bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-10_CDS_annotation_glimmer3.pl_2_2
Length=57
Score E
Sequences producing significant alignments: (Bits) Value
xau:Xaut_0277 resolvase domain-containing protein 41.2 0.007
bbt:BBta_0430 resolvase 39.3 0.027
cak:Caul_4182 resolvase domain-containing protein 35.0 0.71
ccoi:YSU_08430 hypothetical protein 29.6 7.6
ccf:YSQ_09435 hypothetical protein 29.6 7.6
ccq:N149_1616 Hypothetical protein 29.6 7.6
zma:100281586 DNA-binding protein 31.6 9.5
> xau:Xaut_0277 resolvase domain-containing protein
Length=551
Score = 41.2 bits (95), Expect = 0.007, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 26/34 (76%), Gaps = 0/34 (0%)
Query 3 KYYLCSIQSKLNPSQCETVLVPVDEVSDFVSSNL 36
+YY CS++++ P+ CE + VP+D++ D V+S+L
Sbjct 329 RYYACSMKARQGPTACEGMAVPMDKLDDLVASHL 362
> bbt:BBta_0430 resolvase
Length=540
Score = 39.3 bits (90), Expect = 0.027, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 26/34 (76%), Gaps = 0/34 (0%)
Query 3 KYYLCSIQSKLNPSQCETVLVPVDEVSDFVSSNL 36
+YY CS++++ P+ CE + VP+D++ + V+S+L
Sbjct 329 RYYACSMKARQGPTACEGLAVPMDKLDELVASHL 362
> cak:Caul_4182 resolvase domain-containing protein
Length=579
Score = 35.0 bits (79), Expect = 0.71, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 30/48 (63%), Gaps = 7/48 (15%)
Query 3 KYYLCSIQSKLNPSQCETVLVPVDEVSDFVSSN-----LRPD--CILI 43
+YY CS ++++ S C + VP+D++ D V ++ L+PD C+L+
Sbjct 339 RYYTCSTKARMGKSGCTGITVPMDKLDDAVVNHLERRLLQPDRLCMLM 386
> ccoi:YSU_08430 hypothetical protein
Length=44
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 0/25 (0%)
Query 5 YLCSIQSKLNPSQCETVLVPVDEVS 29
Y CS+Q+ +NP C LVP DE +
Sbjct 19 YTCSLQNLINPGSCNPNLVPNDEYA 43
> ccf:YSQ_09435 hypothetical protein
Length=44
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 0/25 (0%)
Query 5 YLCSIQSKLNPSQCETVLVPVDEVS 29
Y CS+Q+ +NP C LVP DE +
Sbjct 19 YTCSLQNLINPGSCNPNLVPNDEYA 43
> ccq:N149_1616 Hypothetical protein
Length=44
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 0/25 (0%)
Query 5 YLCSIQSKLNPSQCETVLVPVDEVS 29
Y CS+Q+ +NP C LVP DE +
Sbjct 19 YTCSLQNLINPGSCNPNLVPNDEYA 43
> zma:100281586 DNA-binding protein
Length=477
Score = 31.6 bits (70), Expect = 9.5, Method: Composition-based stats.
Identities = 17/45 (38%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query 3 KYYLCSIQSKLNPSQCETVLVPVDEVSDFVSSNLR--PDCILIFS 45
+Y L S +SK N SQ ++++V V E +D+V N+R DC +++
Sbjct 359 EYALKSSRSKTNKSQEDSMVVDVGEPADWVKINVRQTKDCFEVYA 403
Lambda K H a alpha
0.320 0.132 0.394 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 126758474451