FEATURES             Location/Qualifiers
     gene            54..710
                     /locus_tag="Alpa_01"
     CDS             54..710
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="VTSPDARLQRPEYLGGNRIPIVISEINQTSGTSANSTPQGNPSGQSRTTDVHSDFKKSFVEHGFIIGVMVARYDHTYQQGLERFWSRKGRLDYYWPVFANIGEQAVLNKEIYAQGNGTDDEVFGYQEAWADYRYKPNRVTGEMRSQAPQSLDVWHLGDDYSKLPSLSDSWVQEDSAVVNRVIAVSEENSNQLWADIFIKNKCTRAMPMYSIPGLIDHH"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL66947.1"
                     /inference="similar to AA sequence:INSD:CDL65904.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            723..1730
                     /locus_tag="Alpa_02"
     CDS             723..1730
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MAVSYGKNGAGWSPFPGGPVYDSGASSAVTANRGASGGSSSAINGIANNISKISGITSANNAWSAQQAEELRKWQEAQTDKAMKYNSQEAEKNRSWQEYMSSTAHQREIADLKAAGLNPVLSAMGGNGASVTSGATASSSAPSGAMGSTDTSGSSALVNLLGAMLTSTTELSKMSTSALTNLAVADKYNSVNKYLGELSSATQLKGYQISAQTALSTANISAAAQRYVSDNNLKGSLANAAATKIAATIHAEASKYAADKGYLSSENVANINASVNKQLKEMGIKADFDFAQMYPNNLYQMTGATVNNLKGILGDLMSQSAIDSVSSSKGLIKPW"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:CDL65860.1"
                     /inference="similar to AA sequence:INSD:CDL66940.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            1911..3017
                     /locus_tag="Alpa_03"
     CDS             1911..3017
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MPCYQPLWAIPDINPRTGKPYLTKNGKTKYHIFGSEKPLLDDPHLITIPCGKCIGCRLEYSRQWANRCLLEMKEHDSAYFVTLTYNDWHVPISHYIDQTTGEFCDVQTLRKRDYQLFMKRLRKAFPDQQIRFYAAGEYGPKTYRPHYHAILFGLKLDDLEPYGMSDQNYPYYWSKSLQKVWDEGENLQNLYEKVEKKPLQAYQNVLRYIQGCKESITPLTSRGFVLVADVSWETCAYVARYVTKKLTGEVASFYKEHNIEPPFSLMSRKPGIGRGYYDSNLDSLYDYDYINVSTRQGGVKFRPPRYFNRLLETDNPELSEKLREARKNLAKEISRCKLSQTDKRYMNMLDTEEEVKQEAVKTLRRSKL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:CDL66943.1"
                     /inference="similar to AA sequence:INSD:CDL65906.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3522..3662
                     /locus_tag="Alpa_04"
     CDS             3522..3662
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MASLGRIHTFGPYRTMRKAHEVFDIVTKVAPSDATVNIICEEDKNA"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3619..4158
                     /locus_tag="Alpa_05"
     CDS             3619..4158
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MPLSILSARRIKMPKFANQFEPHARIHTNPGTPEKVLYGPVFDENGTLDLEPKGKENLYDYIQSHKDSCDIKLIVDRCARGDLSALSKAQGMYGDFTTLPRTYAEALQALADAEHFFMRLPVETRAKFDHDPHKFIVSMDKPGFLEKLGVPVPNSGAEQQSPTLTTSAATAPAGEVSTD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP3"
                     /inference="similar to AA sequence:INSD:CDL65858.1"
                     /inference="similar to AA sequence:INSD:CDL65903.1"
                     /db_xref="InterPro:IPR014131"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gtgacgcaag aggtggtaca cgctatattg aggttttgaa gtctcacttt ggtgtgacct 
       61 ccccggatgc ccgtttgcaa cgcccggaat atcttggtgg caaccgtatt cccattgtca 
