FEATURES             Location/Qualifiers
     gene            78..257
                     /locus_tag="Alpa_01"
     CDS             78..257
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MHRSFTGLPQLGQQFLLVDPNAVNQVFSVTEYTDKIFGYVKFNATARLPISRVAIPRLD"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65712.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            533..856
                     /locus_tag="Alpa_02"
     CDS             533..856
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MARNTKPDYKCVECNFDVQKDFERTKPNLGLTPQQVAEMAKRGIPVSPMNVNFIDVNGDASWNIEPQFRRDMDMATAWEMEKASQRKALQVLRQKKFGDKYINPQNN"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            859..2007
                     /locus_tag="Alpa_03"
     CDS             859..2007
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MPSPAAGAAAGAAAGSVVPGIGTAIGAIGGAAISAIGNWFGNRSNRKASREAFERESKFAREERLAQQQWIEQMYEKNNSYNSPAAQMQRLKDAGLNPDLMYSRGDVGNATAPEAPAQAPTPRYNVIPTNTYGQTAQIAADAGLKAAQARLANSESKKTDTEESLLTADYLLRKARTESDIELNNSTIYVNHELGQLNHAEAEVAAKKLQEIDVAMSEARERISTMKAQQSQIDENMVQLKFDRYLRSKEFELLCKRTYQDMKESNSRINLNAAEVQDMMATQLARVMNLNASTYMQKKQGILASEQTMTELYKQTGIDISNQHAKFNFDQAKNWDSTERFTNVATTWINSVSFAVGQFAGATTSLQKGGFLGKSMSPIGFR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:INSD:CDL65715.1"
                     /inference="similar to AA sequence:INSD:WP_024568108.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            2291..3562
                     /locus_tag="Alpa_04"
     CDS             2291..3562
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MPSGTYHGSVLHVNKNHVNKNNIDKYTIVNPATGETFPMFLIVPCNKCALCNEKKAQQWSFRALCESYTSNKQAYFITLTYNNEHLPKNGVFPEEIQLFFKRLRTKLDRRGISHNLRYIAVSEYGHWSKRPHYHIILWNFPDNFESAYSRLTLIESCWRRPTGEYHPDGSPVTRSIGFAYCVPVINGGINYVMKYMGKRECAPEGMNSTFMLASRKNGGIGSAYAEQLRAFYEQQPDTCDMSVINIYTGQPLTTMLPRYYRMKFMPSTSMCYDSNFIKYFKDTVRWFEIARYLHKQYKLPFKFTYPEEYLRLVRMTGKTPYYDPSKTIINDTFIKYYLPQFCSQTVYEDLYYKAFSYGLDCLSTALVFFDSSQVLKHEKSLHMNSLQQAAINARMSMREELNLKKASYDVRVKMNKHYRKEKI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:CDL65713.1"
                     /inference="similar to AA sequence:INSD:WP_005867316.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3655..3828
                     /locus_tag="Alpa_05"
     CDS             3655..3828
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MEKYIIFYHSAFGYDNVRVDAESFSDAVSIADSISSKFGATIVGVCLEVLLNNWYHE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            3821..4000
                     /locus_tag="Alpa_06"
     CDS             3821..4000
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MNKYTFIFEIIWRDPKTGQFKTSEYRKKNQMSIVDARSYARRLVNIQNVLSVRFYKEMC"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4002..4166
                     /locus_tag="Alpa_07"
     CDS             4002..4166
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="MYKGVLKFIKRETLHEEFVISIGIFNRPSTAERFRKQLQDVNVGYDVLLILEKL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            4163..4360
