FEATURES             Location/Qualifiers
     gene            complement(200..2245)
                     /locus_tag="Alpa_01"
     CDS             complement(200..2245)
                     /product="capsid family protein [Parabacteroides distasonis str. 3999B T(B) 4]"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MKKTLGGDRIRSESKMEVYLPNFGRSSHNVGKIIRTSQACGTIVPYWCQIGLDGTTFYIDITTKVKTLPTTGPVFGSFKHQIDVFVIPIRLYIAALHNNALGVGLNMSKVLLPQFRVSTAVASIYENDTNRGQVNPSSLLSYLGIKGFGYSKTNSHIRTFPAIFNLAYWDIFKNYYANKQEENAYVITGINHIWKKISAGDGVAWNREWTENSSEAYPLNPSSQAPSFIKLEFEEKISPEEVNEIQFLTNDPEKPSQKINKLTKLGNAFIFERTDPEAMGLKKPDNPKRATNIYVYQVKKPIYLAYNMNIAGNNYLTMPDNKKIKLTPFPLKNIDQERNKILAAPSTSAYVVEGATMPYGAATKTIGLPSYDRREKYNSSNAWYSQAGLAVKTYLSDRFNNWLNTEWIDGTTGGINSITAVDVSDGKLTMDALILQKKIFNMLNRVAITDGTYQAWREATYGIRSATLPESPIFCGGMQSEIAFDEIVSNSATEEEPLGTLAGRGVATMYKSGRGLKIKCTEPSMIMALGSITPRIDYSQGNKWWTRLQNMDDFHKPTLDAIGFQELIAEEAAAWTTEATDDHELVYQSLGKQPSWIEYTTDVNETYGEFAAGMPLAFMCLNRVYEENSDHTIGNASTYIDPTIYNSIFAESRLSSQNFWVQVAFDVTARRVMSAKQIPNL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:KDS63784.1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2249..2554)
                     /locus_tag="Alpa_02"
     CDS             complement(2249..2554)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MEKKFRDQLLAESGKEEEEIKDVNLEIEEREVSENGPFVLIRNKKNKWVITTCGALVNGKEFDTKEDAEKHLAKKEWDDILTAALIFFTHVKNQMENTQKE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2556..2726)
                     /locus_tag="Alpa_03"
     CDS             complement(2556..2726)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MNEKVKKIVKWIAVIAAAIGAAAAVILEQGCTHKHILKANGIKIDTIKVETSTRIK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 24 and 25 "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2723..3079)
                     /locus_tag="Alpa_04"
     CDS             complement(2723..3079)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MGSGIHNQKDRRHLNAKQDFKAYKNRGGIGDRAENLRELIGLERVVRQDFGYEGTYYVTEDGETYDEEYVDAHNPRKTGVKFYEVSNWRYNRKKGIYEPVIRRIVMIEIKEIQLTLEL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3128..3844)
                     /locus_tag="Alpa_05"
     CDS             complement(3128..3844)
                     /product="putative replication initiation protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="VRLMEEIKSNPKNIIFATLTFSEESLKKLEYDEKEPNKAPQKAISLFRKRWWKKYKEPLKHWLITELGHDNTKRIHLHGIIWTELTEEQFEKEWGYGWIFFGYEVNERTINYIIKYITKRDEANPEFNGKIFTSKGIGKEYIGENSLRRHRYQDRFTEETYRTNSGIKIALPTYYKQKLWTVQEREALRIIKEEKQVKYYNKTPIRVETIEQYREYVNAVKYWQSIKKYDGKRKKGNM"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022044634.1"
                     /inference="similar to AA sequence:INSD:CDN73649.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4036..5244)
                     /locus_tag="Alpa_06"
     CDS             complement(4036..5244)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MKFEDLLKLLEKGENLTNPLSGIIGGASGILNMLGVGRKKQIRQQKEMMENAAKINYKYGEMAAENAFERQQVLYDRTYQDQSYANKVAQMDAAGLSPGLMYGGGGASGGGAGSTTGAPMGATGAAGAGSAADPNMQLQALMSLRQVRMSERKNEAEINLLNTQADALKAEAGKNKEETQTIIDKRIWEVKQEMFKGWKGFIDTANQLWDQMVKWQPTEKTTIDGKEVEIPKYFEIEDDKFGKIVFGEESFQGGMMTAEKQILEGTAAIKTLESIYADEKLSAEIRKINADACSGMAQAAYYYAAGETQKAEAKMLEVKKRTEEATAELRELQYWTEIANTIIKLAQVVGNLTIGGKTGKLIREYTEKRMSETPPKNSTTVTQHFDPEMQFKGVDKTVTTKW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gaagcggtct gtgcggatat cgtattctgg tagcacaccg tctttttttt ctgtgtagat 
       61 tgttgggaat actccatctt ccatgctgct ggattctccg ctaattattt ttctcagttt 
