FEATURES             Location/Qualifiers
     gene            165..1169
                     /locus_tag="Alpa_01"
     CDS             165..1169
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MNRPWDYFTQRIMVPCGRCEECLRQQRNDWYVRLERETKYQKSLHRNSVFVTITIAPEYYDSALLNPSSFIRMWFERIRRCFGHSIKHAVFQEFGMHPEQGNEPRLHFHGVLWDVSYSYNAIREAVKDLGFVWISSITDKRLRYVVKYVGKSVYMDDSSAVFAKSLPITVGKLNTNLYDFLQNRKYRRKFVSPGVGDYLGDFKAPGVTSGLWSYTDYRTGVVYRYRIPRYYDKYLSQDALFFRKISTAWTYACVFGSSLALGFLREVAQRVLRPSSFSRIVKGGFSRLVKLREFLSKVKFSQRFIAVVPDVIDFWVDCFGVNSSNPFFNKIVYG"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1162..3105
                     /locus_tag="Alpa_02"
     CDS             1162..3105
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MGKQPFISHSVNGYSRYDMPESKAFSITPGIIYPVRIQFVNARDRVTLHQGIDIRSNPLGVPSFNPYVLRLHRFWVPLQLYHPELRVNSSKFDMNNLTYNFIPGVVDCAGAGSYTSCMYPRSGTAAFFSQVMPFNHRAALPNSLMSWLRIANSPIFCYSGKPLPVSTCLLKTAPKFLSVNADTYLGYWDIVRNYYSYSSWGVFSFAHPGTYRPVFYTTPTSSVTKVEYRSQASYFWQRYGNLEFLDHYFETMFYPRDRKTPDDRDELSWNRSDLFVEILRSDLFNEDTIAASPDFTNLVQLFPQGINCRVPAHPYDVQEPKVDWNNGTGTDVNIPSKVYFSATLNVPFLAAHPMAVCPSSPDRFSRLMPPGDSNSDVDFTGVKTIPQLAVATRLQEYKDLIGASGSRYSDWLYTFFASKIEHVDRPKLLFSSSVMVNSQVVLNQAGQSGFEGGESAALGQMGGSISFNTVLGREQTYYFKEPGYIFDMMTIRPVYFWTGIRPDYLEYRGPDYFNPIYNDIGYQDVPLWRLGYGWKADTVSSLSVAKEPCYNEFRSSYDEVLGSLQATLTPKASTPLQSYWVQQRDFYLIGLSSNPNEVSPSMLFTNLNTVNNPFASDMEDNFFVNMSYKVVVKNLINKSFATRLSSR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022044635.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3107..3400
                     /locus_tag="Alpa_03"
     CDS             3107..3400
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MLEYMIEDLPEYRSRGERIMSVLNGSGSVEVLPGRPDVQASDSDFRKGEDYDPPLDFDPNSFSRIDKFDGLESGQGVIDDFLERQRSSSSAKSEKDD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3675..3875
                     /locus_tag="Alpa_04"
     CDS             3675..3875
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MVSYCCFVMEKVPFYRKKSFWTLLISILTALSVYFAASCSRKVFYRSSGIHCDTVEVDVRSNLKLP"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3877..5142
                     /locus_tag="Alpa_05"
     CDS             3877..5142
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MPAAPFLALMGQSLGMNAASSAGSSAGAGIADALFGGISARRNWKYKQKEMALQQQYALEQMSKSAEFQLAHDKQMFDYQNSYNDPAAVLERNFSAGLNPAAVLGQSGVGVSATIPTSSGGAPSGHGPVASGSGGGLAALAGNPSAYADVQLKDAQQERERSAASLNDAEADWYRSQTLDKDLRERLMKAQAGLAEAGITESASRASLNAAITLSYSIDNELKDAAFGYNLEMIKANLGKAKEEYYQLKARTGYIDELIEKELQLLTVRAIYLKSSASNQEQLARVNELTADDLENWFDVNWNTQVDVPIIDEKGKVERIVRMTGKEIRKEYMKLDLQDFQYDMYTNRWALRSEKNRFGYSIVNTAVNGAISAAGHVVGAKVLSTAPPVQRIEDVTEDLTSSPDGSGWTKHTTTTSRQFRR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 33 and 34 "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            5205..5612
