FEATURES             Location/Qualifiers
     gene            404..574
                     /locus_tag="Alpa_01"
     CDS             404..574
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MKRKEVNICISEIRNLLRSIDRSFVPNHVYDKSSLVYRNAADIRYIADILCKSLTH"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            617..787
                     /locus_tag="Alpa_02"
     CDS             617..787
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="VIVYTDIQSVRVLHYAVSTDYVEDFTQMIKDTFVHPDISFTDIIYSSDSRQFFQLI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:CDL65705.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            996..2543
                     /locus_tag="Alpa_03"
     CDS             996..2543
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MANLLPFIKCTSPIAIHRGSSIFLYPCRKCECCQVSRQKSLSTMLALEESHAKYCYFINPTYNDFNIPAVRVPDDADFGSIAEFEIITPRLKRDKYFEPYIVDYDVDLEKSIGQLCEQRDEYSRLYSRSHKFVPHDVIYLLHYPDIQRFIKRFRIYAKRKFNASCRYYVVGEYGTNSLRPHWHLLLFFDSDELAQDLERCYHPTDKELRKDPDLRFYNDHDCAECLRTLWKFGFATSERTNKSAYYYVSGYVTSTSRFPLCLSALSRPHSLHSRFFGQTLAEEEIQRAIVSQDFEYFRVHYRYSSKGYQIPYALWRSYYSRFFPVFTGLVNMSNEKIFRLFEYWEEIGKLSGYYRVSNQVQWLKNWYYYYYSRPLETIPSPIADVLLNLQSTFDLSEHCLHPEDFSALHDVLYASKRFCWLCSWLNMSHKQYFEIWSNFYKYINLSLYKEHYLALENDSKYFRGWFDRRFITPTAVLEFPLADSDFTNFVENSVSTHDSLIKHREIGDRYKHIYQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:CDL65709.1"
                     /inference="similar to AA sequence:INSD:CDL65737.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2546..4417
                     /locus_tag="Alpa_04"
     CDS             2546..4417
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MANRSNIMGLHGLKNKTSRNSFDLSHRNLFTAKVGELLPCFVQEVNPGDSIKLDSSYFTRTAPLQTAAFTRLRENVQYFFVPYQCLWKYFEGQVKNMTKNANGGDISQIATSPFANAKVSTEMPFISYTALHAYLNKLLNYVDSSANPTELSNPFLYNNGCWRHAESAKLLQLLGYGNFVQQFKNFSASKPYSLLHVENAPALSVFRLLAYQKICNDFYTYRQWQPYNASLCNIDYITPDSSSSMDLSSKFSSISVSDLGKSNMLDMRFSNLPLDYFNGVLPTPQFGSESVVSLSQNADVYTGFDKSQWQTLDGSAFPSGSVSSSNSDRSLTANGKSIEHVHILPSGSITSSLSIAALRQATALQKYKEIQLANDPDFESQIEAHFGIKPKHDMHKSRFIGGSSSMIDINPVVNQNLGAGQNQDNQAVTKAAPTGQGGASFKFTADTFGVVIGIYRCTPVLDYSHVGIDRTLLKTDASDFVIPELDSIGMQQTFQCELFAPTSQMTASAPDKRKYDMSRTFGYAPRYSEYKVSFDRYNGAFCDTLKSWVTGFNTHIFDSDRWNDRSYFSISVPQLFVCRPDIVKDIFALQTYHDSNDDNLYVGMVNMCYATRNLSRYGLPYSN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65708.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4430..4864
                     /locus_tag="Alpa_05"
     CDS             4430..4864
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MFDNEFLSYIPPIGEDLQHTKVSDDCTKLHSDIYLLHHIGDLNISNNLADAIKSRLQSVSDFMPDDLRQSFDKLDDFQKMEVTDSRYAQWVSDKVSRTKQFMKEYDTALSKLKDSEETEKLKVAQKNLRDFILRLGSAEESDNS"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:INSD:CDL65707.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4921..6030
                     /locus_tag="Alpa_06"
     CDS             4921..6030