      121 tacctccctt ggttctgctt ggtatgtgag gtctggattg ttgatgcatc cttttctgtt 
      181 tattgctgtt ttcatggtgt tataaatttg gaatttgttt tgctgacatt actcggcgcg 
      241 ctgttacgtc gaatgctact tgtacccaga agttctgcga actcagtctt gactctgcga 
      301 atatgctgtt gtatatcgta ggatcaatgt aggttgatgc gttgccgatt gtgtgatccg 
      361 agttttcttc gtacactctg ttcaagcaca taaatgctaa tggcattcct gcggcaaatt 
      421 cgccgtatgt ttcgtttacg tctgttgtgt attcgatcca tgacggctgt tttcctaatg 
      481 actgatatac gagttcatgg tcatcggtgg cttctgtagt ccacgctgct gcttcttctg 
      541 cgataagttc ttggaacccg atcgcgtcca atgttggctt gtggaagtca tccatgtttt 
      601 gcagtcttgt ccaccatttg ttgccctggc tgtaatcaat tcgaggtgtg atcgatccca 
      661 aggccataat catgctgggt tctgtacatt tgattttcaa gccccttccg gatttgtaca 
      721 tggttgcaac tcctcgtccg gcaagtgttc ccagtggttc ttcttctgtt gctgagtttg 
      781 atacgatttc gtcaaatgcg atttcgctct gcattccgcc gcagaatata ggtgattcag 
      841 gcagtgttgc gcttctgatt ccgtatgtcg cttctctcca tgcttggtaa gtaccgtctg 
      901 tgatcgcgac gcggtttagc atattgaaga ttttcttttg gaggatcaga gcatccattg 
      961 tgagtttgcc gtcgctcaca tctacggctg tgattgaatt gattccacct gttgttccgt 
     1021 cgatccattc ggtgttcagc cagttgttga acctgtcgct aaggtatgtt tttaccgcca 
     1081 accctgcttg tgagtaccat gcgtttgaac tgttatattt ttctctgcgg tcatagcttg 
     1141 gtagtcctat agtttttgtt gcggctccgt atggcattgt agcgccttct actacatatg 
     1201 ctgaggtact gggtgcagct aagattttat ttcgttcttg gtcgatgttt tttaatggaa 
     1261 atggtgttaa tttgattttt ttgttgtccg gcattgtcaa gtagttattt cctgctatgt 
     1321 tcatattgta tgcaaggtag attggcttct tgacttggta cacgtaaatg ttggtcgctc 
     1381 ttttcgggtt gtctggtttt ttgagtccca tcgcttccgg atctgttcgc tcgaaaataa 
     1441 aggcgtttcc gagttttgtt agtttgttga ttttttgtga aggtttttcc ggatcattcg 
     1501 ttaagaattg tatttcattg acttcctcag gtgatatttt ttcctcgaat tccagtttga 
     1561 taaaactcgg tgcttgactt gacggattga gtgggtatgc ttcacttgag ttttctgtcc 
     1621 actctctatt ccaagcaact ccatctcctg cactgatttt cttccaaata tggtttattc 
     1681 cggtgattac gtatgcgttt tcttcttgct tgttggcgta atagtttttg aatatgtccc 
     1741 agtatgccag attgaatatt gcaggaaagg ttcgaatgtg gctgttggtt ttggagtatc 
     1801 cgaatccttt tattcctaag tatgagagca gcgaactcgg attgacttgc cctctgttgg 
     1861 tatcgttttc atagattgat gcgacagcgg tgctgaccct gaattgcggc aacagtacct 
     1921 tgctcatgtt caaccctact cccagagcat tattatgcag tgctgctata tagagtctga 
     1981 ttggaattac gaacacatcg atttgatgtt tgaagcttcc gaatacaggc ccggttgttg 
     2041 gcagggtttt caccttcgtt gtgatgtcga tgtagaacgt cgttccatcc aaacctattt 
     2101 gacaccaata gggaacgatc gtgccgcatg cctgtgatgt tcggattatc tttcctacgt 
     2161 tgtgagacga tctgccgaaa ttaggcagat atacttccat tttgctttcg cttctgattc 
     2221 tgtctcctcc taatgttttt ttcatggttt attctttttg agtgttttcc atttggtttt 
     2281 ttacgtgcgt gaagaatatg agcgctgcag ttaggatgtc atcccattct tttttagcca 
     2341 gatgtttttc agcgtcttct ttagtgtcga actctttccc gtttacgagt gcgccgcatg 
     2401 ttgtgatcac ccatttgttc ttcttgttgc ggatcagtac gaacgggccg ttttccgata 
     2461 cttctctttc ttcgatttcg aggtttacat ctttgatttc ttcttcttct tttccgcttt 
     2521 cagcaagcag ctgatctctg aatttctttt ccatgttact tgattcttgt tgatgtttct 
     2581 actttgattg tgtcaatttt gatgccattt gctttgagga tgtgcttgtg agtgcatccc 
     2641 tgttccagga tcacggcggc tgccgcgccg atcgcagctg ctattactgc gatccatttt 
     2701 acgattttct ttactttttc attcatagtt ctaatgttag ttggatttct ttgatttcga 
     2761 tcattactat tcttctgatg acgggttcgt atattccctt ttttctgttg tatctccagt 