                     /locus_tag="Alpa_06"
     CDS             5205..5612
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MLSNVISEDTQKSSVSGSDSIISVLISNYPLANGGYLVSFGHDEPDGSFKNYDPVYSLDFESSKLSKFLEFSSIFLPRGCYYLPEMELAGFIRSLSSDVSFFEMKLLPASAQLQGLLLVKVDEESLSKYEQEEED"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cgtttttcga acttatgagc aagcttctga ttgtctccgt tttttgttag aaaattatcc 
       61 cggtatttat tttgatataa aggatgtgtc tttctcccat ttggataaga aatcgagctt 
      121 atagttcacg gactattagt ttgacagata ggaatgtttt gttgatgaat cgtccttggg 
      181 attattttac tcaacgtatt atggtcccct gtggtcgttg tgaggagtgt ttgcggcagc 
      241 agcgcaatga ttggtatgtt cgtttggagc gtgaaaccaa gtatcagaaa agtttgcatc 
      301 gtaactctgt ctttgttacg attacgatag ccccggagta ttacgatagt gcattgctga 
      361 atccttcttc ttttatccgc atgtggtttg agcgtattcg ccgctgtttt ggtcattcca 
      421 ttaaacatgc tgtttttcaa gaatttggaa tgcatcctga gcaaggcaat gagcctcgtc 
      481 ttcatttcca tggcgttctt tgggatgttt cttattctta taatgctatt cgtgaagcag 
      541 ttaaggattt aggttttgtt tggatttcat ctattacgga taagcgtctt cggtatgttg 
      601 tcaagtatgt cggtaagtct gtttatatgg atgatagttc tgctgttttt gcgaagtctc 
      661 ttcctattac tgtaggtaaa ttaaatacta atctttatga ctttcttcag aatcgtaaat 
      721 atcgtcgtaa atttgtttcg ccaggtgttg gtgattattt gggcgatttt aaagctcccg 
      781 gtgttacttc tggtctatgg tcttacacag attataggac cggtgttgtt tatcgttacc 
      841 gtatccctcg ctactacgat aagtatcttt ctcaagatgc gctatttttt cgtaagattt 
      901 ctactgcttg gacctatgct tgtgttttcg gtagttcttt ggctcttggc tttcttcgtg 
      961 aagttgctca acgggtcctt cgtccctctt ccttttcccg tatcgttaaa ggaggttttt 
     1021 cgcgccttgt gaagcttcgg gagtttttga gtaaggttaa gttttcgcag cggtttattg 
     1081 ctgtagttcc tgatgttatt gatttttggg tagattgttt tggtgttaat tcttctaatc 
     1141 ctttttttaa taaaatagtt tatgggtaag cagcctttta tttctcattc cgtgaacggt 
     1201 tattctcggt atgatatgcc tgagagtaag gctttttcta ttacgcctgg tattatttat 
     1261 ccggtgcgta ttcagtttgt caatgcacgt gatcgagtta ctttgcatca aggtattgat 
     1321 atccgttcaa atcctttggg tgttccatcg ttcaacccct atgtgcttcg gttgcatcgg 
     1381 ttctgggttc ctttgcagtt gtatcatccg gaattgcgtg ttaattcgtc taagttcgat 
     1441 atgaataatt tgacgtataa ctttattcct ggtgttgtag attgtgcagg tgctggaagt 
     1501 tatacttctt gtatgtatcc gcgttccggt actgctgctt ttttcagtca ggtcatgccg 
     1561 tttaatcatc gtgctgcact tcctaatagt ctgatgtctt ggcttcgtat tgctaatagt 
     1621 ccgatttttt gttattctgg taaacctttg cctgttagta catgtttgct taagacggcg 