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MASKFDPLSLLSPGISAIGSIVGGLFGKKGSDNAAKAQLQIARETNANNYRIAQENNAFNERMVDKMNDWNSAKNQRARLEEAGLNPYLMLDGGSAGTATTAPTADTSSVQSAPDVGSTIASGAQQLGSSISSAASQISQQVYNSSLQEANVRKANADASSSEQDALLKGIESQFAAQRFLLDLKLKEMQGKVSEQDYYYLRDSMQDRLDSVKFQNTLTGSQSSYYNQMAGLVDVQRQIEKTNLDWLPREKQAGLAATLQNVRTMVSQMHLNYAQAKNAYAMAALNYAQEAGVRLNNKLQDSIFDLSVGMAENQYEQGRADAAQHIFGFNLPSANAFVYSQAGNVRQVFNKKERTPMRTPHRRARKPKQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:INSD:CDL65706.1"
                     /inference="similar to AA sequence:INSD:WP_007368519.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gancagaaag acaattattt gtcgtttgaa ttgcgacgaa ggagtctttt acaaacgtca 
       61 aaattatgtt ctttttcaca tttccgttgg tcgaacactc aagcaagtga agcgtgcgaa 
      121 gcacgaaaaa tatgcaaagt cgggttactt tccccgactt ctcctccctc ttgttcattt 
      181 atagcaaaag tgacacaacc ataatttggt gttgtggtag tttacgcact tttgtgctaa 
      241 tatgcaatct agagtttaca tttcacgtga aacattgtga aagtaatata aaattcgtta 
      301 ccataatacc ggttataaat aaatgtgttt atctttgcgc tcgttatcag ttacttaatg 
      361 tttctgattg attagtttaa tgtaaaaata aaatttttgg cttatgaaac ggaaagaggt 
      421 aaatatttgt atttctgaga ttcgtaatct tttacggtct attgataggt cttttgtacc 
      481 taatcatgta tatgataaga gttctttggt gtatcgaaat gctgccgata ttcgctatat 
      541 agctgatatt ctttgtaagt ctttaactca ttagcttatg aaaaagaaag tttgtttccg 
      601 tcagtatctt cgatgtgtga ttgtctacac cgatattcaa tctgtccgtg ttcttcatta 
      661 tgcggtttct accgattatg ttgaggattt tacccagatg attaaagata catttgttca 
      721 ccctgatata tcctttacgg atattatcta ttcttccgat tcacgtcaat tttttcaact 
      781 tatatagata tgaataaaga agtattaaag attattatta aggttttgat ttatgcctta 
      841 ggtttgattg gttctgtctt tggcatttct gccttaactt cgtgtacgtc tagccgtgcc 
      901 gttgagtgcc acggcaagac aactatcctt attcaggata ccacgacagt tgagcactct 
      961 agtgattttt ttcgtaattt caaatatcgg tattaatggc aaacttatta ccctttatta 
     1021 agtgcacgtc tcctattgct attcatagag gttcttctat ttttttatat ccttgccgta 
     1081 agtgtgagtg ttgtcaggtc tctcgacaaa agtcactttc taccatgttg gctttggaag 
     1141 aaagtcacgc taagtattgt tatttcatta accctactta caatgatttt aatattccag 
     1201 ctgtccgtgt tcctgatgat gctgattttg gtagtattgc tgaatttgag attattacac 
     1261 ctagattaaa gcgtgataag tattttgagc cttatattgt tgattatgat gtagatttag 
     1321 aaaagtctat cggtcagctt tgtgagcaac gtgacgagta ttctcgtctt tactctcgtt 
     1381 cacataagtt tgttcctcat gatgttattt atctcttgca ttatcccgat attcaacgtt 
     1441 ttattaaaag gtttcgtatt tatgcaaaaa gaaaatttaa cgcttcgtgt cgctactatg 
     1501 tcgttggaga gtacggcact aactcactcc gtcctcattg gcatttgtta ctattcttcg 
     1561 attccgatga gttggcacaa gatttggaac gctgctacca tcccacggac aaagaactca 
     1621 ggaaagaccc tgatctcaga ttttacaacg accacgattg tgcagagtgt ttacgtacgc 
     1681 tttggaagtt cggttttgcg actagtgaac gtacaaacaa atccgcttat tactatgttt 
     1741 ccggttatgt tacgagcact tctcgctttc ccctctgctt gtcggcttta tcaagacccc 
     1801 actcgctgca ctctcgtttc tttggtcaga ctttggcaga agaagagatt caacgagcaa 
     1861 ttgtctctca ggacttcgaa tatttcagag ttcattatcg ttactctagc aagggctatc 