      121 tcagtgagat taaccagact agcggcactt ccgctaatag caccccgcaa ggtaaccctt 
      181 ccggccagtc ccggactacc gatgttcaca gtgatttcaa gaagtccttt gtagagcatg 
      241 gctttatcat tggcgttatg gttgcccgtt atgaccatac ctaccagcag ggtctagagc 
      301 gtttctggtc ccgtaaaggc cgtcttgatt attactggcc tgtattcgcc aatattggcg 
      361 aacaggcggt gttaaacaag gagatctatg cacagggcaa tggtactgat gatgaggtat 
      421 tcggctatca ggaagcatgg gctgactatc gttataagcc caatcgtgta acaggtgaga 
      481 tgcgttctca agctccccag tctcttgacg tttggcacct tggcgacgat tacagcaagc 
      541 ttccgtctct gtctgattcg tgggttcagg aagattccgc tgttgtcaac cgtgttattg 
      601 cggtcagtga ggagaacagt aatcagcttt gggcagatat ttttatcaag aataagtgta 
      661 cccgtgctat gcccatgtac agcattcccg gtctgattga ccatcattaa ggaggttgca 
      721 ttatggccgt atcgtatggt aagaatggtg ccggttggag ccctttcccc ggtggtcctg 
      781 tttatgatag tggtgctagt agtgcggtta cggcgaatag aggagccagc ggtggctcct 
      841 cttccgctat taacggtatc gctaacaata tatctaagat ttcaggcatc accagtgcta 
      901 acaatgcgtg gagcgctcaa caggccgagg agctgagaaa atggcaagaa gcccaaaccg 
      961 acaaggctat gaaatacaat tcccaggaag cggagaaaaa caggtcgtgg caggaataca 
     1021 tgtccagcac ggcccatcag agggaaatag ctgatttgaa agctgctggt ttgaatccgg 
     1081 tattaagtgc gatgggtggc aacggcgcga gtgttaccag tggtgcgact gcgtcttcct 
     1141 ccgctccaag tggggcgatg ggaagcacgg acacttccgg gagctctgct cttgtcaatt 
     1201 tgctaggcgc aatgcttaca agtaccaccg aactctcgaa gatgtcaaca tcggccttga 
     1261 caaacctagc ggttgctgat aagtataata gtgtaaacaa gtatcttggt gagcttagtt 
     1321 ctgctactca gttgaaaggc tatcagataa gcgcacagac ggcccttagt accgctaata 
     1381 tctccgccgc cgcccaaagg tatgttagcg ataataatct gaaaggcagt cttgcaaatg 
     1441 ccgccgcaac taagattgcc gccactatcc atgcagaggc tagtaagtat gccgccgata 
     1501 aaggctatct ttctagtgag aatgtcgcta atatcaatgc ttctgttaat aagcagttga 
     1561 aagagatggg tataaaagct gattttgatt ttgcgcagat gtatcccaat aatctttatc 
     1621 aaatgactgg tgctaccgtg aataatctta aaggtatatt aggcgattta atgagtcagt 
     1681 ctgctattga ttctgtatcc tcctctaaag gtttgattaa gccttggtag tttttgcact 
     1741 cgtgcccatt cctctcgata taatgggcac gagtgacacc aaagaaagaa tggggcagta 
     1801 aatatgtctg agttagaaag gttcgttcgt tctttactta aggttgttgc tgttgtgctc 
     1861 tgtctttttg ttgttacgtc tcttttaagg tcttgtatgt aggtgattag atgccatgtt 
     1921 atcaacccct ctgggctatc ccagatatca acccccgcac aggtaagccc tacctgacaa 
     1981 agaacggtaa gaccaagtat catatcttcg gctccgagaa accgctcctt gacgaccccc 
     2041 acttgattac aattccctgt gggaagtgta ttggatgccg actggagtat tcacgccagt 
     2101 gggcaaatcg ttgtctgctt gagatgaaag agcatgattc agcttacttt gtgaccctga 
     2161 cttataatga ctggcatgtt cctatttccc attatatcga ccaaacgaca ggggagtttt 
     2221 gcgatgttca aactctgcgg aagcgtgatt accagttatt catgaaaagg ttgcgaaaag 
     2281 ccttcccaga ccagcaaatt cgcttctatg cggccggaga atatggtcca aaaacgtata 
     2341 gacctcatta ccatgctatc ctgtttggcc taaaattgga cgatttagag ccttatggaa 
     2401 tgtccgacca gaactatcct tactattggt caaaaagttt gcaaaaagta tgggatgaag 