                     /locus_tag="Alpa_08"
     CDS             4163..4360
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_08"
                     /translation="MKITPNQWIELVKLISTFIIGVITALTVQSCTASMSVFWKNQNSKQDSQQTTQQEVDSVTIKPQF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4870..5016)
                     /locus_tag="Alpa_09"
     CDS             complement(4870..5016)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_09"
                     /translation="VVVILNDNEAEVYLPIAKLLDNRKTVDSSLEGLTTQPIVLTLPTVPVH"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cgtaccgtgg tatgaatatg tagctaagta tgataatgca cacggcctgt tccgtactga 
       61 tatgaaaaat tttgtttatg catcgctcat tcactggact tcctcaactc ggtcagcaat 
      121 ttttgcttgt tgaccctaat gctgttaatc aggtctttag tgttacggaa tataccgata 
      181 agattttcgg ttacgtcaag tttaatgcta ctgcacgatt accaatcagc cgtgttgcaa 
      241 taccccggtt agactaagaa aataattttt tctttttttc ttccgacatt gcatctttaa 
      301 ggcatgtgtg tgcgacttgc ttcaagggtt ctagtagtaa taattgttaa atattagaac 
      361 cttgttataa tatttaatca attattagtg ctaggttcat tgaacttgtc gcgcgcacat 
      421 acctaccttt gcaatatcgt aagattaaaa gggaaaagta ttttccctct gcgtgaaacg 
      481 caaatcaatc gcaattttat tgcgtaaagt ataaatttta aattttacac ttatggctag 
      541 aaatacaaaa cctgattaca aatgtgttga atgtaatttt gatgtacaaa aagattttga 
      601 aagaactaaa cctaacttag gtttaacacc tcaacaagta gctgaaatgg caaaacgtgg 
      661 tattcccgtt tctcctatga atgtgaattt tattgatgtt aatggtgatg cttcttggaa 
      721 tatagagcct caattccgtc gtgatatgga tatggctacc gcttgggaaa tggaaaaagc 
      781 ctcccagcgt aaagctcttc aggttcttcg tcagaagaaa tttggtgata agtatattaa 
      841 tcctcaaaat aactgattat gcctagtcct gccgctggcg ctgccgccgg cgctgctgct 
      901 ggttctgttg ttccaggtat cggtactgct attggtgcta ttggcggagc tgctatctcc 
      961 gccattggca actggtttgg aaacaggagt aaccgcaaag cgtctcgcga agccttcgag 
     1021 cgagaaagta aattcgctcg tgaagaacgt ctcgcacaac agcaatggat tgaacaaatg 
     1081 tatgagaaaa ataactctta caattcacct gctgcccaga tgcaacgttt gaaagatgcc 
     1141 ggattaaatc cggacttgat gtactcccgt ggtgacgtag gaaatgcaac cgccccagaa 
     1201 gctcctgcac aagctcctac accgcggtat aatgtgatac ctacgaatac ttacggacag 
     1261 actgcgcaaa ttgctgctga tgctggattg aaagctgcgc aagctcgttt agcaaattcc 
     1321 gaaagtaaga aaacggatac tgaagaaagt ttgcttactg ctgattatct gcttcgtaaa 
     1381 gctcgtacgg aaagtgatat tgagttgaat aattctacta tttatgtaaa tcatgaactc 
     1441 ggacaattga atcatgctga agctgaagta gctgcaaaga aacttcagga aattgatgtt 
     1501 gctatgtctg aagctcgtga acgtattagt acaatgaaag ctcaacaatc acagattgat 
     1561 gagaatatgg ttcaattgaa atttgatagg tatctgcgtt ctaaggagtt tgagctcctt 
     1621 tgtaagagaa cgtatcagga tatgaaagag agcaattctc gtattaacct taatgctgct 
     1681 gaagtgcaag acatgatggc tacgcagttg gctcgtgtaa tgaatctgaa tgcgtctact 
     1741 tatatgcaaa agaagcaagg tatattggct agtgaacaga ctatgacaga gctatacaag 
