FEATURES             Location/Qualifiers
     gene            complement(305..1939)
                     /locus_tag="Alpa_01"
     CDS             complement(305..1939)
                     /product="capsid protein VP1"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MKRPRRNAFNLSYESKLTLNMGELVPIMCMPVVPGDKFRVKTESLVRLAPLVAPMMHRVNVFTHYFFVPNRLVWNEWEDFITKGVDGEDMPMFPKIQINQDSHLVSSASLIKEYFGDSSLWDYLGLPTLSACGNKSYDVVNGVKVPSGFQVSALPFRAYQLIYNEYYRDQNLTEPIDFTLGSGTTVGGDQLMALMSLRRRAWEKDYFTSALPWLQRGPEVTVPVQGAGGSMDVVYERQSDSQKWVDSSGREFENGRAYDITMTRANDPNSALMVAVNGGTNNRAPELDPNGTLKVNVDEMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQFLGGGRMPISVSEVLQTSSTDETSPQANMAGHGISAGINNGFKHYFEEHGYIIGIMSITPRSGYQQGVPRDFTKFDNMDFYFPEFAHLSEQEIKNQELFVSEDAAYNNGTFGYTPRYAEYKYHPSEAHGDFRSNLSFWHLNRIFEDKPNLNTTFVECRPSNRVFATSETEDDKFWVQMYQDVKALRLMPKYGTPML"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_022322420.1"
                     /inference="similar to AA sequence:INSD:WP_005867318.1"
                     /db_xref="InterPro:IPR003514"
                     /db_xref="InterPro:IPR016184"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1966..2802)
                     /locus_tag="Alpa_02"
     CDS             complement(1966..2802)
                     /product="putative replication protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MYLASVEAKVPCGWCVNCRQNKRQSWVYRLQAEAKEYPLSLFVTLTYDDEHLPIERIGSDLFQTNVAVVSKRDVQLFMKRLRKKYEDYKMRYFVTSEYGAKNGRPHYHMILFGFPFTGKMAGDLLAECWQNGFVQAHPLTIKEIAYVCKYMYEKSMCPEILRDEKKYKPFMLCSRNPGIGFGFMKADIIEFYRRHPRDYVRAWAGHKMAMPRYYADKLYDDDMKAFLKEMREEFFRHKMFNEWIDYCARENPILTDLMQLEQREEYEKRMNERLRCKM"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_022322419.1"
                     /inference="similar to AA sequence:INSD:WP_005867316.1"
                     /db_xref="eggNOG:bacteNOG07343"
                     /db_xref="eggNOG:bactNOG166725"
                     /db_xref="eggNOG:bctoNOG24068"
                     /db_xref="eggNOG:NOG117857"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3025..3897)
                     /locus_tag="Alpa_03"
     CDS             complement(3025..3897)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MPIGAIVGGLGSLAGSMIGANAQRQANIQNMQLAKYQNNWQTAENEKAYARSVEMWNMQNQYNSPTAQMSRLRQAGLNPNLVYGSGVTGNSAGSAPQYQPAKIQRATMEPYRGWNLGLSDAASMYMAMRQNKAQVENMEAQNKLIKEQARTEGIRQGNIAMSTARSGFDLNLARELRNVSIDRAIAEKNLSEASAAGAWTGANQKVLQYELDRTLFDNKIKLSNAEYSTAMEALRKLRQDNDINAFRYSMERVFGNSSDVKDVASELVKRMGLLLMRPDIKELDQMFNPK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 22 and 23 "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:INSD:WP_022322418.1"
                     /inference="similar to AA sequence:INSD:WP_005867312.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3899..4090)
                     /locus_tag="Alpa_04"
     CDS             complement(3899..4090)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MRRFYFHVQFTDVEGVERFRSIQFSARDIIQAHNAGRKLVALLVCDHTVKEINAYYLESLKID"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 gatcattctt taatgtagcg taatcagcca aatcgaaatc cgggtcctct gtaggtaata 
