FEATURES             Location/Qualifiers
     gene            complement(1..468)
                     /locus_tag="Alpa_01"
     CDS             complement(1..468)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MGLLDFIPVVGDIASSIGNVVSTNKANNANMAVNRMNNEFNAAEAEKARQFQLDMWNKTNEYNSASAQRSRLEEAGLNPYLMMNGGSAGTAQSSGSSTPASASSPLSMQRQDFSGLSNTLASALQISNQTKETNANVQTLQSQKSLYDAQANVFV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_004291034.1"
                     /inference="similar to AA sequence:INSD:WP_007558289.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(471..977)
                     /locus_tag="Alpa_02"
     CDS             complement(471..977)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MRETEKNSCTCFGPGYRKCTPIREVQICPICASSEPDIVLEELPTEPFRFEKVGTEENEAVRVRSDVSMLLHAADMAKKYGTGFVKSMIEMHRPKSSGLQSEMDLMSDAQILDTIKSRHLQSPSELIAWSEYLIDQAKSIEDEASRIALERESAGTPQEPNSSDSQSE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_008775337.1"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(990..2906)
                     /locus_tag="Alpa_03"
     CDS             complement(990..2906)
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MAHFTGLKELQNRPHKSGHDISAKNCFTAKVGELLPVWTDFAIPNCTYRINLEYFTRTRPVQTSAYTRIREYFDFFAVPCDLIWKSFDSAVIQMGEKAPIQSKDLLTNLTVKGDLPYCSLSDLSFALKFASGNPASLGNKVSVSPGFGNIFGYNRGDVNHKLLSMLDYGNVVDKSANWIGTNANRWWNRRVATADSAVYSQKYNVNLAVNLFFLATYQKIYQDFFRWSQWENADPTSYNFDWYRGSGNLFGSSDLAAAIPASSDYWKRDNLFSLRYANWNKDKFMGILPNSQFGDLAVVDLGTISASGSKIPVGAYDGVNDSGTFKQFQTSSESYNGSSDKTTQIYPRNPDSISVRADSNLWAVLGESSDLKLKFSVLALRQAEALQKWKEITQSVDTNYRDQIKAHFGVSVPQSEAHMAKYIGGVARNLDISEVVNNFLPGPGNDSSQAYIYGKGVGSGQGSMTFNTGSGYYILMCIYHAVPLLDYSISGPDGQNLVTSVEDLPIPEFDNIGMESVPAVELMNSSLYSNVNSADKILGYSPRYYNWKTKIDRIHGAFTTTLKDWVAPIDDSFLYSLFGDSLSTYKGVTWPFFKVNPNTLDDLFAVKVDSTWETDQLLVNCNVGCYVTRPLSADGVPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2917..4617)
                     /locus_tag="Alpa_04"
     CDS             complement(2917..4617)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MINQEVIDKYLLAECLHPVKVLNKYTNDFIYSPCGHCYSCLKNKSNRDTALAMNIASNFKYCYFVWLSYEDQYLPYMELKSIDSLDNNRSNYFFSSVNRNLRILVPNGKDRIIEDPLFEFTHPMTSFEYQDIIVKSHGRYDFLRKCVVYPRFEDCDNRIPYCNTSDCQKFLKRLRFHSKNKYNEEIRFYGVSEYGPRTYRPHWHLLLFFNSDELTSVIQQFVSESWSYGRTTCELSRGGSSSYVASYVNSNVCLPSLYLQHKEIRARSLHSKGYGNNYVFPTQATIHEFDKMYSLLLNGESISFNGKAKQIYPSRSYKHTVFPRFSNLVCKSAHSSAFVFSAAFFTPERLVRYGYLDITYDKSVSPVSQLAHAYTDFFLNREDKRSISFDDELIITTVRLDAPNRKYWHCLTYDQIYSKFYRLFNTVIRTARFWNLFAYVDSCRRGPIYDLMNFSDNYWNEFARRRLSDYFAFLENCNDRQRSFLFHHTALNEVFNSRFVSRFKTVDKGGYELTESFSEFDKRDYMYDSTLSQEFLKELTAINRKACVDKVKHKEFNDLSGLLLNN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4620..4793)
                     /locus_tag="Alpa_05"
     CDS             complement(4620..4793)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MENEFVLVSVKPKNSQSQGQIFVVRRKDISSFVETKLSSDNILLIDSIDTFAISSEQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4805..5002)
                     /locus_tag="Alpa_06"