     1801 caaaccggta ttgatatctc gaatcagcat gctaaattta attttgatca ggctaaaaac 
     1861 tgggattcaa ccgagcgttt tactaacgtt gctacaactt ggattaattc cgtttcgttt 
     1921 gctgtcggtc aatttgctgg tgctactact tctttgcaaa aaggtggttt cctcggaaaa 
     1981 tctatgtctc ctataggatt ccgttaatga ttagccgggt gtcccccggc ttttcacgat 
     2041 tttttccaaa atcgtaccgc cttaactcga taagtatgta gtaactgaca caccttctaa 
     2101 atcagtgatt tatttccgcc ggaaaagtta cgatttgccc taagtgcggc ttccgtccgc 
     2161 tttactattg aatcttccgc gaagcggaaa aatttttttt gaaaatatga acaatatata 
     2221 ttgtgaagac cctaaagtaa tatggcaccc ccacgcttct aagctgatac aaaagtatcg 
     2281 tacgtttaca atgccctccg gtacatatca tggttctgta cttcatgtta acaaaaatca 
     2341 tgtcaataaa aacaatattg ataaatatac gattgtaaat cccgctactg gcgaaacatt 
     2401 tccaatgttc ttgattgttc cctgcaacaa gtgtgctctt tgtaacgaaa aaaaagctca 
     2461 acaatggtcg tttcgtgctc tctgtgaatc atatacctct aataaacaag cctactttat 
     2521 aactcttact tataacaatg aacatttacc gaaaaacgga gtatttccgg aagagattca 
     2581 actctttttt aagcgccttc gtaccaaatt ggatagacgt ggcatttctc ataatcttcg 
     2641 ctatattgca gtttctgaat atggacactg gtctaaacgt cctcattatc atattatatt 
     2701 atggaatttc cctgataatt tcgagtcggc atattcgcgc cttacgctca ttgaaagctg 
     2761 ctggcgtcgt cctactggtg agtaccatcc tgacggatca cctgttacta ggtctattgg 
     2821 ttttgcttat tgtgtccctg ttattaatgg tggtatcaat tatgtcatga aatacatggg 
     2881 taaacgtgag tgcgctcctg aaggtatgaa ttctactttc atgcttgctt cccgcaaaaa 
     2941 tggtggtatt ggttctgcct atgctgaaca acttcgcgct ttttatgagc aacaacctga 
     3001 tacatgcgac atgtccgtta tcaatatata taccggtcaa cctcttacta ctatgctgcc 
     3061 tcgctattat cgtatgaagt ttatgccttc tacttcaatg tgttatgact ctaattttat 
     3121 taagtatttt aaagacactg tgcgctggtt tgaaattgct cgctatcttc ataagcaata 
     3181 caagcttccg tttaaattta cttatcctga agaatatctt cgactcgtcc gtatgactgg 
     3241 taaaactcct tattatgatc cttctaaaac tattataaat gatacgttta taaagtatta 
     3301 tcttcctcaa ttttgttcac agactgttta tgaggatttg tattataaag cctttagcta 
     3361 tggtcttgat tgcttatcta ctgctcttgt gtttttcgat tcttctcaag ttctgaagca 
     3421 tgaaaaatct ttgcatatga attccttaca acaagctgct attaatgccc ggatgtctat 
     3481 gagagaggaa cttaatctta aaaaagcttc ttatgatgtt cgtgtgaaaa tgaataagca 
     3541 ttatagaaaa gagaaaattt aaattagatt taactattaa ttaacacctt attaacaata 
     3601 gatttcctat ctttgtagtg taagaaaaag aaatactaat ttaatttaat tgttatggaa 
     3661 aagtatatta ttttttatca ttctgctttt ggttatgaca atgttcgtgt tgatgctgaa 
     3721 tctttctcag atgctgtttc tattgctgat tctattagct ctaaatttgg tgctactatt 
     3781 gtcggtgtat gtcttgaagt tttattaaat aattggtatc atgaataagt acacttttat 
     3841 ttttgaaatc atctggcgtg accctaagac cggtcagttt aaaactagtg aatatcgcaa 
     3901 gaagaatcag atgtctattg ttgatgctcg ttcttatgct cgacgtttgg ttaatatcca 
     3961 aaatgtttta tccgttcgtt tttataaaga aatgtgttga tatgtataaa ggtgttttaa 
     4021 agtttattaa aagagaaact cttcatgaag agtttgttat aagtattggt atatttaatc 