     1681 cctaagtttc tttctgtgaa tgcagatact tatttaggtt attgggatat tgttcgcaat 
     1741 tattattcgt attcttcttg gggtgttttt tcttttgctc atcccggaac ttatcggcct 
     1801 gttttttata ctactcctac ctcttctgtg acgaaggttg agtatcgttc gcaagcttct 
     1861 tatttttggc agcgttatgg taatttagag tttttggacc attattttga aacgatgttt 
     1921 tatccgaggg ataggaaaac tcctgatgat agagatgagt tgtcttggaa ccgttctgat 
     1981 ttgtttgtag aaattcttcg ttctgatttg tttaatgagg atactattgc tgcttctccg 
     2041 gattttacga atttggtgca gttgtttccg cagggtatta attgtagagt tccggctcat 
     2101 ccttatgatg ttcaggaacc taaggttgat tggaataatg gtacaggtac cgatgttaat 
     2161 attccttcta aagtttattt ttctgccacg ttgaacgttc cttttttggc agcgcatcct 
     2221 atggctgtgt gtccgagttc tcccgaccgt ttcagtcgtc tcatgccgcc gggtgattct 
     2281 aattctgatg ttgattttac aggtgtaaag actatcccgc agcttgctgt tgcgacacgt 
     2341 ttgcaggagt ataaagacct tatcggtgct tccggttctc gttattctga ttggctttat 
     2401 acgttctttg cttctaagat tgaacatgtg gaccgtccga agcttctttt tagttcttcc 
     2461 gttatggtta acagccaggt tgttttgaat caggctggcc agtctggttt tgaaggtggt 
     2521 gaatctgctg cacttggcca gatgggtggt tccatttcgt ttaatactgt gcttggacgc 
     2581 gaacaaactt attattttaa ggagcccggt tatatctttg atatgatgac tattcgacct 
     2641 gtttattttt ggacgggtat acgtcctgat tatttggagt atcgtggtcc cgattatttt 
     2701 aatccgattt ataatgatat tggttatcaa gatgttcctt tatggcgtct tggttatggt 
     2761 tggaaggctg atactgtttc tagtttgtca gtagctaaag agccttgtta taatgaattc 
     2821 cggtcttctt atgatgaggt tttaggttct ttgcaggcta ctttaactcc taaggcttct 
     2881 actccgcttc agtcttattg ggtgcagcag cgtgattttt atctgatagg tttgtcgtca 
     2941 aatccgaatg aggttagtcc ttctatgctt tttactaatc tgaatactgt taataatcct 
     3001 tttgcatcgg atatggagga taattttttt gttaatatgt cgtacaaagt agttgttaag 
     3061 aatcttatta ataagtcttt tgcaactcgt ttatctagtc gttgatatgt tggagtatat 
     3121 gattgaagac cttccggaat ataggtctcg tggcgagcgg attatgtctg ttttgaatgg 
     3181 ttccggctct gtagaggttt tgcctggtcg tcctgatgtt caggcgtcgg attctgattt 
     3241 tcgtaaaggt gaagattatg atcctccgtt ggattttgac ccgaattcgt tttcacggat 
     3301 tgataagttt gatggtttgg agagtggaca gggtgttatt gatgactttc ttgagcgtca 
     3361 gcgttcgtct tcgagcgcta agtcggagaa agatgattaa tgaggtttag ggttctcgaa 
     3421 gggagtattt aggtattccc ttcggtccct tgtccacttt cctgcctcgc accgcaggta 
     3481 gcgtttagca ctttggtaat cagcacttta tgtcgacgga gtcggcgtgc tgcccgtata 
     3541 aatttattat ttttaaaaga aaattacata tccctttact agatgatata tgatatgtgc 
     3601 gcggaccgat tttgatgttt gctttgaaca tcaaatttgg atatcaaatt gcggttttga 