     CDS             complement(4805..5002)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MKITPQQWIEIVKLISTFIIGVITCLFVQSCTASMSISKYNSNSSQSTEQTSTSSVDSTKISINR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4999..5202)
                     /locus_tag="Alpa_07"
     CDS             complement(4999..5202)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MYISSIVVVFAPKSPGLEHLSAVSLALDYRVGCTLFHAVEYVSKHPLVKPCLNKYVIASLSFQYSEL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5975..6391)
                     /locus_tag="Alpa_08"
     CDS             complement(5975..6391)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MAAQYYDAMASGHLKYQQAKSEITKRILMMAEAKGLQINNKAAEDTADGYIKALNAEYSASYDINSPFKYGEDSYVPASVLKSRMDALNSKWQFDKRYWTEGLNALGTVGNAVGSVGNLRKPGARNTYVYGNRTYNRY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ttagacaaat acatttgcct gagcatcata aagagatttc tggctctgaa gtgtctgaac 
       61 attagcattt gtttccttag tctgattaga aatctgaaga gcagaggcca gagtgttgct 
      121 aagacctgaa aagtcctgac gttgcataga cagcggagaa gatgcagatg caggtgtaga 
      181 agaccctgaa gactgagcgg taccagcgct tccaccattc atcattaaat atggatttaa 
      241 accagcttct tccaagcgag aacgctgagc agacgcagaa ttatattcat tagtcttgtt 
      301 ccacatatcc agctgaaact gccgggcctt ttcagcctcg gcagcattaa actcattgtt 
      361 catccgattg acagccatat tcgcattatt agctttattt gtagaaacaa cattaccaat 
      421 agaagacgct atatcaccaa caacaggaat aaaatcaaga agtcccataa ctattcagat 
      481 tgagagtcag aagaattagg ttcttgagga gtgccagcag actcccgctc aagagcaata 
      541 cgagaagctt cgtcctcaat agatttagcc tggtcgataa gatactcact ccacgcaatc 
      601 aactcagaag gtgattgaag atgacgggat ttaatagtat ctagaatctg agcatcagac 
      661 ataagatcca tttcagattg aagaccacta gatttaggac gatgcatctc aatcatagat 
      721 ttaacaaatc cagttccata tttcttagcc atatcagcag catgaagtag catactaaca 
      781 tcagaacgga cacgaacagc ttcattttcc tcggtgccga ctttttcaaa acgaaaaggt 
      841 tcggtaggaa gctcttccaa aacaatatca ggctcagaag aggcgcaaat aggacaaatc 
      901 tgaacctctc gaataggcgt acattttcgg taacctgggc caaaacatgt acaagagttt 
      961 ttttcagttt ctctcataat caaaaaattt taataaggca caccgtcagc agacaatggg 
     1021 cgagtaacat aacaaccaac attacaattc actaacaatt gatccgtttc ccatgtagag 
     1081 tcgaccttga cagcaaaaag atcatcaaga gtattagggt tgactttaaa aaatggccaa 
     1141 gtaacaccct tataggtaga taaagaatca ccgaacaaag aataaagaaa tgaatcatca 
     1201 ataggggcaa cccaatcttt gagagtagtg gtaaatgcac cgtgtatacg atcaatctta 
     1261 gttttccaat tataatagcg aggactatag cccaaaatct tatccgcaga atttacattg 
     1321 gaatatagac tagaattcat taactcaaca gcaggaactg attccattcc aatattatca 
     1381 aattcaggaa tagggagatc ttcgacagat gtaacaagat tttgaccgtc ggggccacta 
     1441 attgagtaat ccaacagagg aacagcatgg tatatacaca taagtatata atagccggaa 
     1501 cctgtattaa atgtcataga tccttgacca gatccaacac ctttaccata aatatatgcc 
     1561 tgagaagagt catttccggg acctggaagg aaattattaa caacttcaga aatatcaaga 
     1621 ttacgggcaa cacctccaat atacttagcc atatgagcct cagattgagg aacgctaact 
     1681 ccaaaatgag ctttaatctg atcacgataa ttagtatcga ctgattgagt aatttctttc 
     1741 catttttgaa gagcttcagc ttggcgaagg gcaagaacag aaaatttcaa ttttaaatca 
