FEATURES             Location/Qualifiers
     gene            complement(1119..1268)
                     /locus_tag="Alpa_01"
     CDS             complement(1119..1268)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MEMYLISYQKQGSAPVVYVASDNNLMATVNQALKESEGAPVLVSSAKTI"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(1272..1478)
                     /locus_tag="Alpa_02"
     CDS             complement(1272..1478)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MRITPQQWIEIVKLISTFIIGVITTLFVQSCTISMSVSKNNQNSTQKTEQTSTSSIDSTKININPKNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02719"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2117..2332)
                     /locus_tag="Alpa_03"
     CDS             complement(2117..2332)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MKENFYFVLYLGTSVLNVYAGSQSNARAYFRRWIEKNLPVYYHESDFWFLRYECFSDFLASRYPVKFDLKL"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 20 and 21 "
                     /inference="protein motif:TMHMM:2.0"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2466..3563)
                     /locus_tag="Alpa_04"
     CDS             complement(2466..3563)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="VLNQFLSSDGYDIAIVPALIGAIGAIGAAGFGAAANNKNVAQNQMNNDFNAREAQKARDFQLEMWNRQNEYNSPANQRKLRAEAGYNPYLGYDSNTGVAGSTGSTSQAQAASPLSLNPEVYSELGSQLGRAGQMIYQERESNARTKALQGDADVARAQALQVFSNVDWGKLSPDYKKWMRETGLQRAQLDYDTNKQNLQNLRWSNLIQMAERTNLLLSANTKRTLNKYLDQSEQTRINVMAAQYYDLMAAGHLKYQQCKESIAKQILYSKQGSWYDSMANKNNLDYRNALALADDYIAAMSTQYESQTAYNMGFGQKAQEAGRRDAESKSFKSLIDRWNYNKRYYEEGLNTLQVVANAIGSIRGR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="1 probable transmembrane helix predicted by Phobius with cleavage site between residues  and  "
                     /inference="protein motif:TMHMM:2.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACEGG.02723"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3538..4053)
                     /locus_tag="Alpa_05"
     CDS             complement(3538..4053)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MIMKEKKELCFGCGFREFTPTREISTFPSTRIGEISLEVDPVEQFRFETETFGESVSYRLRSDVSMLLHAADLAKRAGVSTVQRFLDSKSPRSSSLQEQLDKLNPSDDELLSMVKSRHLQHPSEILAWIDSINELAEDMRSEALKQTAENESTKFDSSGSDVSGAESVPVQ"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4060..5952)
                     /locus_tag="Alpa_06"
     CDS             complement(4060..5952)
                     /product="unnamed protein product"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="MAHFTGLKQLQNHPHRSGFDIGAKNVFSAKCGELLPVYWDLGIPGCTYDIDIQYFTRTRPVQTAAYTRIREYFDFYAVPIDLIWKSFDASVIQMGETAPVQAKDILTALTVSGDLPYCSLSDLGLSCFFASGSMSVPSLKSWQANNAYANIFGYIRGDVNYKLIHMLNYGNIIPNNMPALNIGNSNYRWWNREAPLASDSLIVYSQMYNFNMNVNLFPLATYQKIYQDFFRWSQWEKADPTSYNFDWYQGSGNLFGGTIDTSLPASSDYWKRDNLFSLRYCNWNKDLFMGVLPNSQFGDIAVIDIEGGLNIPASRISLSSNNRPTIGIKVGAQVSSPNNCSITNSSGNLSTGDILSVGIPAASYKLQSSFNVLALRQAESLQKYREITQSVDTNYRDQIKAHFGVNVPASDSHMAQYIGGIARNLDISEVVNNNLQGDGEAVIYGKGVGTGTGSMRYTTGSKYCILMCIYHCMPVLDYDISGQHPQLLATSVDELPIPEFDNIGMEGVPLVQLVNSNLYKTNKSVKIDSILGYNPRYYAWKSNIDRIHGAFTTTLQDWVSPVDDSFLYSTFGTPSSGSFVTWPFFKVNPNTLDNIFAVKSDSTWESDQFLVNSYVGCKVVRPLSRDGVPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:CDL65742.1"
