FEATURES             Location/Qualifiers
     gene            18..617
                     /locus_tag="Alpa_01"
     CDS             18..617
                     /product="capsid family protein [Parabacteroides distasonis str. 3999B T(B) 4]"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="VSNSATENEPLGTLAGRGINAGKQKGGKIKIRATEPGYMMCITSITPRIDYSQGNDFDSDWISLDDMHKPALDGIGYQDSVNSGRAWWDDVYINNTGKAAKRTAGKTVAWIDYMTNVNRTYGNFAAGMSEAFMVLNRNYEMKYEAGTNPKISDLTTYIDPVKYNYIFADTSIDAMNFWVQIKFDITARRLMSAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:KDS63784.1"
                     /inference="similar to AA sequence:INSD:KDS75238.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            621..929
                     /locus_tag="Alpa_02"
     CDS             621..929
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MKTAKLIKCTGRMHSVETFEGETIEEKVNRIVNNGEPIKDGAPIIYTEKKDGVLPEYDIRTDRWDIAIEAMDKVNMDRMAKRENKPDVTEVPDKKDGSPSEN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1078..2133
                     /locus_tag="Alpa_03"
     CDS             1078..2133
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MLGGIIAAATSAIGSQIKGIEARDAEDRAFAKQKELMDKQYELNNKMAEQNQQRAKYMWDYTNFENQKQHLLNANLSPGLFYGGTGAGGQTSGGQGSGVGLGSETGVGFGIQEKALGLQLAGMASQVALNQSQANKNNAEANKIKGADTKLAESQTSLNNAMENLTNTKENTEAANYNLALQEQSKVFEEARTMANQNDIIEATKQTQIDTVIQNYYLNSLTAFEKIAGIELKGKEAAYISKQIEWYSFEAITKRMSAEAMQKMAESAAERVKNDFEIAGKKIDQEQEKILQTWIFESVKSLCNVAQTTGDIISLFKKPIQKVGEKVFEEMFDAKGKSKGFKEVIKDFKMK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 14 and 15 "
                     /inference="similar to AA sequence:MV_prot:putative.gpH"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2258..3133
                     /locus_tag="Alpa_04"
     CDS             2258..3133
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MECRQQKQRQWLVRMSEELRQTPNAYFMTLTISDENYEILKNICKSEDPNTIATKAIRLMLERIRKKTGKSIKHWFITELGHEKTERLHLHGIVWGIGIDKLIEEKWNYGITFTGYFVNEQTINYITKYMTKEDLDHPGFIGKVLCSKGIGMGYAKREDAKNHVYKKGKTIEYYRLRNGSKINLPIYYRNQLFTEEEREMLFLDKIEKGIIYVMGQKVHRDNEEEYIALLEEGRRAEQRLYGNHVQEWEKEKYLNRLRKQKKKQERELEQLELYWAFEKAKTYTQIESCPF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3623..3832
                     /locus_tag="Alpa_05"
     CDS             3623..3832
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MAETKFTAIYVNNEGKIIEREIPGMNTYKIAKKFAKILNDPEETKLVCVVESWKLYPNENEKTEKGQKN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3892..4326
                     /locus_tag="Alpa_06"
     CDS             3892..4326
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MAATKFSVITTGNNPSFHMSIKELPAECTYKIAVTIAKAIVPKDERIIAVVESWKLYPNENEKTEKNKKYEVDGFIFNTLQEVKHYVWYQTPQKSVKTSYELCEDVITKKYIIRKLERRLICEKIYDSEEEELKIWRQKQLKLW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4350..4499
                     /locus_tag="Alpa_07"
     CDS             4350..4499
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MDRNHSSYQYGNHCYNYDLMCTIVYNEPIRKQKQSKFNAKNRTNNNVKR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4539..4787
                     /locus_tag="Alpa_08"
     CDS             4539..4787
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MANLKEAFKIRLLPESEEYVITIGSHLATEEKFKSEKAAQMQINKTNWDLVSALVYALKEADEWAEKNPELINQTKEAKEGK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 tcgtattcca agaagtggtg agtaacagcg ctacagaaaa cgagccttta ggaacacttg 
       61 cagggcgagg aataaacgca ggcaaacaaa aaggaggaaa aatcaaaata agagcaacag 
      121 aaccagggta tatgatgtgt atcacaagca ttacaccacg aatcgactac tcacaaggaa 
      181 atgacttcga cagcgactgg atatcactag acgacatgca taaacctgca ttagacggaa 