     2821 tgctcacctc gtagaattta acgccggttt ttcgtggatt atgagcatct acatattcct 
     2881 cgtcatatgt ttccccgtct tctgttacat agtatgttcc ttcgtatccg aagtcttgtc 
     2941 gaactactct ttccaggccg atcagttctc tgaggttttc ggctctgtct ccgattcctc 
     3001 ctctgttttt gtaggcttta aaatcttgtt tcgcgttaag atgtcttcta tctttctgat 
     3061 tgtgaattcc acttcccata tttcacgaat tagtttttct ttctttatga ttaagtctgc 
     3121 atagcctcta catatttcct ttttttctct ttccgtcata ttttttgatt gattgccaat 
     3181 attttactgc gtttacgtac tccctgtatt gttctattgt ttctactctg ataggagttt 
     3241 tattgtagta ctttacttgt ttttcctcct ttatgattcg gagggcttcg cgttcctgaa 
     3301 ctgtccataa tttttgtttg taatacgttg gtagtgcgat ttttattcct gagtttgttc 
     3361 tgtatgtttc ctccgtaaat ctatcctggt atctatgcct tctgagtgag ttctcgccta 
     3421 tgtattcttt tccgatccct tttgaagtga atatcttccc gttgaactca ggattggcct 
     3481 cgtctctctt cgttatgtat tttatgatgt agtttattgt tctttcattc acttcgtatc 
     3541 cgaagaatat ccaaccatat ccccattctt tttcgaattg ttcctctgtt aattctgtcc 
     3601 atataatgcc gtgtaggtgt attcttttgg tgttgtcatg tcctagctct gtgatcagcc 
     3661 agtgctttag tggctccttg tattttttcc accatcgctt tctaaatagg ctgattgctt 
     3721 tttgaggtgc tttgttcggt tctttttcgt catattccag cttttttagg ctttcctcgg 
     3781 agaatgtcag cgttgcaaat ataatgtttt ttggatttga ttttatttct tccattaatc 
     3841 tcactctcca ttcatttgct tttgcgcgtc tgcattcttc gcagtgcccg catggaattt 
     3901 gaatccatct taggcgataa tcctttattc ttttgcggtt ttcatttgat ttggcgtatc 
     3961 ttgggttctc aatgatactt ggatataggc acattggttt tatttgaaat tttccctctt 
     4021 aaaatcattt ttttcttacc attttgttgt tactgtttta tccactcctt tgaattgcat 
     4081 ttccggatcg aaatgctgtg ttactgttgt tgagtttttg gggggtgttt cgctcatcct 
     4141 tttttctgtg tattctctga ttagttttcc tgtttttcct ccgatcgtta gatttcctac 
     4201 tacttgtgct agtttaatga tcgtgtttgc tatctcggtc cagtattgaa gctctcgcag 
     4261 ttctgcggtt gcctcttcgg ttctcttttt tacttcgagc atctttgctt ctgctttctg 
     4321 ggtctcgcct gctgcataat agtatgctgc ctgagccatc ccgctgcatg catccgcgtt 
     4381 tatctttctg atctctgctg atagtttttc gtctgcgtat atgctctcta aagtcttgat 
     4441 cgccgccgtt ccctcgagga tctgtttttc agctgtcatc ataccgcctt ggaatgattc 
     4501 ctctccgaat acaattttgc cgaatttgtc atcttctatc tcgaagtact tcggtatttc 
     4561 gacttccttg ccgtcgattg ttgttttctc tgtaggctgc cattttacca tctggtccca 
     4621 cagctggttt gctgtgtcaa tgaagccttt ccatccttta aacatttctt gctttacctc 
     4681 ccatatcctt ttatcgatta ttgtttgggt ttcctctttg tttttacccg cttctgcctt 
     4741 gagtgcatct gcctgagtat taagtaggtt aatttctgct tcgttctttc gctcgctcat 
     4801 ccgcacctgt cgtagtgaca ttaatgcttg cagctgcata ttagggtcgg cagctgaacc 
     4861 tgcaccggca gcacccgttg cccccatggg ggcgcccgtc gtcgatcctg cccccccacc 
     4921 gctggccccg cctccgccat acattaggcc tggagacaat cctgctgcat ccatttgtgc 
     4981 gactttgtta gcgtagcttt ggtcttggta ggttctgtcg tataatacct gctgcctttc 
     5041 gaacgcattc tccgctgcca tttctccgta tttgtagttt attttggctg cgttctccat 
     5101 catttctttt tgctgcctta tctgtttttt cctgcctacg cccagcatgt tgaggattcc 
     5161 tgatgcgccg cctattattc ccgagagagg gtttgtaaga ttctctcctt tttcgagtaa 
     5221 tttcaataga tcttcgaatt tcattttcgt tcttttttta aaaagaattt atacttatgt 
     5281 tcttgttata tatgtataaa cgtctaccgc tctgtgccac acgcatttgc gagggttaaa 
     5341 agaggggggc ggaattatcc cccctctttg agttttggta gagctttata cgactgcttt 
     5401 agctcttttc gggatcggtt tttgtttctg tcccgaaatc cttcacggct tcggtttcac 
     5461 cgctgctttt tgcaatttgg cttgctgcgc tttg 
//
