FEATURES             Location/Qualifiers
     gene            357..512
                     /locus_tag="Alpa_01"
     CDS             357..512
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MLDKDLILVVGLAELVAVNEYLRERGDEQVCSVLDGIVKGFRLILCNSKQK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            516..659
                     /locus_tag="Alpa_02"
     CDS             516..659
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MEMPEVVIALPNGVKIACTAKSAKYLIIGLGLESLLKDGEVEKPADK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            676..828
                     /locus_tag="Alpa_03"
     CDS             676..828
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="VSAVVAALSAFFLTSCSTSHYVAQSVSSFVQGDTTTTIIKYEQVGSIKKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 32 and 33 "
                     /inference="protein motif:SignalP:4.0"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 18 and 19"
     gene            835..1017
                     /locus_tag="Alpa_04"
     CDS             835..1017
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MEIQKEYIIVVNGRPYFSVVDVEHLSAVIDDAKARFGADSKIEVVMQTTEPYAPGKDNGN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:WP_022044633.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1037..1309
                     /locus_tag="Alpa_05"
     CDS             1037..1309
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MASNSWRGLEALIAWSDSVTWKTKAGKMPVLVIQYDHFDDFARWKDWVSHVSFPYAYTRAIDDVVTVEVPVEPFFRFTTAPKKWHVNNLR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1306..2247
                     /locus_tag="Alpa_06"
     CDS             1306..2247
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="VIVNRRYKDMTNTEIVDYAKTYYGCFWPPDYYLEVPCGYCHSCQKSYNNQYRIRLLYELRKYPPGTCLFVTLTFDDDNLKKFSKDTNKAVRLFLDRLRKDYGKQIRHWFVCEFGTLYGRPHYHGILFDVPQTLIDGYSPDVPGHHPLLASRWKYGFVFVGYVSDETCSYITKYVTKSINGDKVRPRIISSFGIGSNYFDTEESTLHKLGGQRYQPFMVLNGFQQAMPRYYYNKIFSDVDKQNIVLDRFVNPPVEFSWQGQKFSSKLERDEMRRSTLNQNITSGLTPALPLPHTERVSSFDRFKENMDKNKEFK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:KDS61825.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2247..4067
                     /locus_tag="Alpa_07"
     CDS             2247..4067
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MSKYRIPSDYENQTPRAVHRRVASAYGTIHPGLAVPVHHRHLNVGERIRGRIDSLLQSQPMLGPLMNGYKLITIATFTPDSAIYGWMRNGRRYEPDEYTKFGKVYFPLAGSNIGNYIDPAFQIARRVRRLTFGLDLDANRAKIYESWVSDELNGTGDNGQPTHIGRGGLWDWLGIAPGAVCPNLGAKLSSVAGIRGQLYPPSFKFNAAPFFAYFLSHYYYIANMQENYMYFTRGVGEMQKVRPDGQQESLYRPFFSDVFTSFKPNEFLLYLDTLAYRTREGAQINAMDLKVEGLPINCVQAMACAGIQGYGGLLSVPYSPDLFSNIIKQGSSPSIEITVENDQPNKPDAGFYVAVPELRLKTKLQNWMDRLFVSGGRVGDVFRTLWGAKSSAPYVNKPDFLGVWQASVNPSNVRAMANGSASGEDANLGQLAACIDRYCDFSGHSGIDYYAKEPGTFMLIAMLVPEPAYHQGLHPDLASVSFGDDFNPELNGIGFQSVPRHRFTMMPRGLDDITAHQEKNPWLGYAGTGVTIDPNTASVGEEVAWSWLRTDYPRLHGDFAQNGNYQYWVLARPFTSYFPDAGTGFYGDAESYSTYINPLDWQYVFD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4184..4513