                     /inference="similar to AA sequence:INSD:WP_004291032.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /db_xref="eggNOG:bacteNOG05989"
                     /db_xref="eggNOG:bactNOG180503"
                     /db_xref="eggNOG:bctoNOG21249"
                     /db_xref="eggNOG:NOG133500"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(5955..6230)
                     /locus_tag="Alpa_07"
     CDS             complement(5955..6230)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_07"
                     /translation="LFISSVDYWSKKELKFINDFYDYLSAHPESDSFLKSRTVGFVCPPKENISFWNDLNTTLSSLKNSVTQRIFQKVKHKNYNDISGLLFNLNF"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 agcctgttgg acgctgtgaa cgtcaccgaa aaataagtca acacagctgt gtggatcctt 
       61 aaaaaaaggg tcagagattc tggggaatac tgtatgttca tacgaccgtg aaggtttgac 
      121 agtgacatat tcaccattaa tcggaacact gaatccatca aaacacgaag cggcaacttc 
      181 gtccacttgt gaaatgtcgg acgttcgaga aaagaggcta ttaaccgata accctttgga 
      241 gtggtaggat ttaggcttaa tttctttgtg tcggttaaaa aaatctggta aatcgacaaa 
      301 actattaata tatgacgcaa cataaccagc tgcggaacct ctcgagagtg aacaatctgt 
      361 acgaccgtaa ctccaactct tagataccaa ctcacatata gacgaggtga gtgcgtccga 
      421 gttaaagaat aatataccat gccaatgcgg acgatatgtc cgtccaccat actctgatac 
      481 aaggtagtaa catatttttt catcgtatct ctctgatatt aatttacgta aacgtttaaa 
      541 aaataaattc tgatcataag gattcaaaac caaaatttca ttacgacatt catcaataga 
      601 aggaaaaaca acacatttgc gtgaaaaatc ataacgaccg ttagaagata ccaacaaatc 
      661 acgtatttcc ttgccggaaa aagtatgaag aaactgatat gaatcctctg tttctgaaaa 
      721 atcgcgaaca cgaccggagt cgtgaacgcg aaaacagcca gaacggggta aataagtagc 
      781 tgctatttga tatctagaat catcataggg taaatgtcta gggtcagaat cggacatata 
      841 agcgtcaatc tcactttcag catcacacct ttctacaacc tcaagagata cacgagggac 
      901 gaactcatcc gaataagtaa gcgtaaaaaa gtaggcatgc ttaaaatgag acgacatgtt 
      961 tgatattaaa gcacattgga tattagaacg atgaacaagg catgacggac acgtaccaca 
     1021 acgaacaaac agtgtttcat gagtgtatct attagtcacc tttcgaggat gaaaacactc 
     1081 tgtagctaaa tatttttccc gttctttttc agtcatagtc aaatagtttt agcagatgaa 
     1141 accaatacag gcgcaccttc agactctttc agagcctggt taaccgtagc cataagatta 
     1201 ttgtcactag caacataaac aacaggggca gagccttgct tctgataaga aatcaaatac 
     1261 atttccataa tttaaaaatt tttagggtta atattaattt tagtagaatc aatagacgac 
     1321 gtagaagtct gttcggtttt ctgcgtcgag ttttgattat tctttgaaac agacatagaa 
     1381 atggtacagg actgcacaaa caaagtggta ataacaccaa taataaacgt tgaaattaat 
     1441 tttacaattt caatccattg ttgaggagta attctcataa caaaacaggt ttgagttaaa 
     1501 caacaccaca atgatagaaa taaaaatcat aataaccaaa taaaatagta ttttctttag 
     1561 aggcagtgta atttttcaaa agaaagacaa gggataagag ctttgaataa ggtaaattca 
     1621 aagcccttcg ggaaaaaatt aaataggctt cgccaataaa atgaactagg gggcagcgat 