     1921 agattcctta tgccctttgg cggtcgtatt actctcgatt cttccccgtc ttcactggac 
     1981 ttgttaatat gtctaatgaa aaaatatttc gtttatttga gtactgggaa gaaatcggta 
     2041 agctctccgg ttactataga gtaagtaatc aggttcaatg gttaaagaat tggtattatt 
     2101 actattattc tagacctctt gaaactatac cctctcctat tgcagatgta ttgttaaatt 
     2161 tgcaaagtac gtttgatttg tctgaacatt gtcttcaccc agaagacttt tcggcattac 
     2221 atgatgtgtt gtatgctagt aagcggttct gttggctttg ttcatggctt aacatgtctc 
     2281 acaaacaata ttttgaaata tggtctaatt tttataagta tattaatctc tctttgtata 
     2341 aagagcatta tttagcattg gaaaatgatt ctaaatattt ccgtggttgg ttcgatagaa 
     2401 gatttattac tcctaccgct gttttagagt ttcctttggc tgattctgat tttactaatt 
     2461 ttgttgaaaa ttctgtctct actcatgatt ctcttattaa acatcgtgag attggagata 
     2521 ggtataaaca catttatcaa taattatggc taatcgtagt aacattatgg gtttacatgg 
     2581 tcttaagaat aagacctccc gaaattcttt tgacctctca catcgtaacc tctttaccgc 
     2641 taaagtcggt gagttgttgc cttgcttcgt tcaagaggtt aacccaggtg attctattaa 
     2701 gttagattca tcttatttta ctcgtactgc acctttgcag actgctgctt ttactcgtct 
     2761 tcgtgaaaat gtacagtact tttttgttcc ttatcagtgt ttgtggaagt attttgaggg 
     2821 tcaggttaaa aacatgacca aaaatgctaa tggtggtgat atttcgcaga ttgctacctc 
     2881 tccttttgct aatgctaaag tgtcaactga gatgcctttt atatcttata ctgctttgca 
     2941 tgcttacctt aataagttat taaattacgt tgattcttct gccaacccta ctgagttgag 
     3001 taatccattt ttgtataata atggttgttg gcgtcacgct gaatcagcta agttattgca 
     3061 gttgttaggt tatggtaatt ttgttcagca gtttaagaat tttagtgcta gtaaaccata 
     3121 ttctttactt catgtagaga atgcccctgc tttgtctgtt tttcgtctcc ttgcttacca 
     3181 gaagatttgt aatgattttt atacttatcg tcagtggcaa ccttataatg cttctttgtg 
     3241 taatatagat tatattacgc ctgattcttc gtcctctatg gatttaagct cgaagttctc 
     3301 ttccatttct gtttctgatt taggtaagtc taatatgctt gatatgcgtt ttagtaactt 
     3361 gcctcttgat tattttaacg gcgttttacc tacacctcag tttggttctg agagtgttgt 
     3421 ttctttatct caaaatgcag atgtttatac tggttttgac aaatctcaat ggcaaactct 
     3481 agatggaagt gcttttcctt ccggttctgt ttctagttct aatagtgacc gctccttgac 
     3541 tgctaatggt aaatctattg agcatgttca tattcttcct tctggttcta ttacttcttc 
     3601 tttgtctatt gctgctttgc gtcaagctac tgctttacag aagtataaag aaattcagct 
     3661 tgctaacgac cctgattttg aatctcaaat cgaagctcat tttggtatta agccaaagca 
     3721 cgatatgcat aagtctcgtt ttatcggtgg ctcatctagt atgattgata ttaacccagt 
     3781 tgttaatcaa aatctcggcg ctggtcaaaa tcaggataac caagctgtaa ctaaagctgc 
     3841 tcctactggt caaggtggtg caagttttaa gtttactgct gatacttttg gtgttgttat 
     3901 tggcatttac agatgtactc ctgttcttga ttattctcat gtaggtatag accgaactct 
     3961 tttaaaaact gatgcgtctg attttgttat tcctgagctc gactctatcg gcatgcagca 
     4021 gacttttcag tgtgaacttt ttgctccaac ttctcagatg actgcttctg ctcctgataa 
     4081 gcgcaaatat gatatgtctc gtacttttgg ttacgctcct cgttattctg agtataaagt 
     4141 ttcatttgat agatataacg gtgctttttg tgatactttg aaatcttggg ttactggctt 
