FEATURES             Location/Qualifiers
     gene            10..216
                     /locus_tag="Alpa_01"
     CDS             10..216
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MEKKLRFVNVVACSNLGTRIRLTLSSETDDLRQLVADALIRIGQYGSSQETFLVQHIDSAPPLYDMRE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            322..510
                     /locus_tag="Alpa_02"
     CDS             322..510
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="VQPKDGGKPSNPMLVNANGSDLCCLVGEFLCTGDKVLIFQSVTEYKATPCETDPCVESFKKE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            749..2512
                     /locus_tag="Alpa_03"
     CDS             749..2512
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MADKVRNFFNRCEHPRIIKNKYTGEPVYVECGSCPHCLISRSDAKRNLCDYEKWNRKYCYFVTLTYNSQYVPKMALVPITDYEFDYPIGKNWPCVKTQLHMRLMLDPRVKKTEMFSQETRMRARRPVGDSLINMFTCKVNKPYIDEHLKAIFDSCAAAVEFRKNYKPTYQSPARPYILRTIPRISKLQKFNDVQREELVWLSPEKVEMLKKKSKCEGDNNAFPQFKGLLKYINYRDYQLFAKRFRKYLFTRIGSYEKISSYVVSEYSPKTFRPHFHILFFFDSDEVAKNIRQAVFQSWKLGRVDTQLARDSAGSYVSGYLNSVVSLPGIFTDVSFTKNKSRFSKLFGYESFRQTIKTPEQAIERLSERILFVRNGKPCEFTPPFSYISRLLPRFVPYSSNFVVETRTVLRSIRGVLQLFRRNEPFKKETPTNISEFVHTYTVTLYEKYGYCYDTLPECLRVYLSYTRSVKEIHYFTDKLKNKLCRPLYIYRIWESLGLSDDCIISLSDEYMSRCRSMSLEKQLSIQQEMFEREGYSDELLSLFYINKPQKKVNNRYFQEWKDKNYYEVHYIRVKHKKLNDENNVFLE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_004291031.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /db_xref="eggNOG:bacteNOG07343"
                     /db_xref="eggNOG:bctoNOG24068"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2527..2730
                     /locus_tag="Alpa_04"
     CDS             2527..2730
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MKITPQQWIEVVKLISTFIIGLITALCIHSCTASMSVFWKNSNSNQESQQTTRQSVDSTRIDVQPNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2734..4509
                     /locus_tag="Alpa_05"
     CDS             2734..4509
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MSLFSLKDIRNHPRRSAFDLSSKVAFSAKSGELLPIKWYFTMPGDKFTLKRQHFTRTQPVNTSAYTRIREYYDWFWVPLHLLWRNAPEVISQMQSNVQHAGTQTTALTLGNYLPTISSSQLSAVCSRLSGKTNYFGYDRSDLSYKLMQYLRVGNSGQSSVNFGTSVPVSDTSYTQAYRFNLDLSIFPFLAYKKFCQDYFRYSQWQDSSPYLWNIDYFTGTTSHLFANLPSPTDPYWNNNTLFDLEYCNWNKDIFMGILPDAQFGDVSSITVGNVTNTVPVSLQGLSNAQVHVGSKVSSSSEEYNLLVTEGGSSDQLVVNFAGRSGFSFDVLALRRGEALQRWKEISLNVPQNYRAQIKAHFGVDVGENMSGMSTYIGGDSSSLDISEVVNTNLQSGNSQSEAVIAGKGVGSSQGSEKFEARDWGVLMCIYHNVPLLDYVSSAPDPQFFVTQNTDLPIPELDSIGMQSVPVSMYSNSDKELVTGFSSADFTMGYLPRYYSWKTSYDYVLGAFTTTEKEWVAPITSVIWKRMLIGLTSSSGSFNYNFFKVNPSILDSIFQANANSKWDTDPFLINCAFDVKVVRNLDYSGMPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4512..4973
                     /locus_tag="Alpa_06"
     CDS             4512..4973
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MKKKEYIDHIFNGSFDVLHTKVPVQDKLMQLSTFVNKDGSIAISSDISLIFNQQRLENKLTASELREYIQRYTPNKSVYTSQLDDDTLLNTLKSRHIQSLSEMRSWAEYCMENYDSLIKDAEEKARVAAEENAAAEGNAAAGASSSSASSTSE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:INSD:WP_004291033.1"