                     /locus_tag="Alpa_08"
     CDS             4184..4513
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MYKKKKITCPSCFSKDSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPTVGKLDLMDMASTMASESEARALKDGAKEPNSD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4617..5621
                     /locus_tag="Alpa_09"
     CDS             4617..5621
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_09"
                     /translation="MSILAGLGAAAASFAMKEGHNAIAQSRNEKNMALEHDYWKRRVNQLEEMNKPSRQVAKWRSAGIAPQAVFGNSPGGAGIATDASTPNSQTPMGSSDFNFVTTIAERQRMKNEKAIADATVNKLNAEAEKLRGDTKDPNVTKDSQRLEFDWNLVKKQREQVQLAVDEINKEFQRAINEADVQIKHGLYSETLAKIDKLIADKDVSEEMKQNLQKQRDLIESQISATQAQTDLIKAQTSATQAQTETENALRDGRIKLTEREANKILADIGLSEARSLNEYESLIKAMTGTQPASSLWGYIDRLIARGDSRLGGYENASDLREKLARALVRYIKAD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 15 and 16 "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.HMPREF9141.0987"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_022044636.1"
                     /inference="similar to AA sequence:INSD:WP_018697176.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ccttatagtg aagtatcttg atgacccaag atacggaacg tttccgatat gtaacgtgcg 
       61 tacgtgtgct ttcacgcgtg cgcgcgaaat tcatattcgg atataattgt aaaattttca 
      121 cttttttttg gacttgtaaa tattatttgt atatttgcgc tgtagttctc tactactcgt 
      181 tctttgacgt cttgccacct tttattaacc ctcttttctg tggcaagata ctcccctatc 
      241 ctattgctta acttactggc aatcagtact attaccatta tgttaaatta taggagagta 
      301 tagccacttg atacactgtg cataagcact tttgaaacgg aatttataat aatattatgt 
      361 tagacaagga tcttatttta gtggttggtc ttgcagagct tgttgccgtt aacgaatatc 
      421 ttcgtgaacg tggtgatgag caagtttgta gtgtgcttga tggtattgtt aaaggttttc 
      481 ggcttatatt gtgtaattca aaacaaaagt aaattatgga aatgcccgaa gttgtaatcg 
      541 ctcttcctaa tggagttaag attgcgtgta ctgctaaatc tgctaagtat cttattattg 
      601 gtcttggttt ggaatcactt ctgaaagatg gagaagttga aaaacctgct gacaagtaag 
      661 aaattttgga cgcttgtgag tgcggttgtt gccgctcttt cggcgttttt tcttacgtct 
      721 tgttctacct ctcactatgt tgctcaaagt gtttccagct ttgtgcaagg tgatactact 
      781 actactatta ttaaatacga gcaagttggc tctataaaga aaaggtaatt tattatggaa 
      841 attcagaaag agtatattat tgttgtgaat ggtcgtcctt atttttcggt tgtagatgtt 
      901 gagcatcttt ctgctgtgat tgatgacgct aaggcacgtt tcggtgctga ttcgaaaatc 
      961 gaagtcgtta tgcagactac cgaaccgtat gcgcccggaa aggataacgg taactaagga 
     1021 catttttgag cgtcttatgg cttcgaattc gtggcgaggt cttgaagcgt taatagcttg 
     1081 gtccgattct gtgacttgga aaaccaaagc gggcaaaatg cccgttttgg ttattcagta 
     1141 tgatcacttt gacgacttcg cccgctggaa agactgggtg tcgcacgtct cctttcctta 
     1201 tgcttatact cgtgctattg atgatgttgt tactgtagag gtccccgttg aacctttttt 
     1261 tcggtttaca actgcaccta agaagtggca tgtgaacaac ctaaggtgat tgtcaatcgt 
     1321 cgttacaagg acatgacaaa tactgaaatt gttgattatg ctaagactta ttacggttgc 