     1681 accgaaccgt tccgcccttc gggcgcaggt atgtgctata ataatataaa atagtaaaaa 
     1741 aataaacaaa taataaatat agcacaacac tttaacaaga acgaggaaca catcttccat 
     1801 gcatagctac gctcgcatgg ggctgtgttc ctcgtggggg aagctgcgca acggcacgtc 
     1861 ctgcagctgg taggtgttaa cattgaatgg atctatgttt agcacctcgg gccgggcggc 
     1921 cttggtgtat atggggaagg tgaggtatgg ttaagacaga cgggcggcta ccttaacaaa 
     1981 tagattagaa gattgacgga tctcccacgc ttcgcgcgtg gagtgcggct tcgccgataa 
     2041 taaggtacta gtcgttaagg gggcttaaaa aagcccctgt tacccaattt gcgttcaggc 
     2101 cacgcaggcc gtgaagctac aatttaagat caaacttcac cggatatcgg gaggctaaga 
     2161 aatcagagaa gcactcataa cgaagaaacc agaagtcaga ctcatggtaa tagaccggta 
     2221 agttcttctc gatccaacga cgaaaataag cacgggcatt agattgagag ccagcataaa 
     2281 cgttaagaac agaggttcct aaatacagca caaaataaaa attttccttc atgactatta 
     2341 acttttaaat gatatataaa gataataata aatagttatt ataacaaatt ataatgatta 
     2401 aaagatgtta aaaaaaagca aaaaaaaaat cctcccgcta cgcgggagga taaagatact 
     2461 accgactaac gaccacgaat agatccaata gcattggcaa caacttgaag agtatttaaa 
     2521 ccttcttcat aataacgttt attataattc cagcggtcaa taagagattt aaaggactta 
     2581 gattcagcgt cacgccttcc ggcttcctgg gctttttggc cgaagcccat attataagcc 
     2641 gtttgcgatt catattgagt actcatagca gcaatataat catcagcaag ggcaagagca 
     2701 ttacgataat caagattatt cttattagcc atagagtcat accaagaacc ttgcttagag 
     2761 tatagaatct gtttagcaat ggattcctta cattgctggt atttcaaatg tcctgcggcc 
     2821 atcagatcat aatattgggc agccatcaca ttaatacgag tctgttcaga ctgatcaaga 
     2881 tacttgttca aagtacgctt agtattagca gatagcaaca aattcgtacg ctcggccatc 
     2941 tgaatcaaat tagaccaacg caaattttga agattctgct tattggtatc ataatcaagt 
     3001 tgagcacgct gtaaaccagt ctctcgcatc cattttttat aatctgggga aagttttccc 
     3061 cagtcaacat tagaaaatac ctgaagagct tgagcacgtg ctacatctgc atctccttgt 
     3121 aaagccttag tacgagcatt agattctcgt tcctggtaaa tcatttggcc ggctcgacca 
     3181 agttgagaac caagctcgga ataaacttca ggattcaagg agagaggaga agcggcttga 
     3241 gcttgagaag tactaccggt agaaccagca actccggtat tcgaatcata acccagataa 
     3301 ggattatatc cagcttcagc gcgcaattta cgctgattag caggagaatt atactcattc 
     3361 tgtctattcc acatctcaag ctgaaaatca cgagctttct gggcttcacg agcattaaaa 
     3421 tcattattca tctgattttg tgcaacgttc ttattattag cagcagcacc aaatccggca 
     3481 gcaccaatag caccaatagc accaataaga gcaggaacaa tagctatatc atagccatca 
     3541 ctggacagga actgattcag caccactgac atcagaacca gaagaatcaa atttagtgct 
     3601 ttcattttcg gcagtctgtt taagagcttc ggatctcata tcctcggcaa gttcattaat 
     3661 agaatcaatc caagcaagaa tctcactagg gtgttgcaaa tgacgagatt taaccatcga 
     3721 caacaactca tcatcagaag ggttcaattt gtccaattgt tcttgtaaag aagaagaacg 
     3781 gggactctta gaatccaaaa atcgttgaac ggtagaaaca ccggcacgct tagcaaggtc 
     3841 ggcagcatga agtaacatgc tcacatcaga gcgaagacga taagaaacag attcgccaaa 
     3901 agtctctgtc tcaaaacgaa attgttcaac agggtcaact tcaagagaaa tctcaccaat 
     3961 acgagtagag gggaaagtag aaatctcacg agtaggggta aattcacgaa acccacatcc 