      241 tcggatacca agacagcgta aacagcggac gtgcatggtg ggacgacgta tacataaaca 
      301 acacaggcaa agccgcaaaa cgcaccgcag ggaaaaccgt tgcttggata gactatatga 
      361 caaatgtaaa caggacatac ggaaactttg cggcaggaat gagtgaggcg tttatggtac 
      421 ttaacagaaa ttatgaaatg aagtatgaag caggaacaaa tccgaaaata tcagacctga 
      481 caacctacat agaccctgta aaatataact acatttttgc agataccagt atagacgcta 
      541 tgaacttctg ggtacaaatt aaatttgaca ttacagcgag aagattaatg agtgcaaaac 
      601 aaattccaaa cttgtaaaat atgaaaacag caaaattaat aaaatgtacc ggacgaatgc 
      661 attcggtaga aacattcgaa ggcgaaacaa tcgaagagaa agtaaatcga attgtgaaca 
      721 acggagaacc aataaaagac ggagcaccaa tcatctacac agaaaaaaaa gacggtgttc 
      781 taccagaata tgacatacgt actgacagat gggatatagc tattgaagct atggacaaag 
      841 taaatatgga cagaatggca aaacgtgaaa acaagccaga tgtaacagaa gtaccagata 
      901 aaaaagacgg atcaccatct gaaaactaat cggcaaagcc gagccactgt atgcgaaacg 
      961 atacattgac ttttgtaaaa agtaatgtat gacagtacgc atacagtata ttatatcgag 
     1021 tatatagtat aacgctttta aaaaagcgcg aaaattgtaa aattaaatta ttgaattatg 
     1081 ttaggaggaa taatagcagc agcaacatcg gcaataggca gccaaatcaa aggaatagaa 
     1141 gccagagatg cggaagatag agcctttgca aaacaaaaag aactcatgga taaacaatat 
     1201 gagcttaata acaaaatggc agagcaaaat cagcaacgtg ccaaatacat gtgggactac 
     1261 acaaacttcg aaaaccaaaa acaacacttg ctaaacgcaa atttaagccc aggcttattc 
     1321 tacggaggaa caggtgcagg tggacaaaca agcggaggac aaggaagcgg agtaggattg 
     1381 ggaagcgaaa caggtgtagg atttggaata caagaaaaag cattagggct acaactagcg 
     1441 ggaatggcat cacaagtagc attaaatcaa agccaagcaa ataaaaacaa cgcagaagct 
     1501 aacaaaatca aaggagcgga cacaaagcta gcagaatctc aaacgagtct taataatgca 
     1561 atggaaaatc taacaaacac gaaagaaaac acagaggcag ccaactataa cctagcttta 
     1621 caagaacaaa gcaaagtatt cgaggaagct agaacaatgg caaatcaaaa cgatattata 
     1681 gaagctacaa aacaaacgca aatagacacg gtaatacaaa actactacct aaacagttta 
     1741 acagcatttg aaaaaatagc aggtatagaa ctcaaaggga aagaggcggc atatatatca 
     1801 aaacaaatcg aatggtattc attcgaggca ataacaaaaa gaatgagcgc agaagctatg 
     1861 caaaaaatgg cagaaagtgc ggcagaaaga gtaaaaaacg actttgaaat agcaggcaaa 
     1921 aaaatagacc aagagcaaga aaaaatacta caaacctgga tattcgaaag cgtaaaatct 
     1981 ctatgtaatg tagcacaaac cacaggagac ataataagcc tgtttaaaaa acctatacaa 
     2041 aaagtaggag aaaaagtatt tgaagaaatg tttgatgcaa aaggcaaatc aaaaggcttt 
     2101 aaagaagtaa tcaaagattt taaaatgaag taatatgtgt ctatatccta aactcataaa 
     2161 aaaccggagg tatataccaa acaaaaaaaa taacggcaga cctccggtct gtcctgatga 
     2221 aagattactc tacgtaaccg cagcatgtgg caaatgcatg gaatgtagac aacaaaaaca 
     2281 aagacaatgg ctagtaagaa tgagtgaaga attaagacaa actccaaacg cttacttcat 
     2341 gacattaaca atatcagatg aaaattacga aatactaaaa aatatatgca aatcagaaga 
     2401 cccaaacaca atagcgacaa aagctattcg ccttatgtta gaacgtatcc gaaaaaaaac 
     2461 tgggaaatct ataaagcact ggtttattac agagctaggg cacgagaaaa cagaaagatt 
     2521 acatttgcac gggatagtat ggggaatagg tatagacaaa ttgatagaag agaaatggaa 
     2581 ttacggaata acctttacag gttacttcgt gaacgaacaa acaattaact atatcacaaa 
     2641 atacatgaca aaagaagatt tagatcatcc aggatttatc gggaaagtat tatgctcaaa 
     2701 aggtatagga atgggatatg ccaaaagaga agatgcaaaa aaccatgtat acaaaaaagg 
     2761 caaaacaata gaatactaca gactaagaaa cggaagtaaa ataaatctac caatctacta 
     2821 tagaaatcaa ctatttacag aagaagaaag agaaatgcta tttctagaca aaatagaaaa 
     2881 aggaatcatc tatgtaatgg gtcaaaaagt gcatagggat aacgaggaag aatatatagc 
     2941 tctactagaa gagggaagac gagcagaaca acgattatac ggcaaccatg tacaagaatg 