     1801 gaagattcgc ctaatacagc ccaaagatta gaatctgcac gaacagaaat agaatcaggg 
     1861 ttacgagggt aaatctgcgt agtcttatca gaagaaccat tgtaagattc agaggaagtc 
     1921 tgaaattgtt taaatgtacc agaatcattg acaccgtcat acgcaccaac aggaatttta 
     1981 gaaccagatg cagaaatagt gccaagatct actactgcaa ggtcgccaaa ttgagaattc 
     2041 ggaagaattc ccataaattt atccttattc caattagcgt agcgaagaga aaataaatta 
     2101 tctctcttcc aatagtcact actagcagga atcgcggcag caagatccga agaaccaaat 
     2161 aaattaccag aacctcgata ccagtcaaag ttataagatg taggatcagc attttcccat 
     2221 tgagaccaac gaaaaaagtc ttgatagatc ttttgataag ttgcaagaaa gaataaatta 
     2281 acagccaaat taacattata cttttgagaa taaacagcag aatcagccgt cgcaactctc 
     2341 ctattccacc aacgattagc attagtacca atccaatttg cagacttatc aacaacatta 
     2401 ccgtaatcca acatcgacaa caatttatga ttaacatctc ctcgattata accaaaaata 
     2461 ttaccaaatc caggagaaac agatacctta ttgcctaaac tagcaggatt tccagaagca 
     2521 aatttcaacg caaaactaag gtcagacaaa gaacaatagg gaaggtctcc cttaacagta 
     2581 agattagtta ataaatcttt agactgaata ggagcctttt ctcccatttg aatcacagca 
     2641 gaatcaaatg atttccaaat aagatcacaa ggaaccgcaa aaaaatcaaa atactcacga 
     2701 atacgagtat acgcagaagt ttgtacagga cgagtacgag taaaatactc aagattaatt 
     2761 ctgtacgtac aattaggaat cgcaaaatcg gtccacacag gcaacaattc tccaactttt 
     2821 gccgtaaagc aatttttagc agaaatgtca tgaccagatt tatgaggtct gttctgcaac 
     2881 tccttaagac cagtaaaatg tgccataata aaaaaattaa ttattcaaca acaaaccact 
     2941 taaatcatta aattccttat gtttaacctt atccacgcac gccttccgat taatggcggt 
     3001 taattcttta aggaattctt gagataaagt ggaatcatac atataatcac gtttgtcaaa 
     3061 ttcagagaaa gattccgtta attcataacc acctttgtcg acggttttaa atctagaaac 
     3121 aaatcgagaa ttaaaaacct catttaaagc agtatgatga aacaaaaatg aacgttgcct 
     3181 atcattacaa ttctccaaaa atgcgaagta gtcagaaaga cgacgccggg caaattcatt 
     3241 ccaataatta tcagaaaaat tcataagatc ataaatagga cctcggcgac aagaatctac 
     3301 gtatgcaaat aaattccaaa atctagcagt gcgaataacc gtgttaaaaa gtctgtaaaa 
     3361 tttactataa atttgatcat aagtaagaca atgccaatac ttacgattag gagcgtcaag 
     3421 acgaacagta gtaattatca gctcatcatc aaaagaaata gatctcttat cttcacggtt 
     3481 taagaaaaaa tcagtatacg catgagcaag ttgagatacg ggggatacag atttgtcata 
     3541 agttatgtcc aaatatccgt aacgaacgag cctctcgggc gtgaagaacg cagctgaaaa 
     3601 tacgaaagca ctgctatgtg cagatttgca aacaagattc gagaatctgg ggaatactgt 
     3661 atgtttatac gaccgtgaag ggtagatttg tttagcttta ccattaaaag agatgctttc 
     3721 accattaagg agaagagagt acattttgtc aaattcatgt atcgtggctt gagtgggaaa 
     3781 gacataattg tttccatatc cttttgagtg gagggaacgt gctctaatct ccttgtgctg 
     3841 gagatataat gaaggtaagc atacattact attaacatac gacgcaacgt aggaagaaga 
     3901 gcctcctcgc gatagttcac aagttgtacg accgtaggac caactctcag atacaaattg 
     3961 ctgtataacc gaggtgagtt catccgagtt aaagaataat aacaaatgcc aatgcggacg 
     4021 atatgtccga ggaccatatt ctgatacacc gtaaaaacgt atttcttcat tatatttatt 
     4081 ttttgaatga aatcttagtc ttttaagaaa tttctgacaa tcagaagtat tacaataagg 