     4081 gtccttcaac tgccgaacgt tttcgcaagc aattgcagga tgttaatgta ggttatgatg 
     4141 ttttactaat tcttgaaaaa ttatgaaaat tactcctaat cagtggatcg agcttgtaaa 
     4201 gcttatttcc acatttatta ttggtgtgat tactgctctt acagtacagt cttgtactgc 
     4261 gtctatgtct gtgttttgga aaaatcaaaa ttcaaaacag gattctcaac aaactaccca 
     4321 acaagaggta gattcagtaa ctattaaacc gcaattttaa atggcacaaa acgtttttga 
     4381 cgctacattt gatgctaata accgcattga tgtaaattcg tttgattggt ctcatgtgaa 
     4441 taatttgact actaattttg gtcgcattac tcctgtattc tgtgagcttg ttcccgcgaa 
     4501 aggttctctt cgtattaatc cagagtttgg tcttgagctg atgcctatgg tattccctgt 
     4561 tcaaactcgt atgtttgcac gtcttaactt ctttaaggta actcttcgtt ctatgtggga 
     4621 agactatcct gatttcatct ctaatttccg tgatgatttg gaagaacctt atattttgcc 
     4681 tgataagcac ggctttgaac gtatgcttaa aactaatact ttaggtgatt accttggtat 
     4741 tccaacacag agaactactt tttctaacta ttcttcttct gccattaatc attgtactcc 
     4801 ttctggtagt agtacatctg aaggtttcta ttttgtctct ccttccttat cttgggatga 
     4861 tatttattct cagtggaccg gcactgtcgg tagtgttaaa actattggtt gtgttgttag 
     4921 tccttctaat gaggaatcta cggtttttct gttatctaat agcttggcta taggcaaata 
     4981 tacttctgct tcattatcgt ttaagatgac taccactgct agttttaaaa aaatgccttg 
     5041 tcgtattatt atatatcaca ctgcattaaa aactaagttt tatgttgatt ctgaatttgc 
     5101 gttgtctgat gataataaaa ctgctaggtt aagtattcct cttggtaatg ttgcggaaaa 
     5161 gcttggagct attggttcta ctgtgtctga gttttgtaat atgtgtattt tgatatctaa 
     5221 ttctagtttg aattctgctg ctaatgctgt taccgcccag tcagttaatg tttacgcaga 
     5281 tcccgagctt tcggaagttg actatgatac ttatccgttt cggacacaaa aaaatgatac 
     5341 tgctgaacac cctaaattgc ttgcttatcg ttttcgtgct tatgaatctg tttacaacgc 
     5401 ctattatcgt gatatacgca acaatccttt tgtagttaac ggtcgtcctg tttacaataa 
     5461 atggcttccg acaatgaaag gcggagctga ctctacgtta tatcagcttc atcaatgcaa 
     5521 ttgggaacgt gatttcttga ccaccgctgt accgaatcct caacaaggta tgaatactcc 
     5581 tcttgttggt cttaccattg gagatgttgt tactcgctct gaagatggca cgctttctgt 
     5641 tcaaaaacag actgtccttg ttgatgaaga tggctctaaa tatggtgttt cttatagagt 
     5701 atctgaagat ggtgaacgtc ttgttggtgt tgattatgat cctgtatcgg aaaaaacgcc 
     5761 tgtgactgct attaattcct atgctgaatt ggctgctctt gcagctgaac aaagtgcagg 
     5821 ttttactatt gagactcttc gttatgttaa tgcctatcaa aagttcttag agcttaatat 
     5881 gcgcaaaggg ttttcgtata aacaaattat gcaaggtcgt tgggatattg atatccggtt 
     5941 tgatgagctt cttatgcctg aatttattgg tggtatctct cgcgagttgt ccatgcgtac 
     6001 tgttgaacaa accgttgacc aacaaggtag ttcatctcaa ggacaatatg cagaagctct 
     6061 cggttctaaa actggtatcg ctggagttta tggtaacact tctaataata ttgaagtatt 
     6121 ctgtgatgag gaatcttaca ttatcggttt gctaactgta actcctgtgc ctatttatac 
     6181 tcaattgttg cctaaagatt ttacatataa tggtttatta gaccactatc agccggaatt 
     6241 cgatcgtatt ggttttcaac ctattaccta taaggaaata tgcccaatga atgctgataa 
     6301 ttcgacttct tctggattta tagagcggac gtttggttat caacgtccgt ggtatgaata 
     6361 tgtagctaag ta 
//