                     /inference="similar to AA sequence:INSD:WP_008775337.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4976..6112
                     /locus_tag="Alpa_07"
     CDS             4976..6112
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MAFKDFASGLFGGLGSVISGAIGAKTTADTNKTNLKIAQMNNDFNAREAQKARDFQLDMWNKENEYNSASSQRERLENAGYNPYMNEAQAGTATGMSGTSAASAAGAAPQIPYTPDFQSVGVNLASALKMMSEKKKTDIENLNMSDLLRSQIWQNLGATDWRNASPEARAYNLSQGRRAAELGMASLEENLSNQRWSNNLLVANIANSLLDADTKTILNKYLDQQQQAELNVKAANYEYLVMSGQLKRQEVNNLIAEEIETYARANGYNLQNRILRETSDGLIRATNNTNFYFGSYYHSRAFNAGADAFHDSSILRSRAGSASESYKQSAFDTKLQPWREALNSTNMIFNGIGSGLDSYTNFQNGRYYRGNKGRFSNR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 23 and 24 "
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_021963491.1"
                     /inference="similar to AA sequence:INSD:WP_004291034.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 ttttagatta tggaaaagaa acttcgattt gttaatgttg tggcgtgttc caatttaggg 
       61 acacgtatcc ggttaactct ttcttctgag actgacgatc ttcgtcaact tgttgctgat 
      121 gctcttatca ggattgggca atatggttct tctcaggaga catttttggt tcagcatata 
      181 gattctgcac ctcctttgta cgatatgaga gaatagttcc ccgcgtggat ttcgcgcgct 
      241 taatcgcggg tttactttta ttatatttat attactaaca atttaaattt taattttatg 
      301 attatgaaac ttttagtgac tgtgcagccg aaagacggcg gaaaaccttc taacccaatg 
      361 ttagttaatg ctaatggaag tgatttgtgt tgtcttgttg gcgagtttct ttgtactggc 
      421 gataaagtct tgatttttca gtctgtaact gaatataagg ctactccctg tgaaacagac 
      481 ccctgtgtag aatcttttaa aaaagaatag tttttctttt tcttcttctg atattgcatt 
      541 tcgttgacaa atcgtataga ttgcaccaag cgttattgta ttgaaaattg ttaatatcgc 
      601 gtgtgtgcga agcttgcgta gcgcgcgcgt gaatttaata atttttgata caatgttgat 
      661 tggtgttttc tatgcgattt acctatcttt gcaatttcat aagattaaaa gtaaaagtat 
      721 tcgtccctga atttaaagac gacggtatat ggctgataaa gttcgtaatt ttttcaatcg 
      781 ttgtgagcat cctcgcataa taaaaaataa gtacacgggt gaacctgtat atgttgagtg 
      841 tggatcttgt ccgcactgtt tgatttcgcg ttctgatgcg aaaagaaatt tatgtgatta 
      901 tgaaaaatgg aatcgcaagt attgttactt tgtgacattg acttataatt cgcagtacgt 
      961 cccgaaaatg gcacttgttc ctattacgga ttatgaattc gattatccta taggtaagaa 
     1021 ttggccttgt gttaagactc agttgcatat gcgtcttatg cttgatcctc gtgtcaagaa 
     1081 aacggaaatg ttttctcaag agactcgtat gcgtgctcgt cgtcctgttg gtgattctct 
     1141 gatcaatatg tttacttgta aagtaaataa accttacatt gatgaacatt tgaaggctat 
     1201 attcgattct tgtgctgctg ctgttgagtt ccgaaagaat tataagccta cgtatcagtc 
     1261 tcctgctcgt ccttatattc ttcgcactat tcctcgtata tctaagttgc agaaatttaa 
     1321 tgatgttcag cgtgaggaat tggtttggct ttcccctgaa aaggttgaga tgcttaaaaa 
     1381 gaagtcaaaa tgtgaaggag ataataatgc ctttcctcaa tttaaaggac ttcttaaata 
     1441 tataaattat cgtgattatc aactttttgc gaaacgtttt cgcaaatatt tatttacaag 
     1501 aattggttca tatgaaaaaa tatcttcata cgttgtttcg gagtactctc ctaagacatt 
     1561 ccgcccgcat ttccatatct tatttttctt cgactcggac gaagtcgcca aaaatattcg 
     1621 acaagctgta tttcagagtt ggaagctcgg tcgtgtcgat acgcaacttg caagggattc 
     1681 cgccggtagc tacgtatcgg gctatcttaa tagcgttgtg tctctccccg gcatttttac 