     4141 gatgcgatta tcacaatctt caaaacgagg ataaacaaca catttacgaa gaaagtcata 
     4201 acgaccatga ctcttaacaa taatatcttg atattcaaaa gaagtcatag gatgagtaaa 
     4261 ttcaaataaa ggatcttcta taatcctatc ctttccatta ggaacaagaa tgcgcaaatt 
     4321 cctattaaca gaagagaaga aataattaga acgattatta tccaaggaat ctatggattt 
     4381 aagttccata taaggaaggt attgatcttc ataagacagc caaacaaaat agcaatattt 
     4441 aaaatttgaa gcaatattca tagctaatgc ggtatcacga tttgacttat ttttcaaaca 
     4501 cgaataacaa tgaccacaag gggaatatat aaaatcattc gtatacttat tcaacacctt 
     4561 gacaggatga agacactcag caagaagata cttatctatg acttcctgat taatcataac 
     4621 tattgttcag aagaaatagc aaatgtatca atagaatcaa tcagcaaaat attatccgaa 
     4681 gataatttcg tctctacaaa tgaagagata tctttccggc gaacaacaaa aatctgacct 
     4741 tgagactgag aattcttagg cttaacagaa actagtacaa attcattttc cataattgta 
     4801 aattttaacg attaatactt attttagtag aatctacaga agatgtagat gtttgttcag 
     4861 tagactgaga actattacta ttatacttag aaatagacat agatgcagta catgactgta 
     4921 caaatagaca agtgataaca ccaataataa aagtcgagat aagtttaact atctcaatcc 
     4981 attgttgagg agtaattttc ataactcaga atattgaaat gataaactag caataacgta 
     5041 tttatttaaa caaggtttaa ccaagggatg cttggaaaca tattccacag catgaaaaag 
     5101 agtgcagcct actctgtaat caagagcaag agaaacagca gacaaatgct ccaaacctgg 
     5161 agatttagga gcaaaaacaa cgacaatcga agaaatatac ataatcacaa catttttaat 
     5221 attacaaaca gtattatgcc acaaagaaaa agaatatatt ttaaaaacac aattttttca 
     5281 gagttttttt tgagaaaata ctgtcattta tctaatataa ggcaagaagt aagagttttc 
     5341 ggcggagatt aaccgaaaac ccttgcggga taaatgaaat aggctttcgc cagtataaag 
     5401 gtttttttag ggggtatata gggggtgaag tgcagaggag tagtaaaggg cagcgtgtca 
     5461 ctgaaacagg ataaaggcaa agctgcaccc acacttcgtg cgtggtgtgc ggctccgccg 
     5521 atatcaaggt gctagacgct aagggacgtt accacgtcca gtttcctgag gtccgttcag 
     5581 gccacggagg ccactattca gagaaaagga tattcggaca ataggggctc ctagacttca 
     5641 catacaggca caaataagag gcaaaagagt catagatctc caaatacatt ttcgacttta 
     5701 aaaacaaacg gccataatga tcataaataa atttcttgga tttacgatta aaattagatt 
     5761 tagtaccgta ataagtaaat actacttgag gtttacaaaa gccggtttcg accaaacaat 
     5821 aaaaattctt tttcataaca tattgctttt tgattacaat acaaagataa ggataattat 
     5881 tataattagc taatcataat aattaataaa agttaacaaa atgttaaaaa aaaaattccc 
     5941 cgggtacccc ggggaataag aaatgaaccg actatcaata acgattataa gtcctattac 
     6001 catatacgta agtattacgc gcaccaggtt tacgaagatt acctacgcta ccaacagcat 
     6061 ttccaacagt accaagagcg ttaagacctt cagtccaata acgtttatca aactgccact 
     6121 tggaattaag ggcatccata cgagacttca atacagatgc cggaacataa gaatcctcac 
     6181 cgtatttaaa cggagaatta atatcatagg acgcagagta ttcagcatta agggctttta 
     6241 tataaccgtc agcagtatct tctgcagctt tattattaat ctgcagacct ttagcctcgg 
     6301 ccatcattag aatacgctta gtaatttcag atttggcttg ctgatatttt aaatgaccag 
     6361 aggccatagc atcataatac tgggccgcca ttaaatccaa ttgaaggcgc tgtccttcgt 
     6421 ccagatagtt attaataatt cttttactct tattatccaa caagg 
//