     1381 ttttggccac cggattatta tttagaggtt ccttgcggtt attgtcattc ttgtcagaag 
     1441 tcgtataata atcaatatcg tatacgtctt ttgtatgagc ttcgcaaata tccgcccggc 
     1501 acttgtctgt ttgttaccct aacctttgat gacgataact taaagaagtt ttcgaaagac 
     1561 acaaataagg ctgtcagatt gtttttggat cgtcttcgta aagattatgg taaacaaatt 
     1621 cggcattggt ttgtttgtga gtttggtact ctttatggtc gcccgcatta tcatggtatt 
     1681 ctttttgatg ttcctcaaac tttgatagat ggatatagcc cggatgtgcc cggtcatcat 
     1741 cctctactgg cttctcgttg gaaatacggt tttgttttcg ttggatatgt ttctgacgaa 
     1801 acgtgttcgt atattaccaa atatgttacg aagtctatca atggtgataa ggtgcgcccg 
     1861 cgtattattt cttcttttgg tattggttct aattattttg ataccgaaga gtctactttg 
     1921 cataaattag gtggccagcg ttaccagcct tttatggttt tgaatggttt tcagcaggct 
     1981 atgccacggt attattataa taaaatattt tctgatgttg ataagcaaaa tattgttctt 
     2041 gatcgttttg ttaatcctcc tgttgagttt agctggcaag gtcagaagtt tagtagtaaa 
     2101 ctggaacgtg atgaaatgcg tcgttctact ttgaatcaaa atattacttc cggtcttact 
     2161 cctgcacttc ccctacccca tactgaacgt gtttcttctt ttgatagatt taaggaaaac 
     2221 atggataaaa acaaagaatt taaataatgt caaagtatcg tattccgtct gattatgaaa 
     2281 atcagacccc gcgcgctgtg catcgtcgtg ttgcttctgc ttacggcacc attcatccgg 
     2341 gtttggctgt tccggttcat catcgtcatt tgaatgttgg tgaacgtatt cgcggtcgta 
     2401 ttgattcgct tttgcagtct cagcctatgt taggccctct tatgaatggt tataagctta 
     2461 ttactattgc tacttttacc ccggattccg ctatttatgg atggatgcgc aacggtcgtc 
     2521 gttatgaacc tgatgaatac acaaagttcg gtaaggttta ttttccgctt gctggttcta 
     2581 atataggtaa ttatatagat cctgcatttc agattgctcg tcgtgttcgt cgtcttactt 
     2641 ttggtttgga tttggatgcg aatcgggcga aaatttatga atcttgggtt tctgatgaat 
     2701 taaatggtac tggcgataac ggccagccta ctcatattgg tcgtggaggt ctttgggatt 
     2761 ggcttggtat tgcccccggt gcagtttgtc ctaatttagg tgcaaagcta tcgtccgtcg 
     2821 ccggtattcg tggtcagctt tatcctccct cttttaaatt taatgctgct ccgttcttcg 
     2881 cttatttcct ttcgcattat tattatattg ctaacatgca ggaaaattat atgtatttta 
     2941 ctcgtggtgt tggtgaaatg cagaaagttc gtccggatgg tcagcaagaa tcattgtatc 
     3001 gtcctttctt ctctgatgtt tttacgtctt ttaaacctaa cgaatttctt ttgtacttag 
     3061 atactttagc ttaccggaca cgtgagggag cgcaaatcaa tgctatggac ctcaaggtag 
     3121 aaggtcttcc tattaattgt gtccaagcta tggcttgtgc tggcattcaa ggttatggcg 
     3181 gccttttgtc tgttccttat tcccccgatt tgtttagtaa tattattaag caaggttctt 
     3241 ccccctctat tgaaattacg gttgaaaatg accaacccaa taaacctgat gctggttttt 
     3301 acgttgctgt tccggagctt cgtttgaaga caaaacttca gaattggatg gatcgtcttt 
     3361 ttgtttccgg tggtcgtgtt ggcgatgttt ttcgcactct ttggggtgct aaatcttcgg 
     3421 cgccttatgt taataagccc gattttcttg gtgtttggca ggcttctgta aatccgtcga 
     3481 acgttcgtgc tatggctaac ggttcggctt ccggtgagga tgcaaatttg ggtcagcttg 
     3541 cggcttgtat tgataggtat tgcgattttt cgggacattc tggtattgat tattatgcta 
     3601 aggaacccgg tacctttatg cttattgcta tgcttgttcc cgaacccgcg tatcaccaag 