     1741 ggacgtctca tttacaaaaa ataagtcgcg gtttagcaaa ttatttggat atgaaagctt 
     1801 tcgacagaca attaagacac ctgaacaagc aatcgagcgc ctatctgagc gaatactctt 
     1861 tgtccgtaat ggcaagcctt gtgaattcac tccccccttt tcgtatatct ctagattatt 
     1921 gccacgattc gtaccgtaca gcagtaattt tgttgtcgaa actcgaacag ttctgcgttc 
     1981 aatccgtgga gttttacaac tctttagacg aaatgaaccc tttaaaaaag aaactcctac 
     2041 aaacatatcc gaatttgttc acacctatac agtgacattg tatgaaaagt atggatattg 
     2101 ttatgatact ctccctgagt gtcttcgtgt ttatctttct tatacgcgtt ctgttaaaga 
     2161 gattcattat ttcactgata aacttaagaa caaactttgc cgtccccttt atatatatcg 
     2221 tatttgggaa tctcttggtc tttctgatga ttgcattatt tctttatctg atgaatatat 
     2281 gtctaggtgt cggtctatgt ccctagaaaa acaattgagt attcagcagg aaatgttcga 
     2341 gcgtgaaggt tattcggatg aacttttgtc tttgttttat attaataaac ctcaaaaaaa 
     2401 agttaataat cgttattttc aggagtggaa agataagaat tactatgaag tacattatat 
     2461 tcgcgttaaa cataagaaat taaatgatga aaataatgta tttctagaat aattatcttt 
     2521 atagttatga aaattacacc tcaacaatgg attgaagtag ttaaattgat ttctactttc 
     2581 attattggtc ttattacggc attgtgtatt cattcttgta ctgcgtctat gtctgtattc 
     2641 tggaaaaata gtaattctaa tcaagagagt cagcagacta cgcgtcagtc tgttgattct 
     2701 actcgtattg atgttcaacc aaatttttaa tttatgagtt tattttcgtt aaaagacatt 
     2761 cgcaatcatc ctagacgttc ggcatttgac ctttcgtcta aggttgcttt ttctgcaaaa 
     2821 tcgggtgaac ttcttccgat taaatggtat tttacaatgc ctggtgataa atttacattg 
     2881 aaacgtcagc attttactcg tactcagcct gttaatacct ctgcgtatac tcgtattcgt 
     2941 gagtattatg attggttttg ggttcctttg caccttcttt ggcgcaatgc tcctgaggtt 
     3001 atttctcaaa tgcagtctaa tgttcagcat gcaggtacac agactactgc gttaactttg 
     3061 ggtaattatc tgcctactat ttcatctagt caactcagtg ctgtctgttc acgtttgagt 
     3121 ggcaagacaa attattttgg ttatgaccgt tccgatcttt cgtataagtt aatgcaatat 
     3181 cttcgtgttg gtaattctgg tcagtcttct gttaattttg gaacttctgt acctgtttcg 
     3241 gatacttctt acactcaggc ttatcgattt aatcttgatt tgagtatatt tccgttcttg 
     3301 gcatataaga aattttgtca agactatttt cgttattcac agtggcaaga ttctagtccg 
     3361 tatttgtgga atatagatta ttttaccggc accacttctc acctatttgc taatttgcct 
     3421 tctcccaccg atccatattg gaataataat acattatttg atcttgagta ttgtaactgg 
     3481 aataaagata tcttcatggg tattcttccg gatgcacaat tcggtgatgt gtcatctatt 
     3541 actgttggaa atgttactaa tactgttcct gtttctttgc aagggttgtc taatgcacaa 
     3601 gtgcatgtag gttctaaagt ctcatcttct tctgaggaat ataatctgct agttacggaa 
     3661 ggtggttcat ctgaccaact tgtagttaat tttgccggtc gttcaggatt ttcatttgat 
     3721 gttcttgctc ttcgtcgtgg tgaggctctt caacgttgga aagaaatttc tttgaatgtt 
     3781 cctcagaatt atcgtgctca gattaaagca cattttggtg ttgatgttgg tgaaaatatg 
     3841 tcaggtatgt ctacttatat cggtggtgat tcatcgtctc ttgatatatc tgaggttgtt 
     3901 aataccaatc ttcagtctgg taattctcag tctgaggctg ttattgctgg taaaggtgtt 
     3961 ggctcttcac agggttctga aaaatttgag gctcgtgatt ggggtgtatt gatgtgtatt 
     4021 tatcataatg ttcctttatt ggattatgtg tcttcggctc ctgacccaca attttttgtt 