       61 catcatcaaa atcttggtca tgatcgggat aatcaccgga tcgaacaccg gaagaaacag 
      121 gcatccccat tgcgaggcgg taaataagtt cacgaactgt aaaactttcg gaaggttcta 
      181 ccagaacttc gtcacttact ttttcttgaa taagttccga aggaagatta ctaaaattat 
      241 aagcggtaac aaacatatga acaaaaaact aaaaaatgca acaataaaaa attcaagcat 
      301 aatattaaag cattggagta ccgtatttag gcatcaaacg aagagctttg acatcttggt 
      361 acatttgtac ccaaaactta tcgtcttcgg tctctgatgt agcaaaaaca cggttactcg 
      421 gtctacactc aacaaatgta gtatttaagt tcggtttgtc ctcaaaaata cgattcaaat 
      481 gccaaaatga aagattacta cggaaatcgc catgagcttc cgaaggatga tacttatatt 
      541 cagcataacg cggagtataa ccaaacgtac cattattgta agctgcatct tcagatacaa 
      601 acaattcttg attcttaatt tcctgttctg acaaatgggc aaattccggg aaatagaaat 
      661 ccatgttatc aaacttcgta aaatcacgcg gaacaccctg ttgatagccg gaacgcggag 
      721 taatagacat gataccgata atatatccat gctcttcaaa ataatgcttg aaaccgttat 
      781 tgattccagc agaaatacca tgtccggcca tatttgcctg cggtgacgtt tcatcagtcg 
      841 aggatgtttg caatacttcc gacacagaaa taggcatacg accgccaccg aggaactgcg 
      901 gacgctgtaa acgcgcatca gatgaacgaa caccaaagtg tgacagaatc tgttcaatat 
      961 aacgagaacc accacgagcg ttacgttcga accaacgctg caaagcattc gaagtacgaa 
     1021 ggtcgttaat gttaattccc atctcgtcaa cattgacttt taatgtaccg ttcggatcga 
     1081 gttcgggcgc acggttattt gtaccaccat tgacggcaac cattaaagca gaattaggat 
     1141 cgttagccct ggtcatagta atatcataag cacggccatt ctcaaattca cgaccagaag 
     1201 aatctaccca tttttgacta tcagactgac gttcataaac aacatccata gaaccgccag 
     1261 cgccttgcac aggaacagtg acttcgggcc cacgttgcaa ccacggaagg gcagaagtaa 
     1321 aatagtcttt ttcccaagca cgacgacgaa gcgacatgag cgccataagc tgatcaccac 
     1381 caacggttgt tccactacct aaggtgaaat cgataggttc ggtcaaattc tgatcacgat 
     1441 aatactcatt atagatcaac tgataggcac ggaaaggcaa cgcggatact tggaaaccgg 
     1501 aaggaacctt aacgccgtta acaacatcat aagatttatt accacaagca gaaagcgtag 
     1561 gcaatccaag ataatcccag agagaagaat cgccaaaata ttcttttatt aatgaagccg 
     1621 aagaaactaa gtgcgagtct tgattaattt gaattttcgg gaacattggc atatcttcac 
     1681 cgtctacgcc tttagttatg aagtcttccc attcattcca cacaagacga ttcggcacaa 
     1741 agaaatagtg agtaaaaaca ttcacgcggt gcatcatagg agccacaagg ggagccaaac 
     1801 gcacgaggga ttcagttttc acacggaatt tatcaccggg aacaacaggc atacacataa 
     1861 taggtacgag ttcgcccatg ttcaacgtta actttgattc atatgataag ttgaaagcat 
     1921 tccgacgagg acgtttcatt cttatcgagt taaatatatt tgccattaca ttttacatct 
     1981 taaacgttca ttcattcttt tttcatactc ttcgcgttgt tcaagctgca tgagatcggt 
     2041 aagaatagga ttttcacgag cacaataatc aatccactca ttgaacattt tatgtcggaa 
     2101 aaactcttca cgcatttcct ttaaaaaggc tttcatatca tcatcataga gcttatcagc 
     2161 ataataacga ggcatagcca ttttatgacc ggcccacgca cgaacataat cacgaggatg 
     2221 tctacgataa aattcgatga tatcagcttt cataaatcca aagccaatac cgggatttcg 
     2281 ggaacaaagc ataaaaggtt tgtacttctt ttcatcccga agaatctcgg gacacatact 