     3661 tagcgtattt tcttatggtt tcttattgtt gttttgttat ggaaaaagta ccgttttatc 
     3721 gtaagaaaag tttttggaca ctgttgattt ccattcttac tgctttatct gtttattttg 
     3781 cagcttcatg ttctcggaag gttttttatc gttcttctgg tattcattgc gatacggttg 
     3841 aagttgatgt tcggtctaat ttaaagcttc cgtagtatgc ctgctgctcc ttttcttgct 
     3901 ctgatgggcc agtcgttagg catgaatgca gccagttctg caggttcttc tgctggtgcc 
     3961 ggtattgctg atgctttgtt cggtggtatt tctgctcgtc gtaattggaa gtataagcag 
     4021 aaggaaatgg cattgcagca gcagtatgcc ctcgaacaaa tgtctaagtc tgcggaattt 
     4081 cagttggccc atgacaagca gatgtttgat tatcagaatt cgtataatga tcctgctgct 
     4141 gttcttgagc gtaatttttc tgctggtttg aatcctgctg ctgttcttgg ccagtctgga 
     4201 gttggtgttt ctgctactat tcctacttcc agtggtggtg ctccctctgg acatggtcct 
     4261 gttgcttctg gttccggtgg tggtcttgct gctctggctg ggaatccttc tgcgtatgcg 
     4321 gatgttcagt tgaaagatgc tcagcaggag cgtgagcgtt cggcggcttc tcttaatgat 
     4381 gctgaggctg attggtatag gtcccagact ttggataaag atttgcgtga acgtcttatg 
     4441 aaggctcaag caggacttgc tgaagcagga atcactgaat ctgcttcgcg tgcaagtttg 
     4501 aatgctgcca taactttgtc ctattctatt gataatgagt tgaaagatgc tgctttcggt 
     4561 tataatcttg agatgattaa ggctaatctt ggtaaggcta aggaggagta ttaccagctt 
     4621 aaggctcgta ctggttatat tgatgagttg attgaaaaag aattgcagtt gttgactgtc 
     4681 cgggctattt atttgaagtc ttctgcttct aatcaggagc agttggcccg tgtgaatgaa 
     4741 ttgacggcag atgatttgga gaactggttt gatgtgaatt ggaatacgca ggttgatgtt 
     4801 cctattatcg acgagaaagg aaaggttgag cgtattgtca ggatgaccgg caaggaaatt 
     4861 cgcaaagaat atatgaaact tgatttgcag gattttcaat atgatatgta tactaatcgt 
     4921 tgggctcttc gctctgagaa gaatcgattc ggctatagta ttgttaatac tgctgttaat 
     4981 ggagctattt ctgctgctgg acatgttgtc ggagccaaag ttctttctac agctcctcct 
     5041 gtgcaaagaa ttgaggatgt tactgaggat ttaacttcta gtcctgatgg ttcaggttgg 
     5101 actaagcata ctactacaac tagtcgtcaa tttcgtcgtt aaaaatttgt aatttaattt 
     5161 ttttatgttt atctttgcct ttgaacttta aatcttattc tattatgtta tcaaatgtta 
     5221 ttagtgagga cacgcagaag tcttctgttt ctggctctga ttcgattatt tcggtgttga 
     5281 tttcaaatta tcctcttgct aatggaggtt atttggtttc ctttggtcat gatgaacctg 
     5341 atggctcttt taagaactat gacccggttt attctttgga ttttgaatcc tctaagcttt 
     5401 ctaaattttt ggaattcagc tctattttct tgcctagagg atgttattat ttgcctgaga 
     5461 tggagcttgc aggtttcatt cgttctttgt cttcggatgt atcttttttt gaaatgaagc 
     5521 ttttgcctgc ttctgctcag ttgcaaggtt tgctcttggt taaagttgat gaagaaagtt 
     5581 tgtctaagta tgagcaggaa gaagaagact agaggtaaag gaggttcacg aatcgttgta 
     5641 cgtcctttag gaggaaaggt tctatgagtt ttg 
//