     4081 actcagaata cggatttgcc tattcctgaa cttgattcta ttggtatgca gtctgtaccg 
     4141 gtttctatgt attctaattc tgataaagaa ttggttactg gattttcttc cgccgatttt 
     4201 actatgggtt atttgcctcg ttattattct tggaaaactt cgtatgatta tgtgctaggt 
     4261 gcatttacta ctactgagaa agaatgggtt gcgcctatta cttccgttat ttggaaacgt 
     4321 atgttgatcg gtttgacttc ttcctctggt tcatttaatt ataatttttt caaggtgaat 
     4381 ccttctatac ttgatagtat ctttcaggct aatgctaatt ctaaatggga tacagaccca 
     4441 tttttgatta attgtgcttt tgatgttaaa gtagttcgta acttggatta ttccggaatg 
     4501 ccttattgat tatgaaaaag aaagaatata tagatcatat ttttaacggt tcttttgatg 
     4561 tcttgcatac aaaagtgcct gtacaagata agttaatgca gttgtctact tttgtaaata 
     4621 aagacggttc tatcgctatt tctagtgata tttcgttgat atttaatcaa caaagattgg 
     4681 agaataaatt aactgctagt gaattacgtg aatatattca gcgttatact cctaataagt 
     4741 cggtatatac ttcccaattg gatgatgaca ctttattgaa tactcttaaa tcaagacata 
     4801 ttcaatcgtt gtctgaaatg cgatcatggg ctgaatattg tatggaaaat tatgattcat 
     4861 taattaaaga cgctgaagaa aaagcccgtg ttgctgctga agaaaatgct gctgctgaag 
     4921 gaaatgctgc tgctggtgct tcttcttctt cagcatcttc aacatctgaa tagttatggc 
     4981 atttaaagac tttgctagcg gattatttgg tggtcttggt tctgtaattt ctggtgctat 
     5041 tggtgctaaa actacggctg atactaataa gaccaatctt aagattgccc aaatgaataa 
     5101 tgattttaac gctcgtgaag cacaaaaggc ccgtgatttt cagttggata tgtggaataa 
     5161 ggaaaatgaa tataattctg cgtcctctca gcgtgagagg ctagagaatg ctggttataa 
     5221 tccttatatg aatgaggctc aggctggtac ggctactggt atgtctggca cttctgctgc 
     5281 atctgctgct ggtgctgctc ctcaaatccc atatactcct gattttcaat ctgttggtgt 
     5341 taatttggct tctgcgttga aaatgatgag tgaaaagaaa aagactgata ttgagaatct 
     5401 taatatgtct gatttgctac gttctcaaat ttggcaaaat cttggtgcca ctgattggcg 
     5461 taatgcgtct cctgaggcgc gtgcgtataa tctttctcaa ggtcgtaggg ctgccgagct 
     5521 tggcatggct tccctcgaag aaaatttgtc taaccagcgt tggagtaata atcttcttgt 
     5581 cgctaatatt gcgaattctc ttcttgatgc tgatacgaag actattttga ataagtatct 
     5641 tgatcaacaa caacaggctg aattaaatgt taaggcggct aattatgaat atcttgttat 
     5701 gtctggtcaa ctgaagaggc aagaagtcaa taatcttatt gctgaggaga ttgagactta 
     5761 tgcgcgtgct aatgggtata atcttcagaa tcgtattttg cgtgagactt cggacggttt 
     5821 gattcgtgct actaataata ctaattttta ttttggctcg tattaccaca gtcgagcatt 
     5881 taatgctggt gctgatgcat ttcatgattc gtctatattg cgttctaggg ctggttctgc 
     5941 ttctgagtct tacaagcaat ctgcctttga tacgaagttg cagccgtggc gtgaggctct 
     6001 taattctact aatatgattt ttaacggtat tggttccgga ttggattcct atacaaactt 
     6061 tcaaaatggc cgttattatc gtggtaataa aggtagattc tctaatagat agtttgtttt 
     6121 cgttttcgta ttgtatattt taatattgtc ttgatgcact gacttgtgat aagtcggtgc 
     6181 attttatttt aatagctgtt ctcttttgtg cgctagcaaa tcgggtgtca catctagccc 
     6241 gattccacct cttctcgtcc gagattggca aaagtgacac caataaaaat gcaaaatatg 
     6301 ttgtataaca tataatttaa tttggttctt tgtttatatc cctttatctt tgtagtgtaa 
     6361 taaaaaaaga tatgattatg aaaacagaaa gaaaatttac ttggtgcgtt cgattttata 
     6421 atgttaagac aggcgcaatt gac 
//
