atggccgatt ggacaaaaga caaagccgat 
     2401 gaaacacgct ggaatatcaa aagcctacaa aaaggaattg ataaactaac cgaagaaatc 
     2461 aacggaatga aactcgacaa cgagctaaaa gaaaggacaa ttgacaacaa agtgaaagaa 
     2521 tcctctctaa cactccaaaa tctgatggct gaaatactac tcaagggaag tcagcaaaaa 
     2581 gtcaacgaag agcaagcaaa ggctattcct caacaaattc tacaaggatg ggaagacctt 
     2641 accaagaaag gtaaggcact aatcatccaa agagaacaga tggaagccta tgtacaagat 
     2701 gtattcaata gatatgacct gggcaaaaga ggtctggata ttgaagaaca aaaactcatc 
     2761 aaagacattg tacttggaat gctagaaata gcttcgaaag gagccggagc agcactaggg 
     2821 gcaaaagtag gcaaaacagg tcttcaataa ctatgtgtct atatcctaaa ctcataccaa 
     2881 acaagcggta cctaccaaca aagaaaaatg gcgggatacc gcctgtttgt cctgacgaaa 
     2941 ggttgcgtta tgtaacagca gcatgtgggg actgttatga atgcaggaaa caaaagcaaa 
     3001 gacaatggat ggtaagaatg tcagaagaaa acagacaaac accaaacgcc tactttctga 
     3061 cactgacaat cgatgataaa tcctacaagc aaatcaaaca aaaatacaac ttaaaagata 
     3121 ataacgacat tgcaacaaaa gccataaggt tatgtctaga aagagtacga aaattaaccg 
     3181 gaaaatccgt aaaacattgg tttattacag aactaggaca cgagaaaaca gaaagattac 
     3241 atctacatgg gatagtatgg ggcttgggaa atggagagaa agtaacaaac aactggaaat 
     3301 acggaatcac atttaccgga tatttcgtga atgaaaaaac tatcaaatac attacaaaat 
     3361 acatgctaaa ggtagacgaa aaacatccaa aattcagagg gaaagtatta tgctctgccg 
     3421 gaataggagc aggatacctc aaacgagaag atgctaaaag acatgtatat atcccaggca 
     3481 aaacaaacga atcgtaccgg atgagaaacg gcgaaaaact caatctacct atctattata 
     3541 gaaacaaaat attcacagaa gaagaacgtg aaaaactatt cctagacaaa atagaaaaag 
     3601 gaataatcta tatactagga atcaaaatag acctcaaaac agaagaatta agatacaacg 
     3661 gcgtactcgc aagcgaacga gaacgttgcg aaagactata tcacgataat ccgaaagaat 
     3721 gggataaaag aaaatatctc aacagggtta aaaagcaaag acaatggata gaatctaaag 
     3781 cgactatggt cgccgagaag gaaaaaagaa aagaagaaag aagtgaaaaa cgattaaata 
     3841 acgacattga tttattcgcc aatctatatt tcaactcaaa ttaaaagctg cgctatggca 
     3901 tgtccaacgg ggctccgtgt taacatcaca cgggtctgta tttaccacct caaggccggg 
     3961 gggcccaggg tgtataacgg gagggtgaga tacaccttta tccgagagac agcgacctta 
     4021 agaccaggat aaggcgtgac gggcacccga cctacggtcg tggtgtgcgg ctccgccgat 
     4081 actatggtgc tagtcgctaa ggagaggctc ggcgcctctc tgttgctcta atcctcgttc 
     4141 aaacgccacg aaggcttaaa gatactattg ccaataatag ttaaatactt caaataaata 
     4201 tctgaaaatc tgcaaaaatc aaaaaaatca attatatttg caatgttaat aagaaaggag 
     4261 gtgaaaaatg aaaacttaga gtttctttta taacaaagaa aaaaaggaat ttattagatt 
     4321 ttgtaaaaca aaaaaagaaa atcatgaata cggaacttat aaaactatta gtttacaaag 
     4381 attactttat agacttttat tatcttgatt acgagacatt tataaataaa attaaagaac 
     4441 ttaaagacaa ataattatgg cagcaacaaa attttcagta gtaaaagaga acaaaaatac 
     4501 aagtgaatta ctcattatca actatgcggg cgaatggact tacaaaacag cactcgcaat 
     4561 cgcaaaagaa gcaaaccgag aatttaacga ggaaggatgg agaatcgtat gcgtagttga 
     4621 gacaaaaaaa ttatatccca acgaaaatga aaaaaccaaa aaagattaga aaatatgaaa 
     4681 cagacggata tattttcaat acatttcagg agttaaaaaa ttatgtgtac tttcacacat 
     4741 caataaaaat gaagaaaata tgttatgaac tagaagaaga tgttattaca aaaaaataca 
     4801 tcttcacaaa acaagaaagg aggttaatat gtgaaaaaac ttatgacaaa gacaatgaag 
     4861 atttagaaaa atggaatcaa aaacaactta aattatttta aacatgccta gagaagtatt 
     4921 cggaatagta atattactat taataatcgc cttcataggc ggaagttatt tatacattaa 
     4981 aaatggagac ttatgaaaat taccggtaat caatgggtcg aaatcattcg agctatatct 
     5041 acagcaatca ttgctataat tacgacctta tgtgtacaat cgtgtacaat gagtatgagt 
     5101 atagcaaaaa acaacaacaa tgcaacgcaa cagacggaac aaacaacaac gtcaagcgtt 
     5161 gatagtacaa aaattaatat taatcctaaa aactattaaa aatggaaaga gaatttaacg 
     5221 acatgaaaga tgtattcaga gtattaccaa caactcaaga agaaaaagaa tacatgattg 
     5281 taattggcaa acatttggca acaactgaaa agtttccaac acgtgaagca gcagaagaag 
     5341 caatcaattc tataaattgg aatctagtta cagcaatgat atatgcatgt aaagaagcag 
     5401 acgaatacga aaagaaactc aaacgttctg caaaaaagat tgacaacaac actaaaaagg 
     5461 agggctaaat tatggcaata ataaaaaata ttggtaaaaa taccataggt gacaataata 
     5521 aaatgtcggt aaatctgcat gagtataaaa tgtctacaca cgacttatca acaattgtaa 
     5581 gaaacacaca gagcccggga acattagtac cgaatctatg tttagtaggg caaaaaggag 
     5641 atacaattga tattgacatc gacgcaagtg tactaacaca tccaacaaca ggaccgttat 
     5701 tcgggtcatt caaattagaa caccatatct atacagcacc agtacgtttg tacaacagtt 
     5761 ggttacacaa caaccgtaca aaaatcggtc tgaatatggc acaggtaaaa ttacctcaaa 
     5821 taaccgtagc gttaaacaaa gcatacgata acgtatataa agaatacgaa aaggaattcc 
     5881 aatggacgca agtaaatcca agttgtctac tagcatactt aggaatcaga ggttttgcaa 
     5941 acttacaagg tgtaaacaca aaaacagcaa caaaaaacgc cgtaccaatt cttacatact 
     6001 atgacatatt taaaaaattt cta 
//