     3001 ggaaaaagaa aaatatctca acagactacg aaaacaaaag aaaaaacaag aacgagaact 
     3061 tgaacaacta gaactctact gggctttcga aaaggcaaaa acctacactc aaatcgaatc 
     3121 atgtccattt taaaaagtgt atagcgggag gaaaagacag caaaagacca aaaggcagct 
     3181 gccttaagac caggataaga aatggcgtgc actcacccta acgggcgtag tgtgcgcctt 
     3241 cagcgatatc aaggtactag acgttaagga gggctatgcg ccctctattg caccatcagc 
     3301 gttcaaacgg cacgcagcct cgccaagcaa aagtgttaaa taaatgttaa agataacaag 
     3361 aaaatttgca gaatcaaaaa aaacacgtat atttgtagtg taataaaaaa caaggaggta 
     3421 aatatgaaaa cattaaaaca actattagaa aattatgtag taattgagat tagattcaaa 
     3481 gaatacaaaa gaatactcat aatactaaaa ggcaaagata gcaaaaaaca aaagtcaaaa 
     3541 tggatagaca aaaattattt caaaagaaat tatcctaata catcaaaatt cttcaattta 
     3601 taaataatta aaaccaaaaa ttatggcaga aacaaaattt acagcaatct acgttaataa 
     3661 cgaaggaaaa ataatcgaaa gagaaattcc aggtatgaat acgtataaaa tagcaaaaaa 
     3721 attcgctaaa atactaaatg atccggaaga aaccaaacta gtatgtgtag tagaatcatg 
     3781 gaaattatat cctaacgaaa atgaaaaaac cgaaaaagga caaaaaaatt aataaacaac 
     3841 gaatattggg tatattcaat aatatgtata aactaaaaaa tcattttaac tatggcagca 
     3901 acaaaatttt cagtaatcac aacaggaaac aaccctagtt ttcatatgtc gataaaagaa 
     3961 ttaccagcag aatgtacata caaaatagcg gtaacaatcg caaaagcaat cgtaccgaaa 
     4021 gacgaacgta taatagcagt ggtagaatca tggaaattat atcctaacga aaatgaaaaa 
     4081 accgaaaaaa acaaaaaata tgaagtagat ggctttatat ttaatacctt acaagaggta 
     4141 aaacactacg tgtggtatca aacaccacaa aaatcagtaa aaacaagtta cgaactatgt 
     4201 gaagatgtaa ttacaaaaaa atacatcatc cgaaaattag aaaggaggtt aatatgtgaa 
     4261 aaaatttatg acagcgaaga agaagagtta aaaatttgga gacaaaaaca attaaaacta 
     4321 tggtaaatta tgaaaatcac agggcaacaa tggatagaaa tcattcgagc tatcagtacg 
     4381 gcaatcattg ctataattac gaccttatgt gtacaatcgt gtacaatgag cctatccgta 
     4441 agcaaaaaca atcaaaattc aacgcaaaaa accgaacaaa caacaacgtc aagcgttgac 
     4501 agtactcaca ttaatattaa tcctaaaaac tattaatcat ggcgaatcta aaagaagcat 
     4561 tcaaaatcag actgttacca gaatcagaag aatatgttat aacaatcggt agtcacctgg 
     4621 caacagaaga aaaattcaaa agcgaaaaag cagctcaaat gcaaattaac aaaaccaatt 
     4681 gggatctagt aagcgcacta gtatatgcct taaaagaggc ggatgaatgg gctgaaaaaa 
     4741 atccagaact aattaaccaa actaaagaag ccaaggaggg caagtaatat gtcaatacaa 
     4801 aaaaatatcg gtaaaaatac aataggtgat aataaaaaaa tggaagtaga tttgaaaacc 
     4861 tataacagat ctacacacaa cctatcaaca gtaatcagaa atacacaaag tgctggaaca 
     4921 cttgtaccaa catgtacaat agtgatgcaa aaagatgata cattcgaaat caatatagaa 
     4981 agtagcgtac taacacatcc aacaacggga ccattatacg gaagcttcaa actagaaaat 
     5041 catgtattct ttataccgtt cagattatac aatagctggt tacataacaa caggttagga 
     5101 atcggactag acatgtcaca aataaagtta ccacaactac acgtaacttt aaataaacta 
     5161 cacgaccagc cgggagaaga cgagaaacaa tggtcacaaa taaacccgag ttgcctacta 
     5221 tcatacttag gaatcaaagg atacggtgga atgaataaca acgcaaccgc accaacagca 
     5281 acaaaaaacg cagtaaaggt gttagggtat tgggatatat tcaaaaactt ctatgctaac 
     5341 aaacaggaag aaaattacta catgatcggt agtaatgatc ctctatcaat cacgatcaac 
     5401 aacactcaaa taacagaccc taacaacata cctcaaaacc agggtaccgt aaatgcgaag 
     5461 tcaatcatcg aaatagatga tgtattaagt atctacaaca attcaaacgt aacgttatgg 
     5521 gtaacacagc aaataggaca tagtccagtg aaaatgactg cagacgaaat aggtacaact 
     5581 tcaacagaca atcaaaaatt tataatacaa aacttaaaaa taccagccgg aaatacttgg 
     5641 tggatacgta caatacaatc aacacaacaa caggcactag taccttttcc tctagatgaa 
     5701 tttgatacac taagag 
//