     4021 aaaacaaagt tcttttttct ctttcataat catataaatt taataaggaa caccatcacg 
     4081 cgacaatgga cgaacaacct tacatccaac ataagaatta accaaaaatt gatcactctc 
     4141 ccaagtagaa tcagacttaa cggcaaaaat gttgtccaaa gtattaggat taaccttgaa 
     4201 gaaaggccag gtgacaaaag aaccagaaga aggagtacca aacgtactat acaggaaaga 
     4261 gtcatcaaca ggagaaaccc aatcctgaag agtcgtagta aatgcaccat gaatacggtc 
     4321 tatattagac ttccaagcat aataacgagg attataacct agaatagaat caatctttac 
     4381 agacttatta gtcttataca aattggaatt aaccaactga acaagaggta caccttccat 
     4441 accaatatta tcgaattcag gaataggaag ctcatctaca gaagtagcca aaagttgagg 
     4501 atgctggccg gaaatatcat aatcaagaac aggcatgcaa tggtaaatac acatcaaaat 
     4561 acaatatttg gaacctgtag tataacgcat agaaccggtt ccagtaccca cacctttacc 
     4621 gtagatgaca gcttcaccat caccttgcaa gttgttattt acaacctcgg aaatatcaag 
     4681 atttcgagca ataccaccaa tatactgcgc catgtgagaa tcagaagcag gaacattaac 
     4741 gccaaaatga gctttaatct ggtcacgata attggtatca acagattgag taatttcacg 
     4801 atacttctgc aaagattctg cctgacgaag agcaagaacg ttaaacgaag attgcagctt 
     4861 ataagaagct gcaggaatgc caacagacaa aatatcacca gttgacaaat tacctgaaga 
     4921 attagtaatt gaacaattat taggagaaga aacttgcgcg cctaccttga taccaatagt 
     4981 aggacggttg ttagaggata aagaaatacg agaagcggga atattaagac ctccttcaat 
     5041 atcaattact gcaatatctc caaactggga attaggaaga actcccataa ataaatcctt 
     5101 attccagttg caataacgaa gagaaaataa attatctcgt ttccaataat cggaactagc 
     5161 aggaagagaa gtatcaatag taccaccaaa taaatttcca gaaccctggt accagtcaaa 
     5221 attataagaa gtaggatcag ccttttccca ttgagaccaa cggaagaaat cttggtaaat 
     5281 cttctgataa gtagcaagag ggaaaagatt gacattcatg ttaaaattat acatctggct 
     5341 ataaacaata agagaatcgg aagcaagagg agcttctcga ttccaccaac gataattaga 
     5401 attaccgatg tttagagcag gcatattatt aggaataata ttcccataat ttaacatatg 
     5461 aataagctta taatttacat ctccacgaat ataaccaaaa atattagcat aagcattatt 
     5521 cgcctgccaa gatttcaagc tagggacaga catagaacca gaagcgaaaa aacaagatag 
     5581 acctaaatct gatagagaac aataaggcaa atctccggaa acagtcaacg cagtcaaaat 
     5641 atccttagct tgaacaggag ctgtctcacc catttgaata acagaagcgt caaatgactt 
     5701 ccagatcaaa tcaataggaa cagcgtaaaa atcgaaatac tcacgaatac gagtataagc 
     5761 ggcagtttga accggacgag tacgagtaaa atactgaata tcaatatcgt acgtacaacc 
     5821 aggaatacct aaatcccaat aaacaggaag aagttcacca cacttcgcag aaaacacatt 
     5881 cttagctcca atatcgaaac cggaacgatg aggatgattc tggagctgtt ttaaacctgt 
     5941 aaaatgagcc ataattaaaa atttaaatta aacaataaac ctgatatatc attataattc 
     6001 ttatgtttaa ctttctgaaa aatacgttga gtaacagaat ttttcaaaga ggacaaggta 
     6061 gtatttaaat cattccaaaa tgaaatattc tcttttggag gacaaacaaa accaacagtc 
     6121 ctggatttca aaaaagaatc tgattcagga tgagcagaaa gataatcata aaaatcattg 
     6181 ataaatttca attccttttt agaccaataa tcaacagaag aaataaacaa cttgagtaaa 
     6241 gacttcttta aatcttcagg taaaacatag cagtcgagat gccaaaaacg aagagtacga 
     6301 ctaacggcag aaaaaaaccg ataaatttta ccagtaatgc aatcaaaatc aatttggtca 
     6361 gtt 
//