     4201 taatactcat atttttgata gtgatcgttg gaacgatagg agttatttta gtattagtgt 
     4261 acctcagctt tttgtttgcc gtcctgatat tgtcaaggat attttcgcgc ttcagactta 
     4321 tcatgattcc aatgacgata atttatacgt tggtatggta aatatgtgtt atgctactcg 
     4381 caatttgtct cgttatggat tgccttattc taattaaaat ttgtgtatta tgtttgataa 
     4441 tgaattttta agctatattc ctcccattgg tgaggacttg cagcacacta aagtttctga 
     4501 tgactgcact aagttacatt cagatattta tttgctgcat catattggtg atttaaatat 
     4561 ctctaataat cttgctgatg caattaagtc tcgtttgcag tctgtttctg attttatgcc 
     4621 agatgatttg cgtcaaagtt tcgataaact cgacgatttc caaaaaatgg aggttaccga 
     4681 ttcccgttat gctcaatggg tttctgataa ggtttctcgt actaagcagt tcatgaaaga 
     4741 atatgatact gctctttcta agttgaaaga ttctgaggaa actgaaaagc ttaaagttgc 
     4801 ccagaagaat ttgcgtgatt ttattctgcg tcttggttct gctgaggagt ccgacaactc 
     4861 ctaattatat atcttttgcc ctaacatgtc ggtgttaggg ctttttaatt attttgtgtt 
     4921 atggctagta aatttgaccc tctatctctc cttagtcctg gcatttccgc tattggttct 
     4981 atagttggcg gtttgtttgg taaaaaaggt tctgataatg ctgctaaggc ccaattgcag 
     5041 attgctcgtg aaactaatgc caataattat cgtattgctc aggaaaacaa cgctttcaac 
     5101 gaacgtatgg ttgataaaat gaatgattgg aactctgcta agaatcagcg tgctcgattg 
     5161 gaggaagccg gtttaaaccc ttatctgatg ttagatggtg gttctgctgg tactgctact 
     5221 actgctccaa ctgccgatac ttcatctgtt cagtctgctc ctgatgttgg tagtaccatt 
     5281 gcatcaggag cccaacagtt aggtagttct atttcttctg ctgcgtctca gatttctcag 
     5341 caagtttaca actcttccct tcaggaagct aatgttcgta aggctaatgc tgatgcttca 
     5401 tctagtgaac aggatgcttt gcttaaaggt atagaatccc agtttgctgc tcagcgtttt 
     5461 ttgcttgacc ttaaactaaa ggagatgcaa ggaaaagtat ctgagcaaga ttattattat 
     5521 ttgcgtgata gtatgcaaga taggcttgat tctgtcaagt ttcagaatac tcttactggt 
     5581 tctcagtctt cctactataa tcaaatggct ggtctcgttg atgttcaacg tcagattgag 
     5641 aaaaccaatt tggattggtt acctcgtgaa aaacaagccg gtcttgctgc tactttgcag 
     5701 aatgttcgta ctatggtttc ccagatgcat ttgaattatg ctcaagctaa aaatgcttat 
     5761 gctatggctg cgcttaatta tgctcaggaa gctggagttc gtctcaataa taagttgcaa 
     5821 gattccattt ttgatttgtc tgttggtatg gctgaaaatc agtatgagca aggtcgtgca 
     5881 gacgctgctc aacatatttt tggttttaat cttccttctg ctaatgcttt tgtttatagt 
     5941 caagcaggta atgttagaca agtttttaat aaaaaagaac gtactcctat gcgtacacct 
     6001 catagaagag cacgtaaacc taaacaataa tttgtttata tttacgtttt atagatatgg 
     6061 atagatttat tttatattgt ataggcttat ttctagcctt tttgttagtt ggattgttat 
     6121 ttacaatcta ttgcgtttct atctcttaat atttgcgcgt gtgcgattta acgtacgcgc 
     6181 gcatttattt tgtatacatg tgcgagtttc cgatgaagga aacgacaacc cagccactta 
     6241 aactcaatcc gtcaggcttc aatacttatg aaaaacacta gccttttggt tcttttgggc 
     6301 aatgccaaaa gaacaccctc ggtagagccc gcggagcgta aacgcgctcg gttccgcgcg 
     6361 ctaggcggaa ctcaggttat agggctgaaa gccctaatcg ccagttatcg ttagttctct 
     6421 gagcgcaaca taatagacgt tatgacatta gaaaattctg cgtaggcaaa ttttccatgt 
     6481 cgtaacgttt attatgttgt g 
//