     2341 tttttcgtac atgtatttac agacataagc aatctctttg attgtcaaag ggtgagcttg 
     2401 tacaaaacca ttctgccaac attcggccag taagtcacca gccattttac cagtaaaagg 
     2461 gaagccaaat aagatcatat gatagtgagg gcggccattt tttgcaccat attcagaagt 
     2521 gacaaaataa cgcattttat agtcctcata tttctttcga agccgtttca taaacaattg 
     2581 tacatcacgt ttggatacta cggcaacgtt cgtttgaaat aggtcactac caattctttc 
     2641 tatcggtaaa tgttcatcat cataagtaag agtgacgaac aacgatagcg gatattcttt 
     2701 ggcttccgct tgtaagcgat atacccaaga ttgacgctta ttctgacgac agtttacaca 
     2761 ccaaccgcaa ggaactttcg cttctacact ggcaagatac atagggtgaa ggcatttagc 
     2821 cattcaacgc aggggtatcg ggtttgtcaa agatcgactt tacagcatca atgaccgttt 
     2881 ctaaaacggc aatgataatt ttccaaactg gtttcataag cgaacacctc ctctacttac 
     2941 acgataacca cgaattctac gtcttctact acgaccgaga aatccacgtc tacggcctct 
     3001 acgtctacgt ctcataacaa aaaattattt ggggttaaac atttggtcaa gctccttgat 
     3061 atcgggacgc atcaataata aacccatacg tttcaccaat tcagaagcca catcttttac 
     3121 atcagaacta tttccaaaaa cacgttccat gctataccgg aacgcattaa tatcattatc 
     3181 ctgtcgaagt ttacgaagag cttccatagc agtagaatat tctgcattcg aaagcttaat 
     3241 cttattgtca aacagggtac gatctaattc atattggagt accttttgat tcgcaccagt 
     3301 ccaagcacca gcagcgcttg cttcggagag atttttctct gctatagcac gatcaataga 
     3361 tacgttacga agctcacgag caaggttaag atcaaacccg gaacgagcgg tagacatagc 
     3421 aatattgcct tgacgaatac cttcggttcg agcttgttct ttaatgagct tattttgagc 
     3481 ttccatgttt tcaacttgag ctttattttg acgcattgcc atatacatag acgcagcatc 
     3541 agataaacca agattccagc cgcggtaggg ttccattgta gcacgttgga ttttcgcggg 
     3601 ttgatattgc ggagctgaac cagcgctatt accagtaaca ccactaccat aaaccaaatt 
     3661 aggattaagg ccagcttgcc gaagacggga catttgcgca gtcggtgaat tatactgatt 
     3721 ctgcatgttc cacatttcga cactacgggc ataagccttt tcattctcgg cggtttgcca 
     3781 gttgttctgg tatttagcca actgcatgtt ctgaatatta gcctgtcgtt gggcatttgc 
     3841 accaatcata gaaccagcaa gagagccaag accaccaact atagcaccaa taggcatact 
     3901 aatcaatttt aagtgattct aaataatacg cattgatctc ctttacggta tgatcacaaa 
     3961 cgagaagagc taccaatttt ctaccagcat tatgtgcttg tataatatca cgggcagaga 
     4021 attgtatact acgaaagcgt tcaacacctt ctacatcagt aaattgtaca tgaaaataaa 
     4081 accgtctcat tgtcctttta atttaaggct accgagattc ttttagaact atggtagcgt 
     4141 gatttatgca gcaaagaaaa taaaatattc cacactgaaa aaaacggatt gttaaaatcc 
     4201 gtttaggtgt cagtgcgcgc ataattaatc gagttaccta ttacgcgcgc acgagtacat 
     4261 acaaccccct attatccccc tttaaaaggg ggtaaagtat tgatttataa cgttaacact 
     4321 ttttatattc tatttattct atttataagc gtataaacag gtctactcca ttgagggcga 
     4381 tcgcgttcgg gtacctcagg gtatcacgtc gctacgcttt gttctaccct attggtaccg 
     4441 tctcgcgatc gcaggcaact atcgttgcca attttcaccg tcgctatgat tgtcgttaca 
     4501 gacgccttcg gcagataggt atcgcttcgc gatcgattga aaaacgtgaa tttttcacgt 
     4561 aaaggttttg gttaaattgg gtcgcgagaa agaccatgcc aagacgacgt ccgctttcgc 
     4621 gagttgtcgc gatcagcgca ggtgcaagta caaaccg 
//