     2461 gagaaaactt gcaaaatctt tacgaaaagg ttgagaaaaa gcctttacaa gcctaccaaa 
     2521 atgtgctacg atatatacaa ggatgcaagg aaagtataac tccccttaca tccagaggat 
     2581 ttgtcctagt agccgatgta tcttgggaaa cctgtgcata tgtggcccga tatgttacga 
     2641 aaaagctaac tggtgaggta gctagtttct acaaagaaca caacattgag ccacctttta 
     2701 gtttaatgtc acgaaaaccc ggtattggta gaggctacta tgacagcaat ttagacagtt 
     2761 tgtatgacta cgattatata aacgtgtcta ccagacaagg aggtgtaaag ttcaggccgc 
     2821 cccgttattt caatcgtctg ttagagacag acaatcccga attatcagag aagctccgtg 
     2881 aagcccgtaa aaacctagcg aaagaaatat ctcgttgtaa gctctcccag accgacaagc 
     2941 gttatatgaa catgttggat actgaggagg aagtaaaaca agaggctgta aagacattaa 
     3001 ggaggtctaa gttgtgagta aacatgatgg aatatttaat gctattttgg ttctttggcg 
     3061 tgaggagtta ataacttcga gtgaatgtgt ttcccttatt ttgaaaaatc gtaagagaaa 
     3121 ggatgagttt ggaaatgcgt aaacgtcaac cccgagcgaa agacaagcgt tactttcgta 
     3181 gaaccgcatc ccaagccaaa gctatcaaca ttgaccccaa aatctatcga ggaggaatta 
     3241 gactatgatg ttcaacattt atgccgtccg tgacgtgaag gtaggtttcc agtctatcac 
     3301 catccagccc aatgaccccg tagccgctcg ctcctttgag agcactgtta tcaattccga 
     3361 ttctgttctg ttcacccatg ccgaggactt ctctttgtac cgtctaggca cttgggacag 
     3421 tgatactggc catatcatcc ccgaggaaat gcctgtcctg attctggaag ctaagacctg 
     3481 tctgctagga ggtaagaagc atgtttagct attccgtctg catggccagt cttggccgta 
     3541 tccatacctt tggcccttat cgtacaatgc gtaaggccca tgaagtattt gatatcgtca 
     3601 ctaaggttgc tccgtctgat gccactgtca atattatctg cgaggaggat aaaaatgcct 
     3661 aagtttgcca atcagtttga gccacacgcc cggattcaca ccaatccggg cactcctgaa 
     3721 aaagtcctct atggtcctgt gttcgatgag aatggtactc tagatctaga gcctaaaggc 
     3781 aaggagaatc tgtatgacta tatccagtcc cacaaggatt cttgtgatat caagcttatt 
     3841 gtagaccgct gtgcccgtgg agatttatct gccctttcta aagcccaggg tatgtacggc 
     3901 gacttcacca ccctgccccg gacctacgca gaagcccttc aagcccttgc agatgccgaa 
     3961 catttcttta tgcgcctccc agtcgagacc cgtgcaaagt tcgaccacga cccccataaa 
     4021 ttcatagtca gcatggataa acccggcttc cttgagaagc ttggagtacc agtccccaat 
     4081 agcggagctg aacaacagtc cccgacgcta acgaccagcg ccgctactgc acccgctggc 
     4141 gaagtttcaa ccgattaggt tgtaaacaat catccacttt aaaaactaaa taaaaaatct 
     4201 aattctaaat aggagctata atatgaatag gaatactaac agtcattttg cgttaaatcc 
     4261 tactagaata gatatgtcaa gaagtacgtt tgacagaaac agttctgtaa aaacaagctt 
     4321 caacgttggt gacattgtcc cattctatgt agatgaggtg ttgcccggtg acacatttga 
     4381 tatcgatacc tctaaagtta ttcgcatgcc ttccttactt actccaatta tggataatct 
     4441 gtatcttgat acctattatt tctttgttcc caatcgaatt gtttggcaac attggaaaga 
     4501 gcttatggga gagaataacg aaagtgcttg gatacccacc acagagtacg aagtcccgca 
     4561 gattacggct ccttctggtg gttggagtat cggtactatt gctgattata tgggtgtacc 
     4621 tactggtgtt agtggtctct ctgtcaacgc tcttcctttt agagcatacg ctttgatttg 
     4681 taatgagtgg ttcagagatg aaaacctctg tgacccgttg aatatcccct tgaccgacgc 
     4741 aaccgtcgct ggtgtgaaca ctggcacatt tgtgacagat gtcgcaaaag gcggcctccc 
     4801 ctacaagg 
//