     3661 gtttgcaccc ggatttggct tccgtttcct ttggtgatga ttttaatccg gaattgaatg 
     3721 gcattggttt tcagtcggtt ccacggcatc gttttactat gatgccccgc ggtctggatg 
     3781 atattacagc gcatcaggaa aaaaatcctt ggttgggtta tgctggtact ggtgttacta 
     3841 tagatcctaa cacggcttcc gttggtgagg aggtggcgtg gtcatggctt cgtaccgatt 
     3901 atccccgttt gcacggtgat tttgcgcaaa atggtaatta ccagtactgg gttttggctc 
     3961 ggccttttac ttcttatttt ccggatgctg gtaccggctt ttatggtgac gctgaaagct 
     4021 attcgactta tattaatcct cttgactggc agtatgtttt tgattgatca aactttaatg 
     4081 gctggtaatt ttgcgtatta cggttatttt gatcttaagg ttacttcgtc actttcagcg 
     4141 aattatatgc cgtatcttgg tcgttagtta aatatcgatt gttatgtata agaaaaagaa 
     4201 aataacttgt ccttcttgtt tctcaaaaga ttcttcttcg cttcgtgatt ataatccttt 
     4261 tgtggacaag gttgttgttg cgcatcctat gtcttactat cttaacggtg gtgttgattt 
     4321 acaaggtatt tctactcgta aacctttgcc cgctgctttt gatgatgctg aatctattgc 
     4381 gtccggtgat gtcaatgtat ttaccgatcc tacagttggt aaacttgatt tgatggatat 
     4441 ggcgtctact atggcttccg aatctgaggc tcgtgctttg aaggatggag ctaaggaacc 
     4501 gaattccgac taattgaaca atttctttgg gtaggggccg caatatactt gatatatatt 
     4561 gcggagtgcg gaaagcacgt cccctaccct attttttaaa gaaaaattga acaactatga 
     4621 gtattttagc tggattaggc gccgccgccg cttcctttgc tatgaaagaa ggtcataacg 
     4681 caatcgctca gtctcgtaat gagaaaaata tggctttgga gcatgattat tggaaacggc 
     4741 gcgttaatca acttgaagag atgaataaac cttctcgtca agttgctaaa tggcgttccg 
     4801 ctggtatagc tcctcaagct gtctttggta attctcccgg cggtgctggt attgctactg 
     4861 atgcttcaac tccgaattct caaactccta tgggttccag tgattttaat tttgttacta 
     4921 ctattgccga gcgtcagcgt atgaaaaatg agaaggcaat tgctgatgct actgttaata 
     4981 agctgaacgc cgaagctgag aaacttcgtg gcgatacgaa agatccgaat gttaccaagg 
     5041 attcgcaacg tcttgaattc gattggaatc ttgttaagaa acagcgtgag caggttcagc 
     5101 ttgctgttga tgaaattaac aaagagttcc agcgtgctat taatgaagct gatgtgcaaa 
     5161 ttaaacatgg tctttattct gaaaccttgg cgaaaatcga caagttaatt gctgacaagg 
     5221 atgtttcgga ggaaatgaag cagaatttgc agaaacagcg tgatttgatt gaatcgcaga 
     5281 tttctgctac tcaagcccag actgatctta ttaaggccca gacttccgct acgcaggctc 
     5341 aaactgaaac ggagaacgct cttcgtgatg gtcgtattaa gcttacagaa cgcgaagcga 
     5401 ataagattct tgccgatatt ggtttgtcgg aggctcgttc gcttaatgag tatgaatcgc 
     5461 ttattaaggc tatgaccgga actcaacccg catcttctct ttggggttat attgatcgtc 
     5521 tgattgcccg cggtgattct cgtctcggtg gttatgagaa tgcgagcgat ttgcgtgaaa 
     5581 aacttgctcg tgctcttgtt agatacataa aggctgatta attttgtgta tgtttttatt 
     5641 tttgggacat atcggttttt gtgaactttt agttctcgct ttttttgcgt tcattttctg 
     5701 gtttatctgg aaatgcgttt gtaagttgtc ttctcgtaag tagtgtaagg ctcggaattt 
     5761 tccgggcctt tttttttaca tgcgtaactt acaaaatgta atttacaaat gtaaattatt 
     5821 gatctttaat gcgttatcat ctttttatag ccgcgttacg ttctgatcgt tcggccgcct 
     5881 ttgctttggg ttcactcaat aacccgaagc aatggcgtgc cggactgctt cgtttaatta 
     5941 actt 
//
